Wall clock time and date at job start Tue Mar 31 2020 21:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81399 * 103.00200 * 2 1 4 4 H 1.09002 * 109.47270 * 305.00078 * 3 2 1 5 5 C 1.53002 * 109.47109 * 64.99853 * 3 2 1 6 6 C 1.50702 * 109.47194 * 185.00045 * 3 2 1 7 7 O 1.21279 * 119.99765 * 340.00166 * 6 3 2 8 8 N 1.34773 * 119.99573 * 159.99943 * 6 3 2 9 9 C 1.48144 * 127.83304 * 179.97438 * 8 6 3 10 10 C 1.54394 * 104.62105 * 219.60839 * 9 8 6 11 11 H 1.08997 * 110.43347 * 95.05105 * 10 9 8 12 12 C 1.50698 * 110.34294 * 217.26778 * 10 9 8 13 13 C 1.34668 * 125.99404 * 30.50819 * 12 10 9 14 14 N 1.36881 * 106.81875 * 180.02562 * 13 12 10 15 15 C 1.46498 * 126.39751 * 180.02562 * 14 13 12 16 16 C 1.35044 * 107.20726 * 359.97438 * 14 13 12 17 17 N 1.30501 * 108.69892 * 0.02562 * 16 14 13 18 18 C 1.54291 * 104.95472 * 336.13575 * 10 9 8 19 19 H 1.08996 * 110.34071 * 241.12629 * 18 10 9 20 20 N 1.46496 * 110.34090 * 118.87164 * 18 10 9 21 21 C 1.36932 * 120.00431 * 154.99803 * 20 18 10 22 22 H 1.08008 * 119.99811 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00497 * 179.97438 * 21 20 18 24 24 N 1.31612 * 119.99837 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99957 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46854 * 90.00159 * 25 23 21 27 27 H 1.48502 * 109.47223 * 209.99850 * 25 23 21 28 28 H 1.48498 * 109.47370 * 330.00162 * 25 23 21 29 29 C 1.48142 * 127.84104 * 359.97438 * 8 6 3 30 30 H 1.08994 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47021 * 300.00273 * 1 2 3 32 32 H 1.08999 * 109.47174 * 59.99542 * 1 2 3 33 33 H 1.08991 * 109.47187 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47147 * 300.00490 * 5 3 2 35 35 H 1.09002 * 109.46870 * 59.99981 * 5 3 2 36 36 H 1.09007 * 110.40895 * 100.82260 * 9 8 6 37 37 H 1.08996 * 110.41429 * 338.39382 * 9 8 6 38 38 H 1.08003 * 126.59021 * 0.02562 * 13 12 10 39 39 H 1.09001 * 109.47253 * 89.99439 * 15 14 13 40 40 H 1.08997 * 109.46870 * 209.99588 * 15 14 13 41 41 H 1.09004 * 109.46937 * 329.99744 * 15 14 13 42 42 H 1.07996 * 125.65229 * 180.02562 * 16 14 13 43 43 H 0.97009 * 120.00052 * 334.99836 * 20 18 10 44 44 H 0.97002 * 119.99756 * 179.97438 * 24 23 21 45 45 H 1.08998 * 110.41259 * 21.60839 * 29 8 6 46 46 H 1.09003 * 110.50462 * 259.21940 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7143 1.9385 -0.1238 7 8 4.4552 1.0199 0.1555 8 7 4.2253 3.1123 -0.5451 9 6 5.6514 3.4690 -0.7285 10 6 5.7579 4.9231 -0.2205 11 1 6.0779 4.9397 0.8213 12 6 6.7194 5.7076 -1.0755 13 6 6.9610 5.5048 -2.3847 14 7 7.8950 6.4312 -2.7632 15 6 8.4656 6.5931 -4.1028 16 6 8.1914 7.1687 -1.6715 17 7 7.4847 6.7302 -0.6658 18 6 4.3317 5.4965 -0.3527 19 1 4.3266 6.3457 -1.0360 20 7 3.8193 5.8952 0.9605 21 6 2.8502 6.8581 1.0540 22 1 2.4639 7.3240 0.1594 23 6 2.3644 7.2355 2.2983 24 7 2.8355 6.6681 3.3884 25 14 1.0429 8.5495 2.4257 26 1 -0.2968 7.9110 2.3723 27 1 1.1926 9.2793 3.7104 28 1 1.1822 9.5029 1.2957 29 6 3.4884 4.3386 -0.9296 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.9884 3.4635 1.3076 34 1 0.6636 2.2778 1.3969 35 1 2.2354 1.9149 2.1492 36 1 5.9246 3.4136 -1.7823 37 1 6.2870 2.8117 -0.1352 38 1 6.5055 4.7553 -3.0150 39 1 7.8560 7.2923 -4.6753 40 1 9.4814 6.9796 -4.0206 41 1 8.4837 5.6280 -4.6090 42 1 8.8964 7.9860 -1.6364 43 1 4.1666 5.4770 1.7640 44 1 2.4962 6.9321 4.2580 45 1 2.4918 4.3375 -0.4881 46 1 3.4225 4.4200 -2.0146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070470621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:47 Heat of formation + Delta-G solvation = 58.175927 kcal Electronic energy + Delta-G solvation = -27830.108931 eV Core-core repulsion = 24076.193376 eV Total energy + Delta-G solvation = -3753.915555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99485 -39.71455 -37.45328 -34.13166 -33.90438 -33.18322 -31.46790 -30.60139 -28.82046 -28.28734 -27.42881 -26.74409 -24.90828 -23.74718 -22.83010 -21.10211 -20.74504 -19.34341 -19.11224 -17.50560 -16.88931 -16.78244 -16.33409 -15.72345 -15.44195 -14.92488 -14.76789 -14.37369 -14.13057 -14.08268 -13.89339 -13.50075 -13.37254 -13.28672 -13.10425 -13.02474 -12.85455 -12.62689 -12.31240 -12.22781 -11.80851 -11.66264 -11.50979 -11.34504 -11.06199 -10.83825 -10.73690 -10.59101 -10.11370 -9.78703 -9.73919 -9.64247 -9.55975 -9.41700 -9.07076 -8.41286 -8.19576 -7.56973 -6.98055 -5.79154 -3.09043 1.57535 2.12873 2.58748 2.80717 2.89353 3.27953 3.33266 3.40275 3.46558 3.48353 4.50571 4.53751 4.64202 4.67330 4.88012 4.88872 5.02507 5.08221 5.12075 5.12431 5.14039 5.20448 5.27973 5.35100 5.58288 5.59963 5.63964 5.69180 5.79758 5.83555 5.88767 6.01421 6.04474 6.21192 6.26539 6.34491 6.42541 6.51167 6.59179 6.85626 6.94162 7.26392 7.66684 7.83338 8.29113 8.37692 8.39636 9.49677 10.04988 10.40189 11.42480 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007035 B = 0.004860 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3979.272141 B = 5760.292233 C = 9075.387357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.202 6.202 3 C -0.079 4.079 4 H 0.103 0.897 5 C -0.145 4.145 6 C 0.559 3.441 7 O -0.534 6.534 8 N -0.608 5.608 9 C 0.119 3.881 10 C -0.030 4.030 11 H 0.098 0.902 12 C 0.035 3.965 13 C -0.064 4.064 14 N -0.468 5.468 15 C 0.076 3.924 16 C 0.177 3.823 17 N -0.476 5.476 18 C 0.183 3.817 19 H 0.068 0.932 20 N -0.709 5.709 21 C -0.244 4.244 22 H 0.070 0.930 23 C -0.006 4.006 24 N -0.926 5.926 25 Si 0.903 3.097 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.067 3.933 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.172 0.828 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.202 0.798 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.089 0.911 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.487 -5.335 -15.881 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.024 5.976 3 C -0.211 4.211 4 H 0.121 0.879 5 C -0.204 4.204 6 C 0.346 3.654 7 O -0.411 6.411 8 N -0.341 5.341 9 C -0.005 4.005 10 C -0.051 4.051 11 H 0.117 0.883 12 C -0.095 4.095 13 C -0.196 4.196 14 N -0.152 5.152 15 C -0.067 4.067 16 C -0.105 4.105 17 N -0.193 5.193 18 C 0.070 3.930 19 H 0.086 0.914 20 N -0.349 5.349 21 C -0.375 4.375 22 H 0.088 0.912 23 C -0.203 4.203 24 N -0.573 5.573 25 Si 0.734 3.266 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.059 4.059 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.189 0.811 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.218 0.782 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.465 -6.312 -15.038 17.200 hybrid contribution -1.544 1.611 -0.601 2.311 sum 3.921 -4.701 -15.639 16.795 Atomic orbital electron populations 1.23512 0.95839 1.06230 1.05034 1.87170 1.04780 1.07730 1.97939 1.23268 0.97009 0.96832 1.03996 0.87854 1.22032 1.01134 1.03320 0.93925 1.19151 0.88580 0.81121 0.76541 1.90703 1.60607 1.39756 1.50083 1.48717 1.08301 1.12093 1.65006 1.22311 0.82564 0.95102 1.00496 1.20712 0.93950 0.91184 0.99273 0.88341 1.20319 1.00118 0.97419 0.91657 1.22374 0.99747 0.99755 0.97706 1.45371 1.32701 1.26816 1.10314 1.21979 0.99536 1.03630 0.81600 1.24996 1.03573 1.00396 0.81579 1.70238 1.08622 1.11431 1.29031 1.21075 0.88372 0.93424 0.90123 0.91420 1.42444 1.45598 1.45537 1.01347 1.19186 1.12654 1.13229 0.92458 0.91212 1.24715 1.00190 0.99952 0.95437 1.69663 1.45386 1.45088 0.97150 0.86261 0.81671 0.81608 0.77025 1.21786 1.21784 1.20807 1.23717 0.98771 0.84929 0.98500 0.88123 0.90241 0.90711 0.88768 0.91850 0.90943 0.91330 0.90016 0.81109 0.90746 0.89679 0.89891 0.78157 0.77912 0.93419 0.89283 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.45 101.05 1.06 -0.37 16 2 S -0.20 -2.98 21.04 -107.50 -2.26 -5.24 16 3 C -0.08 -1.22 2.42 -27.88 -0.07 -1.29 16 4 H 0.10 1.40 7.60 -51.92 -0.39 1.01 16 5 C -0.15 -2.32 8.98 37.16 0.33 -1.99 16 6 C 0.56 9.97 7.09 -10.99 -0.08 9.89 16 7 O -0.53 -11.12 16.31 5.56 0.09 -11.03 16 8 N -0.61 -9.96 3.32 -169.28 -0.56 -10.52 16 9 C 0.12 1.81 6.53 -2.41 -0.02 1.80 16 10 C -0.03 -0.51 3.35 -90.37 -0.30 -0.81 16 11 H 0.10 1.96 7.67 -51.93 -0.40 1.56 16 12 C 0.03 0.56 5.90 -82.85 -0.49 0.07 16 13 C -0.06 -0.80 10.56 -16.56 -0.17 -0.97 16 14 N -0.47 -4.99 3.15 -125.99 -0.40 -5.38 16 15 C 0.08 0.42 11.18 59.85 0.67 1.09 16 16 C 0.18 2.24 12.56 -90.37 -1.14 1.11 16 17 N -0.48 -8.22 11.25 -10.87 -0.12 -8.35 16 18 C 0.18 3.41 3.36 -66.51 -0.22 3.19 16 19 H 0.07 1.32 7.65 -51.93 -0.40 0.92 16 20 N -0.71 -16.72 5.11 -52.05 -0.27 -16.98 16 21 C -0.24 -6.37 9.96 -15.06 -0.15 -6.52 16 22 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 24 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 25 Si 0.90 21.69 29.55 -169.99 -5.02 16.67 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.07 1.06 6.44 -2.39 -0.02 1.05 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.80 7.14 -51.92 -0.37 0.43 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.09 1.75 6.96 -51.93 -0.36 1.39 16 34 H 0.06 0.88 6.92 -51.93 -0.36 0.52 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.88 6.03 -51.92 -0.31 0.56 16 37 H 0.08 1.33 7.88 -51.93 -0.41 0.92 16 38 H 0.17 1.69 6.92 -52.48 -0.36 1.33 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.39 10.05 7.56 -40.82 -0.31 9.74 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.09 1.52 5.95 -51.93 -0.31 1.21 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 387.86 15.07 5.85 5.85 Total: -1.00 -34.34 387.86 -9.57 -43.91 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.91 Total: 11.45 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.69 Total: 5.97 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -0.62 Total: -67.57 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.26 Total: -5.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.34 -9.57 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070470621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.089 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds