Wall clock time and date at job start Tue Mar 31 2020 20:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46892 * 2 1 4 4 N 1.46499 * 109.46931 * 119.99944 * 2 1 3 5 5 C 1.34774 * 120.00128 * 274.99662 * 4 2 1 6 6 O 1.21551 * 119.99919 * 359.97438 * 5 4 2 7 7 C 1.47856 * 119.99987 * 180.02562 * 5 4 2 8 8 C 1.39549 * 120.12222 * 359.72213 * 7 5 4 9 9 C 1.38201 * 119.87694 * 179.76649 * 8 7 5 10 10 F 1.35097 * 119.93800 * 180.25562 * 9 8 7 11 11 C 1.38533 * 120.12164 * 0.51005 * 9 8 7 12 12 C 1.38528 * 120.24357 * 359.74656 * 11 9 8 13 13 F 1.35092 * 119.93966 * 180.02562 * 12 11 9 14 14 C 1.38205 * 120.11924 * 359.97438 * 12 11 9 15 15 C 1.53004 * 109.46620 * 239.99875 * 2 1 3 16 16 H 1.09000 * 109.49407 * 184.93052 * 15 2 1 17 17 C 1.53039 * 109.49592 * 64.84033 * 15 2 1 18 18 C 1.53043 * 109.53552 * 178.67882 * 17 15 2 19 19 C 1.53195 * 109.30953 * 61.36489 * 18 17 15 20 20 N 1.46919 * 108.77622 * 305.36083 * 19 18 17 21 21 C 1.36931 * 120.63263 * 233.58457 * 20 19 18 22 22 H 1.08010 * 119.99980 * 151.85044 * 21 20 19 23 23 C 1.38809 * 120.00448 * 331.85283 * 21 20 19 24 24 N 1.31625 * 119.99776 * 343.06533 * 23 21 20 25 25 Si 1.86801 * 120.00418 * 163.06577 * 23 21 20 26 26 H 1.48491 * 109.47192 * 89.99952 * 25 23 21 27 27 H 1.48501 * 109.46879 * 210.00261 * 25 23 21 28 28 H 1.48503 * 109.46866 * 329.99796 * 25 23 21 29 29 C 1.46933 * 118.73613 * 53.61494 * 20 19 18 30 30 H 1.09004 * 109.47198 * 59.99647 * 1 2 3 31 31 H 1.08996 * 109.47550 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46829 * 300.00289 * 1 2 3 33 33 H 0.96994 * 119.99791 * 95.00216 * 4 2 1 34 34 H 1.08004 * 120.05926 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.87445 * 179.76376 * 11 9 8 36 36 H 1.08000 * 120.05691 * 180.02562 * 14 12 11 37 37 H 1.09001 * 109.46010 * 298.69923 * 17 15 2 38 38 H 1.08998 * 109.46264 * 58.66306 * 17 15 2 39 39 H 1.08997 * 109.49734 * 301.41168 * 18 17 15 40 40 H 1.09003 * 109.52105 * 181.33180 * 18 17 15 41 41 H 1.09007 * 109.58078 * 185.57428 * 19 18 17 42 42 H 1.09006 * 109.58592 * 65.15551 * 19 18 17 43 43 H 0.96995 * 119.99846 * 179.97438 * 24 23 21 44 44 H 1.09001 * 109.58325 * 186.60264 * 29 20 19 45 45 H 1.08994 * 109.58657 * 66.17241 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8585 1.1612 2.4116 7 6 2.6404 -0.7151 3.5642 8 6 2.9680 -2.0704 3.5058 9 6 3.4332 -2.7156 4.6359 10 9 3.7556 -4.0263 4.5794 11 6 3.5647 -2.0220 5.8279 12 6 3.2359 -0.6779 5.8930 13 9 3.3669 -0.0074 7.0584 14 6 2.7752 -0.0214 4.7675 15 6 2.0399 -0.7213 -1.2493 16 1 3.1263 -0.7987 -1.2067 17 6 1.6319 0.0665 -2.4962 18 6 2.1697 -0.6367 -3.7446 19 6 1.5606 -2.0393 -3.8380 20 7 1.8247 -2.7541 -2.5818 21 6 2.4273 -3.9836 -2.5922 22 1 3.0179 -4.3027 -1.7461 23 6 2.2791 -4.8201 -3.6900 24 7 1.3169 -4.5990 -4.5606 25 14 3.4451 -6.2593 -3.9320 26 1 2.8951 -7.4611 -3.2551 27 1 3.5971 -6.5346 -5.3833 28 1 4.7700 -5.9261 -3.3500 29 6 1.4294 -2.1247 -1.3143 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 2.8620 -2.6130 2.5779 35 1 3.9250 -2.5311 6.7096 36 1 2.5196 1.0267 4.8192 37 1 0.5447 0.1224 -2.5509 38 1 2.0447 1.0738 -2.4407 39 1 3.2549 -0.7149 -3.6791 40 1 1.8991 -0.0628 -4.6310 41 1 2.0143 -2.5801 -4.6686 42 1 0.4847 -1.9608 -3.9946 43 1 1.2136 -5.1833 -5.3279 44 1 1.7966 -2.7220 -0.4797 45 1 0.3429 -2.0532 -1.2652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025614732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:48 Heat of formation + Delta-G solvation = -101.538857 kcal Electronic energy + Delta-G solvation = -29350.410138 eV Core-core repulsion = 25003.435693 eV Total energy + Delta-G solvation = -4346.974445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.12632 -50.10261 -41.51231 -39.90140 -38.94159 -36.71791 -34.76244 -33.16518 -32.27182 -31.84996 -31.33700 -29.43925 -27.20088 -26.16090 -24.79933 -23.91932 -23.83980 -22.32029 -21.47786 -20.30919 -19.55592 -18.62142 -18.37894 -17.63707 -17.42283 -17.15233 -17.04594 -16.78938 -16.51985 -16.41063 -16.15672 -15.77550 -15.68134 -15.47078 -15.14463 -14.98234 -14.69180 -14.08437 -13.97140 -13.88424 -13.72309 -13.30069 -13.15795 -13.03058 -13.00354 -12.97322 -12.75104 -12.66957 -12.28494 -12.02929 -11.94900 -11.68284 -11.49305 -11.34100 -11.09953 -11.01481 -10.49723 -10.37823 -10.08608 -9.96712 -8.62292 -7.84538 -5.29298 -0.62159 -0.22121 1.47447 1.49988 1.51042 1.58336 1.93233 2.41345 2.52819 2.68929 3.13325 3.30688 3.35995 3.57745 3.62614 3.81218 3.84628 3.94000 4.01072 4.06932 4.27347 4.37424 4.44159 4.49226 4.58161 4.67201 4.69751 4.72587 4.80651 4.87413 4.88191 4.90914 4.99648 5.06945 5.16333 5.22063 5.32198 5.37446 5.44376 5.51244 5.52928 5.60616 5.70625 5.82119 6.39481 6.42577 7.03707 7.18123 7.90273 8.41573 9.21442 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.003106 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.143298 B = 9014.049040 C =11005.708446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 H 0.086 0.914 4 N -0.706 5.706 5 C 0.562 3.438 6 O -0.563 6.563 7 C -0.081 4.081 8 C -0.125 4.125 9 C 0.123 3.877 10 F -0.129 7.129 11 C -0.155 4.155 12 C 0.123 3.877 13 F -0.128 7.128 14 C -0.107 4.107 15 C -0.099 4.099 16 H 0.068 0.932 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.174 3.826 20 N -0.609 5.609 21 C -0.260 4.260 22 H 0.070 0.930 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.270 1.270 29 C 0.149 3.851 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.409 0.591 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.155 0.845 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.049 0.951 42 H -0.004 1.004 43 H 0.248 0.752 44 H 0.054 0.946 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 8.679 18.237 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 H 0.104 0.896 4 N -0.358 5.358 5 C 0.349 3.651 6 O -0.443 6.443 7 C -0.085 4.085 8 C -0.145 4.145 9 C 0.103 3.897 10 F -0.108 7.108 11 C -0.175 4.175 12 C 0.104 3.896 13 F -0.106 7.106 14 C -0.127 4.127 15 C -0.119 4.119 16 H 0.086 0.914 17 C -0.135 4.135 18 C -0.171 4.171 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.390 4.390 22 H 0.087 0.913 23 C -0.245 4.245 24 N -0.581 5.581 25 Si 0.790 3.210 26 H -0.212 1.212 27 H -0.223 1.223 28 H -0.195 1.195 29 C 0.023 3.977 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.247 0.753 34 H 0.177 0.823 35 H 0.194 0.806 36 H 0.173 0.827 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.014 0.986 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.966 9.377 18.150 20.643 hybrid contribution 0.507 -1.632 -0.431 1.762 sum 3.473 7.745 17.719 19.647 Atomic orbital electron populations 1.22221 0.94664 1.02557 1.02444 1.20942 0.94572 0.96520 0.82560 0.89551 1.46082 1.65724 1.14725 1.09244 1.18169 0.77456 0.86111 0.83333 1.90772 1.51705 1.16498 1.85314 1.19392 1.02093 0.93249 0.93744 1.21528 0.99440 0.93979 0.99559 1.17104 0.99916 0.78729 0.93948 1.91581 1.90170 1.32072 1.96948 1.21423 1.03092 0.93375 0.99563 1.17029 1.00918 0.89855 0.81824 1.91561 1.93488 1.80044 1.45554 1.21317 0.98770 1.02243 0.90343 1.21754 1.00347 0.96177 0.93647 0.91373 1.21411 1.00919 0.98187 0.93011 1.22013 0.99908 0.96966 0.98165 1.20611 0.95221 0.90246 0.89110 1.44269 1.69989 1.17362 1.01554 1.19508 1.22894 0.92876 1.03706 0.91278 1.25741 0.98822 1.00285 0.99694 1.70185 1.31938 1.40636 1.15309 0.85375 0.79506 0.79726 0.76437 1.21206 1.22291 1.19493 1.21150 0.96328 0.91938 0.88241 0.90515 0.92091 0.92779 0.75346 0.82349 0.80622 0.82743 0.91732 0.90650 0.93287 0.91372 0.93289 0.98600 0.94278 0.92777 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 8.76 71.98 0.63 -3.27 16 2 C 0.16 3.94 2.36 44.99 0.11 4.05 16 3 H 0.09 2.22 7.58 -2.39 -0.02 2.20 16 4 N -0.71 -16.11 4.96 -445.39 -2.21 -18.32 16 5 C 0.56 13.53 7.74 86.79 0.67 14.21 16 6 O -0.56 -16.88 16.01 -3.88 -0.06 -16.94 16 7 C -0.08 -1.59 5.87 -20.10 -0.12 -1.71 16 8 C -0.13 -2.13 9.52 22.58 0.21 -1.92 16 9 C 0.12 2.00 7.29 22.33 0.16 2.16 16 10 F -0.13 -2.37 17.26 44.97 0.78 -1.59 16 11 C -0.15 -2.15 10.00 22.41 0.22 -1.93 16 12 C 0.12 1.97 7.29 22.33 0.16 2.13 16 13 F -0.13 -2.14 17.26 44.97 0.78 -1.36 16 14 C -0.11 -1.95 9.57 22.58 0.22 -1.73 16 15 C -0.10 -2.87 2.27 -10.72 -0.02 -2.90 16 16 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.10 -2.81 4.89 30.62 0.15 -2.66 16 18 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 19 C 0.17 8.05 5.30 86.36 0.46 8.51 16 20 N -0.61 -28.63 2.99 -699.09 -2.09 -30.72 16 21 C -0.26 -13.57 9.58 84.03 0.81 -12.76 16 22 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 23 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 24 N -0.93 -54.17 11.20 21.65 0.24 -53.93 16 25 Si 0.96 43.67 29.59 68.60 2.03 45.70 16 26 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 29 C 0.15 5.40 5.26 86.36 0.45 5.85 16 30 H 0.08 1.76 6.59 -2.38 -0.02 1.74 16 31 H 0.06 1.55 6.23 -2.39 -0.01 1.54 16 32 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.41 8.34 5.30 -92.71 -0.49 7.85 16 34 H 0.16 2.36 6.40 -2.91 -0.02 2.34 16 35 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.15 2.85 7.65 -2.91 -0.02 2.83 16 37 H 0.06 1.83 6.62 -2.39 -0.02 1.82 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 2.62 6.06 -2.38 -0.01 2.60 16 42 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 43 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.05 1.84 6.75 -2.39 -0.02 1.82 16 45 H 0.02 0.91 6.06 -2.39 -0.01 0.90 16 Total: -1.00 -63.89 365.64 4.72 -59.17 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.55 Total: 16.68 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.72 Total: 1.31 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -4.06 Total: -102.96 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.06 Total: -16.94 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 1.55 Total: -2.96 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -63.89 4.72 -59.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025614732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.371 kcal (2) G-P(sol) polarization free energy of solvation -63.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds