Wall clock time and date at job start Tue Mar 31 2020 20:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47275 * 2 1 4 4 N 1.46501 * 109.47122 * 120.00175 * 2 1 3 5 5 C 1.34782 * 119.99586 * 274.99744 * 4 2 1 6 6 O 1.21551 * 120.00134 * 0.02562 * 5 4 2 7 7 C 1.47862 * 119.99591 * 179.97438 * 5 4 2 8 8 C 1.39542 * 120.12161 * 359.72681 * 7 5 4 9 9 C 1.38209 * 119.87342 * 179.76553 * 8 7 5 10 10 F 1.35103 * 119.93969 * 180.27352 * 9 8 7 11 11 C 1.38523 * 120.12233 * 0.48702 * 9 8 7 12 12 C 1.38530 * 120.24573 * 359.78685 * 11 9 8 13 13 F 1.35096 * 119.94009 * 179.97438 * 12 11 9 14 14 C 1.38206 * 120.11818 * 359.95638 * 12 11 9 15 15 C 1.53007 * 109.47168 * 239.99723 * 2 1 3 16 16 H 1.08996 * 109.49646 * 299.93667 * 15 2 1 17 17 C 1.53042 * 109.49385 * 60.00179 * 15 2 1 18 18 C 1.53041 * 109.53415 * 181.35149 * 17 15 2 19 19 C 1.53197 * 109.31035 * 298.63246 * 18 17 15 20 20 N 1.46921 * 108.89220 * 54.56963 * 19 18 17 21 21 C 1.36934 * 120.63409 * 126.46494 * 20 19 18 22 22 H 1.08000 * 119.99464 * 331.92132 * 21 20 19 23 23 C 1.38810 * 120.00385 * 151.92408 * 21 20 19 24 24 N 1.31619 * 119.99689 * 343.17004 * 23 21 20 25 25 Si 1.86795 * 119.99988 * 163.17171 * 23 21 20 26 26 H 1.48499 * 109.47320 * 89.99982 * 25 23 21 27 27 H 1.48500 * 109.47299 * 209.99808 * 25 23 21 28 28 H 1.48507 * 109.47261 * 329.99989 * 25 23 21 29 29 C 1.46963 * 118.71124 * 306.63494 * 20 19 18 30 30 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46590 * 300.00039 * 1 2 3 32 32 H 1.08998 * 109.46452 * 60.00344 * 1 2 3 33 33 H 0.96999 * 120.00412 * 95.00118 * 4 2 1 34 34 H 1.08000 * 120.06435 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.87994 * 179.76358 * 11 9 8 36 36 H 1.08002 * 120.05741 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.45805 * 61.32791 * 17 15 2 38 38 H 1.08994 * 109.46043 * 301.36699 * 17 15 2 39 39 H 1.09005 * 109.49645 * 178.68611 * 18 17 15 40 40 H 1.08998 * 109.50347 * 58.58349 * 18 17 15 41 41 H 1.09000 * 109.58445 * 174.42964 * 19 18 17 42 42 H 1.09004 * 109.58739 * 294.70519 * 19 18 17 43 43 H 0.97000 * 119.99637 * 180.02562 * 24 23 21 44 44 H 1.09000 * 109.47297 * 293.57143 * 29 20 19 45 45 H 1.09005 * 109.70555 * 173.29008 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1611 2.4118 7 6 2.6395 -0.7154 3.5645 8 6 2.9661 -2.0708 3.5063 9 6 3.4304 -2.7163 4.6367 10 9 3.7523 -4.0272 4.5804 11 6 3.5622 -2.0226 5.8285 12 6 3.2340 -0.6783 5.8935 13 9 3.3644 -0.0080 7.0591 14 6 2.7737 -0.0217 4.7679 15 6 2.0401 -0.7213 -1.2493 16 1 1.6779 -1.7494 -1.2491 17 6 1.5303 -0.0003 -2.4992 18 6 2.0119 -0.7405 -3.7492 19 6 3.5436 -0.7382 -3.7805 20 7 4.0461 -1.2964 -2.5178 21 6 4.9362 -2.3370 -2.5202 22 1 4.9423 -3.0404 -3.3396 23 6 5.8306 -2.4877 -1.4693 24 7 6.0608 -1.4823 -0.6518 25 14 6.7074 -4.1175 -1.2156 26 1 7.9836 -4.1165 -1.9748 27 1 6.9913 -4.3072 0.2296 28 1 5.8442 -5.2247 -1.7000 29 6 3.5720 -0.7188 -1.2523 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 2.8595 -2.6137 2.5787 35 1 3.9218 -2.5318 6.7105 36 1 2.5177 1.0263 4.8197 37 1 1.9130 1.0201 -2.5113 38 1 0.4406 0.0209 -2.4872 39 1 1.6291 -0.2399 -4.6386 40 1 1.6501 -1.7684 -3.7255 41 1 3.8929 -1.3476 -4.6141 42 1 3.9052 0.2833 -3.8981 43 1 6.6861 -1.5875 0.0823 44 1 3.9360 0.3045 -1.1611 45 1 3.9400 -1.3134 -0.4162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025614729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:38 Heat of formation + Delta-G solvation = -88.264532 kcal Electronic energy + Delta-G solvation = -29939.821225 eV Core-core repulsion = 25593.422397 eV Total energy + Delta-G solvation = -4346.398828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.23248 -49.17438 -40.29104 -38.56227 -37.62062 -35.22246 -33.21067 -32.07249 -30.89377 -30.42165 -29.77862 -28.70988 -25.37672 -24.80472 -23.30457 -22.86962 -22.05645 -20.85431 -20.30802 -19.30178 -18.44537 -17.42596 -16.84413 -16.66719 -16.34741 -16.21794 -16.00635 -15.49956 -15.47764 -15.00458 -14.80646 -14.54804 -14.19017 -13.92731 -13.67481 -13.35304 -13.24741 -12.91758 -12.74609 -12.53833 -12.28303 -12.21143 -12.09642 -12.04087 -11.92028 -11.45322 -11.08369 -10.94615 -10.72805 -10.47968 -10.27222 -10.14262 -10.01914 -9.91209 -9.62257 -9.47120 -9.37511 -9.02955 -8.82861 -8.52198 -6.70152 -5.83453 -3.26176 0.35349 0.71383 2.58345 3.09639 3.32395 3.40899 3.41951 3.49802 3.63245 4.07633 4.33959 4.44308 4.51009 4.74274 4.77390 4.98206 5.25417 5.29100 5.42320 5.45952 5.49388 5.53053 5.56883 5.63048 5.67905 5.74061 5.77311 5.83979 6.02161 6.09087 6.14104 6.26354 6.36363 6.39722 6.42943 6.46606 6.61475 6.67107 6.78500 6.84105 6.98544 7.28056 7.58955 7.61603 7.74762 8.25956 8.39717 9.16561 9.79904 10.37508 11.24263 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.004256 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.312607 B = 6577.877219 C = 8678.145347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.704 5.704 5 C 0.562 3.438 6 O -0.534 6.534 7 C -0.067 4.067 8 C -0.127 4.127 9 C 0.128 3.872 10 F -0.126 7.126 11 C -0.172 4.172 12 C 0.123 3.877 13 F -0.128 7.128 14 C -0.107 4.107 15 C -0.122 4.122 16 H 0.068 0.932 17 C -0.102 4.102 18 C -0.133 4.133 19 C 0.143 3.857 20 N -0.592 5.592 21 C -0.253 4.253 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.899 5.899 25 Si 0.896 3.104 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.180 3.820 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.402 0.598 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.017 0.983 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 -0.022 8.894 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.354 5.354 5 C 0.348 3.652 6 O -0.412 6.412 7 C -0.071 4.071 8 C -0.147 4.147 9 C 0.108 3.892 10 F -0.104 7.104 11 C -0.192 4.192 12 C 0.103 3.897 13 F -0.107 7.107 14 C -0.127 4.127 15 C -0.143 4.143 16 H 0.087 0.913 17 C -0.140 4.140 18 C -0.172 4.172 19 C 0.016 3.984 20 N -0.314 5.314 21 C -0.383 4.383 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.726 3.274 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.054 3.946 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.238 0.762 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.295 0.792 9.068 13.742 hybrid contribution 0.880 -1.487 0.392 1.772 sum -9.415 -0.696 9.459 13.365 Atomic orbital electron populations 1.22218 0.95726 1.01873 1.02172 1.21070 0.93191 0.97671 0.83514 0.89412 1.45967 1.65739 1.14341 1.09330 1.17875 0.78033 0.86426 0.82902 1.90771 1.50424 1.15081 1.84950 1.19641 1.00318 0.92790 0.94340 1.21455 0.99927 0.94550 0.98735 1.17074 0.99531 0.78849 0.93705 1.91573 1.90131 1.31803 1.96935 1.21182 1.05052 0.93878 0.99102 1.17065 1.00910 0.89599 0.82112 1.91548 1.93523 1.79994 1.45616 1.21271 0.99125 1.02103 0.90214 1.22178 1.01415 0.98710 0.91961 0.91331 1.21437 0.98816 0.99057 0.94649 1.21995 0.99071 0.99844 0.96326 1.20928 0.91003 0.96403 0.90022 1.44022 1.49525 1.38440 0.99444 1.19167 1.10096 1.01782 1.07233 0.91770 1.25023 0.97048 0.97269 1.00124 1.70040 1.36711 1.28750 1.18867 0.86399 0.79805 0.84004 0.77216 1.21355 1.21478 1.20475 1.20773 0.86178 0.97286 0.90393 0.92669 0.92608 0.91276 0.76191 0.83265 0.83044 0.82606 0.92527 0.93035 0.93085 0.92453 0.92981 0.96555 0.93661 0.96490 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.13 37.16 0.34 -1.71 16 2 C 0.15 2.28 2.16 -67.92 -0.15 2.13 16 3 H 0.09 1.51 7.58 -51.93 -0.39 1.11 16 4 N -0.70 -10.41 4.43 -54.74 -0.24 -10.65 16 5 C 0.56 8.71 7.74 -12.32 -0.10 8.61 16 6 O -0.53 -9.65 16.01 5.32 0.09 -9.56 16 7 C -0.07 -0.90 5.87 -104.98 -0.62 -1.52 16 8 C -0.13 -1.57 9.52 -39.11 -0.37 -1.94 16 9 C 0.13 1.52 7.29 -39.49 -0.29 1.23 16 10 F -0.13 -1.59 17.26 2.25 0.04 -1.55 16 11 C -0.17 -1.82 10.00 -39.37 -0.39 -2.22 16 12 C 0.12 1.39 7.29 -39.49 -0.29 1.10 16 13 F -0.13 -1.45 17.26 2.25 0.04 -1.41 16 14 C -0.11 -1.33 9.57 -39.11 -0.37 -1.70 16 15 C -0.12 -2.06 1.97 -90.50 -0.18 -2.24 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.10 -1.57 4.85 -26.69 -0.13 -1.70 16 18 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 19 C 0.14 2.90 6.51 -3.71 -0.02 2.87 16 20 N -0.59 -14.17 3.00 -172.29 -0.52 -14.69 16 21 C -0.25 -6.68 9.58 -15.06 -0.14 -6.83 16 22 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 23 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 24 N -0.90 -25.03 11.20 55.49 0.62 -24.41 16 25 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 C 0.18 3.97 4.34 -3.69 -0.02 3.95 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 33 H 0.40 5.51 6.46 -40.82 -0.26 5.25 16 34 H 0.15 1.70 6.40 -52.49 -0.34 1.37 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.16 1.88 7.65 -52.49 -0.40 1.48 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.11 5.58 -51.93 -0.29 1.82 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -29.66 370.65 -8.51 -38.17 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.11 Total: 4.88 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.97 Total: -2.26 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.14 Total: -49.75 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.96 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.66 -8.51 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025614729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.094 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds