Wall clock time and date at job start Tue Mar 31 2020 20:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46831 * 2 1 4 4 N 1.46501 * 109.47323 * 240.00162 * 2 1 3 5 5 C 1.34777 * 119.99877 * 85.00060 * 4 2 1 6 6 O 1.21554 * 120.00187 * 359.97438 * 5 4 2 7 7 C 1.47853 * 119.99975 * 180.02562 * 5 4 2 8 8 C 1.39553 * 120.12160 * 359.71964 * 7 5 4 9 9 C 1.38200 * 119.88180 * 179.74958 * 8 7 5 10 10 F 1.35097 * 119.94539 * 180.27698 * 9 8 7 11 11 C 1.38531 * 120.11465 * 0.54996 * 9 8 7 12 12 C 1.38531 * 120.25118 * 359.70459 * 11 9 8 13 13 F 1.35093 * 119.94376 * 180.02562 * 12 11 9 14 14 C 1.38202 * 120.11393 * 0.02562 * 12 11 9 15 15 C 1.52999 * 109.46905 * 119.99976 * 2 1 3 16 16 H 1.08999 * 109.49899 * 60.06796 * 15 2 1 17 17 C 1.53039 * 109.49938 * 300.00083 * 15 2 1 18 18 C 1.53045 * 109.53823 * 178.65416 * 17 15 2 19 19 C 1.53190 * 109.31268 * 61.36420 * 18 17 15 20 20 N 1.46922 * 108.77625 * 305.36643 * 19 18 17 21 21 C 1.36943 * 120.63253 * 233.58592 * 20 19 18 22 22 H 1.07990 * 120.00256 * 152.29272 * 21 20 19 23 23 C 1.38815 * 119.99581 * 332.29987 * 21 20 19 24 24 N 1.31620 * 120.00321 * 342.60833 * 23 21 20 25 25 Si 1.86797 * 120.00011 * 162.60927 * 23 21 20 26 26 H 1.48498 * 109.47121 * 94.34418 * 25 23 21 27 27 H 1.48494 * 109.47249 * 214.34635 * 25 23 21 28 28 H 1.48498 * 109.46937 * 334.34891 * 25 23 21 29 29 C 1.46922 * 118.73992 * 53.86210 * 20 19 18 30 30 H 1.09004 * 109.47309 * 299.99906 * 1 2 3 31 31 H 1.09005 * 109.47117 * 60.00109 * 1 2 3 32 32 H 1.08995 * 109.47107 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99482 * 265.00064 * 4 2 1 34 34 H 1.08006 * 120.05500 * 0.02674 * 8 7 5 35 35 H 1.08006 * 119.87802 * 179.72130 * 11 9 8 36 36 H 1.08010 * 120.05873 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.46147 * 58.62757 * 17 15 2 38 38 H 1.09005 * 109.45025 * 298.66312 * 17 15 2 39 39 H 1.09000 * 109.49357 * 301.41438 * 18 17 15 40 40 H 1.09001 * 109.49597 * 181.31936 * 18 17 15 41 41 H 1.08998 * 109.58225 * 185.57666 * 19 18 17 42 42 H 1.08998 * 109.58691 * 65.15545 * 19 18 17 43 43 H 0.96992 * 120.00549 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.59092 * 65.92829 * 29 20 19 45 45 H 1.08999 * 109.59027 * 186.35116 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8576 1.1611 -2.4118 7 6 2.6395 -0.7152 -3.5645 8 6 2.9771 -2.0679 -3.5034 9 6 3.4319 -2.7158 -4.6363 10 9 3.7539 -4.0267 -4.5800 11 6 3.5636 -2.0221 -5.8281 12 6 3.2349 -0.6779 -5.8932 13 9 3.3653 -0.0076 -7.0589 14 6 2.7739 -0.0215 -4.7678 15 6 2.0399 -0.7212 1.2493 16 1 1.6778 -1.7493 1.2491 17 6 1.5301 -0.0003 2.4992 18 6 2.0119 -0.7404 3.7492 19 6 3.5434 -0.7381 3.7806 20 7 4.0432 -1.2982 2.5176 21 6 4.9317 -2.3402 2.5195 22 1 4.9604 -3.0269 1.6866 23 6 5.7954 -2.5137 3.5923 24 7 6.0120 -1.5219 4.4301 25 14 6.6505 -4.1549 3.8470 26 1 7.9922 -4.1178 3.2118 27 1 6.7983 -4.4155 5.3014 28 1 5.8406 -5.2359 3.2301 29 6 3.5762 -0.7151 1.2525 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2490 -1.6317 -1.1526 34 1 2.8790 -2.6085 -2.5736 35 1 3.9237 -2.5312 -6.7100 36 1 2.5175 1.0264 -4.8197 37 1 0.4404 0.0210 2.4871 38 1 1.9131 1.0202 2.5113 39 1 1.6500 -1.7683 3.7255 40 1 1.6289 -0.2398 4.6386 41 1 3.8927 -1.3475 4.6141 42 1 3.9050 0.2837 3.8956 43 1 6.6157 -1.6430 5.1794 44 1 3.9404 0.3086 1.1654 45 1 3.9471 -1.3092 0.4173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025614730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:41 Heat of formation + Delta-G solvation = -104.133289 kcal Electronic energy + Delta-G solvation = -29365.072527 eV Core-core repulsion = 25017.985578 eV Total energy + Delta-G solvation = -4347.086948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.12744 -50.09903 -41.48000 -39.80675 -38.92103 -36.75097 -34.76770 -33.16069 -32.32821 -31.78382 -31.30301 -29.82332 -27.14639 -25.99744 -24.58180 -23.89738 -23.59023 -22.23278 -21.58957 -20.77882 -19.58272 -18.66175 -18.38021 -17.64099 -17.39422 -17.16667 -17.09774 -16.78430 -16.53661 -16.40895 -16.04524 -15.88139 -15.49092 -15.39867 -15.08409 -14.94394 -14.67899 -14.14180 -14.02834 -13.87501 -13.71349 -13.30110 -13.14418 -13.03695 -12.98206 -12.95903 -12.77513 -12.57841 -12.25002 -12.21191 -11.95990 -11.75168 -11.49715 -11.35497 -11.12838 -10.97560 -10.52142 -10.37057 -10.06756 -9.96261 -8.66275 -7.85816 -5.31395 -0.61490 -0.21652 1.47052 1.49034 1.51964 1.58419 1.94165 2.42391 2.51877 2.69385 3.13553 3.28964 3.37044 3.55402 3.61343 3.81821 3.84867 3.94666 4.02153 4.07684 4.27701 4.37787 4.46950 4.51655 4.58242 4.66982 4.70456 4.78578 4.80444 4.87322 4.88636 4.90093 4.97472 5.07391 5.13256 5.24529 5.29511 5.35676 5.46447 5.50625 5.53889 5.59747 5.68888 5.80481 6.39089 6.43150 7.06514 7.16141 7.87848 8.39708 9.20238 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.003236 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.975165 B = 8650.615016 C =10490.271763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.070 0.930 4 N -0.703 5.703 5 C 0.561 3.439 6 O -0.566 6.566 7 C -0.082 4.082 8 C -0.123 4.123 9 C 0.123 3.877 10 F -0.128 7.128 11 C -0.156 4.156 12 C 0.122 3.878 13 F -0.129 7.129 14 C -0.110 4.110 15 C -0.095 4.095 16 H 0.082 0.918 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.608 5.608 21 C -0.261 4.261 22 H 0.071 0.929 23 C -0.052 4.052 24 N -0.937 5.937 25 Si 0.964 3.036 26 H -0.289 1.289 27 H -0.295 1.295 28 H -0.265 1.265 29 C 0.153 3.847 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.411 0.589 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.152 0.848 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.051 0.949 42 H -0.012 1.012 43 H 0.248 0.752 44 H -0.003 1.003 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 -1.442 -17.655 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.088 0.912 4 N -0.354 5.354 5 C 0.348 3.652 6 O -0.446 6.446 7 C -0.085 4.085 8 C -0.143 4.143 9 C 0.104 3.896 10 F -0.107 7.107 11 C -0.175 4.175 12 C 0.103 3.897 13 F -0.107 7.107 14 C -0.129 4.129 15 C -0.115 4.115 16 H 0.100 0.900 17 C -0.136 4.136 18 C -0.169 4.169 19 C 0.046 3.954 20 N -0.331 5.331 21 C -0.391 4.391 22 H 0.089 0.911 23 C -0.247 4.247 24 N -0.583 5.583 25 Si 0.792 3.208 26 H -0.216 1.216 27 H -0.221 1.221 28 H -0.190 1.190 29 C 0.027 3.973 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.181 0.819 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.007 0.993 43 H 0.058 0.942 44 H 0.015 0.985 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.719 -0.651 -17.570 21.130 hybrid contribution 1.314 -0.967 0.353 1.669 sum -10.405 -1.618 -17.218 20.182 Atomic orbital electron populations 1.22141 0.93295 1.03100 1.02672 1.20968 0.95117 0.96290 0.82659 0.91228 1.45977 1.65757 1.14694 1.09013 1.18183 0.77475 0.86086 0.83464 1.90775 1.51753 1.16647 1.85415 1.19400 1.02075 0.93414 0.93612 1.21533 0.99339 0.93866 0.99533 1.17084 0.99922 0.78755 0.93873 1.91578 1.90184 1.31939 1.96950 1.21426 1.03060 0.93304 0.99735 1.17038 1.00981 0.89922 0.81792 1.91558 1.93513 1.80094 1.45555 1.21320 0.98934 1.02145 0.90539 1.21841 0.95963 1.00123 0.93587 0.89986 1.21447 1.00952 0.98133 0.93034 1.21999 0.96532 1.00233 0.98108 1.20640 0.91048 0.94645 0.89035 1.44329 1.49908 1.37832 1.01068 1.19546 1.11187 1.02832 1.05523 0.91114 1.25788 0.98485 1.00406 1.00006 1.70201 1.39007 1.31289 1.17812 0.85314 0.78350 0.80516 0.76598 1.21574 1.22131 1.18978 1.21079 0.92869 0.94867 0.88449 0.89983 0.93060 0.91054 0.75147 0.81919 0.80619 0.83005 0.89310 0.93175 0.92536 0.91349 0.93056 0.99347 0.94249 0.98479 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.13 71.98 0.66 -2.43 16 2 C 0.15 3.83 2.16 44.99 0.10 3.93 16 3 H 0.07 2.05 7.58 -2.38 -0.02 2.04 16 4 N -0.70 -15.93 4.43 -445.39 -1.97 -17.90 16 5 C 0.56 14.09 7.74 86.79 0.67 14.76 16 6 O -0.57 -18.02 16.01 -3.88 -0.06 -18.08 16 7 C -0.08 -1.66 5.87 -20.10 -0.12 -1.78 16 8 C -0.12 -2.08 9.52 22.58 0.21 -1.87 16 9 C 0.12 2.01 7.29 22.33 0.16 2.18 16 10 F -0.13 -2.28 17.26 44.97 0.78 -1.50 16 11 C -0.16 -2.25 10.00 22.41 0.22 -2.03 16 12 C 0.12 2.08 7.29 22.33 0.16 2.24 16 13 F -0.13 -2.30 17.26 44.97 0.78 -1.52 16 14 C -0.11 -2.14 9.57 22.58 0.22 -1.92 16 15 C -0.09 -2.73 1.98 -10.57 -0.02 -2.75 16 16 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 17 C -0.10 -2.80 4.85 30.62 0.15 -2.66 16 18 C -0.13 -4.52 6.08 30.67 0.19 -4.33 16 19 C 0.17 8.14 5.31 86.36 0.46 8.60 16 20 N -0.61 -29.49 2.99 -698.28 -2.09 -31.57 16 21 C -0.26 -13.88 9.58 84.03 0.81 -13.07 16 22 H 0.07 3.59 7.89 -2.92 -0.02 3.57 16 23 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 24 N -0.94 -55.29 11.19 21.65 0.24 -55.05 16 25 Si 0.96 43.98 29.59 68.60 2.03 46.01 16 26 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 29 C 0.15 5.97 5.58 86.51 0.48 6.45 16 30 H 0.08 1.48 6.40 -2.39 -0.02 1.46 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.41 7.67 6.47 -92.71 -0.60 7.07 16 34 H 0.16 2.22 6.40 -2.91 -0.02 2.20 16 35 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.15 3.07 7.65 -2.91 -0.02 3.05 16 37 H 0.09 1.96 6.36 -2.39 -0.02 1.95 16 38 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 2.77 6.04 -2.39 -0.01 2.76 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.05 2.05 7.47 -2.39 -0.02 2.03 16 Total: -1.00 -66.96 370.68 4.89 -62.06 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.43 Total: 14.66 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 4.77 Total: 2.89 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -3.82 Total: -104.52 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.06 Total: -18.08 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 1.55 Total: -3.02 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.96 4.89 -62.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025614730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.070 kcal (2) G-P(sol) polarization free energy of solvation -66.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds