Wall clock time and date at job start Tue Mar 31 2020 20:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47275 * 2 1 4 4 N 1.46501 * 109.47122 * 120.00175 * 2 1 3 5 5 C 1.34782 * 119.99586 * 274.99744 * 4 2 1 6 6 O 1.21551 * 120.00134 * 0.02562 * 5 4 2 7 7 C 1.47862 * 119.99591 * 179.97438 * 5 4 2 8 8 C 1.39542 * 120.12161 * 359.72681 * 7 5 4 9 9 C 1.38209 * 119.87342 * 179.76553 * 8 7 5 10 10 F 1.35103 * 119.93969 * 180.27352 * 9 8 7 11 11 C 1.38523 * 120.12233 * 0.48702 * 9 8 7 12 12 C 1.38530 * 120.24573 * 359.78685 * 11 9 8 13 13 F 1.35096 * 119.94009 * 179.97438 * 12 11 9 14 14 C 1.38206 * 120.11818 * 359.95638 * 12 11 9 15 15 C 1.53007 * 109.47168 * 239.99723 * 2 1 3 16 16 H 1.08996 * 109.49646 * 299.93667 * 15 2 1 17 17 C 1.53042 * 109.49385 * 60.00179 * 15 2 1 18 18 C 1.53041 * 109.53415 * 181.35149 * 17 15 2 19 19 C 1.53197 * 109.31035 * 298.63246 * 18 17 15 20 20 N 1.46921 * 108.89220 * 54.56963 * 19 18 17 21 21 C 1.36934 * 120.63409 * 126.46494 * 20 19 18 22 22 H 1.08000 * 119.99464 * 331.92132 * 21 20 19 23 23 C 1.38810 * 120.00385 * 151.92408 * 21 20 19 24 24 N 1.31619 * 119.99689 * 343.17004 * 23 21 20 25 25 Si 1.86795 * 119.99988 * 163.17171 * 23 21 20 26 26 H 1.48499 * 109.47320 * 89.99982 * 25 23 21 27 27 H 1.48500 * 109.47299 * 209.99808 * 25 23 21 28 28 H 1.48507 * 109.47261 * 329.99989 * 25 23 21 29 29 C 1.46963 * 118.71124 * 306.63494 * 20 19 18 30 30 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46590 * 300.00039 * 1 2 3 32 32 H 1.08998 * 109.46452 * 60.00344 * 1 2 3 33 33 H 0.96999 * 120.00412 * 95.00118 * 4 2 1 34 34 H 1.08000 * 120.06435 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.87994 * 179.76358 * 11 9 8 36 36 H 1.08002 * 120.05741 * 179.97438 * 14 12 11 37 37 H 1.08996 * 109.45805 * 61.32791 * 17 15 2 38 38 H 1.08994 * 109.46043 * 301.36699 * 17 15 2 39 39 H 1.09005 * 109.49645 * 178.68611 * 18 17 15 40 40 H 1.08998 * 109.50347 * 58.58349 * 18 17 15 41 41 H 1.09000 * 109.58445 * 174.42964 * 19 18 17 42 42 H 1.09004 * 109.58739 * 294.70519 * 19 18 17 43 43 H 0.97000 * 119.99637 * 180.02562 * 24 23 21 44 44 H 1.09000 * 109.47297 * 293.57143 * 29 20 19 45 45 H 1.09005 * 109.70555 * 173.29008 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8576 1.1611 2.4118 7 6 2.6395 -0.7154 3.5645 8 6 2.9661 -2.0708 3.5063 9 6 3.4304 -2.7163 4.6367 10 9 3.7523 -4.0272 4.5804 11 6 3.5622 -2.0226 5.8285 12 6 3.2340 -0.6783 5.8935 13 9 3.3644 -0.0080 7.0591 14 6 2.7737 -0.0217 4.7679 15 6 2.0401 -0.7213 -1.2493 16 1 1.6779 -1.7494 -1.2491 17 6 1.5303 -0.0003 -2.4992 18 6 2.0119 -0.7405 -3.7492 19 6 3.5436 -0.7382 -3.7805 20 7 4.0461 -1.2964 -2.5178 21 6 4.9362 -2.3370 -2.5202 22 1 4.9423 -3.0404 -3.3396 23 6 5.8306 -2.4877 -1.4693 24 7 6.0608 -1.4823 -0.6518 25 14 6.7074 -4.1175 -1.2156 26 1 7.9836 -4.1165 -1.9748 27 1 6.9913 -4.3072 0.2296 28 1 5.8442 -5.2247 -1.7000 29 6 3.5720 -0.7188 -1.2523 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 2.8595 -2.6137 2.5787 35 1 3.9218 -2.5318 6.7105 36 1 2.5177 1.0263 4.8197 37 1 1.9130 1.0201 -2.5113 38 1 0.4406 0.0209 -2.4872 39 1 1.6291 -0.2399 -4.6386 40 1 1.6501 -1.7684 -3.7255 41 1 3.8929 -1.3476 -4.6141 42 1 3.9052 0.2833 -3.8981 43 1 6.6861 -1.5875 0.0823 44 1 3.9360 0.3045 -1.1611 45 1 3.9400 -1.3134 -0.4162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025614729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:37 Heat of formation + Delta-G solvation = -103.889454 kcal Electronic energy + Delta-G solvation = -29940.498772 eV Core-core repulsion = 25593.422397 eV Total energy + Delta-G solvation = -4347.076375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.15217 -50.13334 -41.47325 -39.80689 -38.92437 -36.67152 -34.87077 -33.36767 -32.13294 -31.61591 -31.26179 -30.02848 -27.12565 -25.99919 -24.54950 -23.91971 -23.68076 -22.17029 -21.56523 -20.74820 -19.59252 -18.68905 -18.40336 -17.68310 -17.44023 -17.18324 -17.11420 -16.80034 -16.55585 -16.43871 -16.05854 -15.81424 -15.51379 -15.31919 -15.06142 -14.93896 -14.67273 -14.13052 -14.06207 -13.90100 -13.71320 -13.40736 -13.18435 -13.04349 -12.99356 -12.93495 -12.70702 -12.60388 -12.33960 -12.12629 -11.97346 -11.69192 -11.48271 -11.36596 -11.09727 -10.98604 -10.54098 -10.37882 -10.04241 -9.98954 -8.64144 -7.85058 -5.30920 -0.63247 -0.24455 1.45757 1.48848 1.50518 1.57310 1.96012 2.41360 2.51613 2.66627 3.10999 3.26971 3.35364 3.55143 3.59884 3.79856 3.82357 3.97704 4.09020 4.14485 4.25129 4.32519 4.45317 4.51515 4.54627 4.67609 4.68876 4.76417 4.79661 4.86179 4.88399 4.90294 5.03322 5.07698 5.17814 5.22194 5.28264 5.38633 5.48263 5.49277 5.53076 5.59236 5.69462 5.81469 6.40301 6.41297 7.05091 7.17205 7.88629 8.40875 9.19744 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.004256 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.312607 B = 6577.877219 C = 8678.145347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.153 3.847 3 H 0.063 0.937 4 N -0.702 5.702 5 C 0.560 3.440 6 O -0.566 6.566 7 C -0.082 4.082 8 C -0.126 4.126 9 C 0.121 3.879 10 F -0.129 7.129 11 C -0.154 4.154 12 C 0.125 3.875 13 F -0.126 7.126 14 C -0.108 4.108 15 C -0.106 4.106 16 H 0.074 0.926 17 C -0.100 4.100 18 C -0.122 4.122 19 C 0.134 3.866 20 N -0.611 5.611 21 C -0.263 4.263 22 H 0.064 0.936 23 C -0.042 4.042 24 N -0.929 5.929 25 Si 0.957 3.043 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.268 1.268 29 C 0.190 3.810 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.407 0.593 34 H 0.154 0.846 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.006 0.994 43 H 0.248 0.752 44 H -0.023 1.023 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -1.284 9.022 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 H 0.082 0.918 4 N -0.352 5.352 5 C 0.347 3.653 6 O -0.447 6.447 7 C -0.085 4.085 8 C -0.146 4.146 9 C 0.102 3.898 10 F -0.108 7.108 11 C -0.173 4.173 12 C 0.105 3.895 13 F -0.104 7.104 14 C -0.128 4.128 15 C -0.126 4.126 16 H 0.093 0.907 17 C -0.138 4.138 18 C -0.160 4.160 19 C 0.009 3.991 20 N -0.334 5.334 21 C -0.393 4.393 22 H 0.082 0.918 23 C -0.238 4.238 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.193 1.193 29 C 0.064 3.936 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.244 0.756 34 H 0.171 0.829 35 H 0.197 0.803 36 H 0.172 0.828 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.057 0.943 44 H -0.005 1.005 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.887 -0.486 9.166 15.018 hybrid contribution 1.436 -1.056 0.313 1.809 sum -10.451 -1.542 9.480 14.194 Atomic orbital electron populations 1.22127 0.92934 1.03046 1.02762 1.21000 0.95184 0.96056 0.82905 0.91839 1.45986 1.65462 1.14555 1.09197 1.18182 0.77436 0.86126 0.83549 1.90743 1.52027 1.16387 1.85539 1.19435 1.01998 0.93236 0.93824 1.21498 0.99593 0.94158 0.99336 1.17099 0.99954 0.78799 0.93966 1.91568 1.90221 1.32001 1.96968 1.21402 1.03092 0.93350 0.99499 1.16988 1.00868 0.89842 0.81791 1.91558 1.93496 1.80030 1.45355 1.21312 0.98977 1.02157 0.90370 1.21940 0.97236 0.99614 0.93845 0.90732 1.21469 1.00993 0.98160 0.93159 1.21874 0.95448 1.00606 0.98110 1.21122 0.94098 0.95390 0.88489 1.44328 1.49634 1.38318 1.01137 1.19474 1.10313 1.02400 1.07117 0.91810 1.25677 0.98045 0.99949 1.00148 1.70203 1.37515 1.30440 1.19327 0.85443 0.78531 0.80823 0.76669 1.21739 1.21713 1.19319 1.20557 0.89695 0.94180 0.89155 0.91121 0.93143 0.89564 0.75602 0.82850 0.80296 0.82769 0.93220 0.89279 0.89939 0.92185 0.93162 0.97646 0.94284 1.00455 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.13 71.98 0.66 -2.83 16 2 C 0.15 4.61 2.16 45.00 0.10 4.70 16 3 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 4 N -0.70 -21.03 4.43 -445.37 -1.97 -23.01 16 5 C 0.56 17.79 7.74 86.79 0.67 18.46 16 6 O -0.57 -21.11 16.01 -3.88 -0.06 -21.17 16 7 C -0.08 -2.19 5.87 -20.10 -0.12 -2.31 16 8 C -0.13 -3.07 9.52 22.58 0.21 -2.85 16 9 C 0.12 2.72 7.29 22.33 0.16 2.88 16 10 F -0.13 -3.06 17.26 44.97 0.78 -2.29 16 11 C -0.15 -2.95 10.00 22.41 0.22 -2.73 16 12 C 0.12 2.66 7.29 22.33 0.16 2.82 16 13 F -0.13 -2.65 17.26 44.97 0.78 -1.88 16 14 C -0.11 -2.66 9.57 22.58 0.22 -2.44 16 15 C -0.11 -3.49 1.97 -10.71 -0.02 -3.52 16 16 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 17 C -0.10 -2.86 4.85 30.62 0.15 -2.71 16 18 C -0.12 -3.67 6.08 30.67 0.19 -3.48 16 19 C 0.13 5.41 6.51 86.37 0.56 5.97 16 20 N -0.61 -29.65 3.00 -699.00 -2.10 -31.75 16 21 C -0.26 -14.02 9.58 84.03 0.81 -13.21 16 22 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 23 C -0.04 -2.29 4.92 84.86 0.42 -1.87 16 24 N -0.93 -53.24 11.20 21.65 0.24 -53.00 16 25 Si 0.96 43.38 29.59 68.60 2.03 45.41 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 29 C 0.19 8.62 4.34 86.35 0.37 8.99 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.70 6.40 -2.39 -0.02 1.69 16 33 H 0.41 11.26 6.46 -92.71 -0.60 10.66 16 34 H 0.15 3.50 6.40 -2.91 -0.02 3.48 16 35 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.15 3.79 7.65 -2.91 -0.02 3.77 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.96 6.36 -2.39 -0.02 1.94 16 39 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 42 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 44 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 45 H 0.06 3.20 5.58 -2.38 -0.01 3.19 16 Total: -1.00 -65.47 370.65 4.88 -60.58 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.43 Total: 21.22 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 4.76 Total: 5.88 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -3.83 Total: -107.76 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 1.55 Total: -4.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.47 4.88 -60.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025614729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.306 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds