Wall clock time and date at job start Tue Mar 31 2020 21:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81399 * 103.00200 * 2 1 4 4 H 1.09002 * 109.47270 * 305.00078 * 3 2 1 5 5 C 1.53002 * 109.47109 * 64.99853 * 3 2 1 6 6 C 1.50702 * 109.47194 * 185.00045 * 3 2 1 7 7 O 1.21279 * 119.99765 * 340.00166 * 6 3 2 8 8 N 1.34773 * 119.99573 * 159.99943 * 6 3 2 9 9 C 1.48144 * 127.83304 * 179.97438 * 8 6 3 10 10 C 1.54394 * 104.62105 * 219.60839 * 9 8 6 11 11 H 1.08997 * 110.43347 * 95.05105 * 10 9 8 12 12 C 1.50698 * 110.34294 * 217.26778 * 10 9 8 13 13 C 1.34668 * 125.99404 * 30.50819 * 12 10 9 14 14 N 1.36881 * 106.81875 * 180.02562 * 13 12 10 15 15 C 1.46498 * 126.39751 * 180.02562 * 14 13 12 16 16 C 1.35044 * 107.20726 * 359.97438 * 14 13 12 17 17 N 1.30501 * 108.69892 * 0.02562 * 16 14 13 18 18 C 1.54291 * 104.95472 * 336.13575 * 10 9 8 19 19 H 1.08996 * 110.34071 * 241.12629 * 18 10 9 20 20 N 1.46496 * 110.34090 * 118.87164 * 18 10 9 21 21 C 1.36932 * 120.00431 * 154.99803 * 20 18 10 22 22 H 1.08008 * 119.99811 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00497 * 179.97438 * 21 20 18 24 24 N 1.31612 * 119.99837 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99957 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46854 * 90.00159 * 25 23 21 27 27 H 1.48502 * 109.47223 * 209.99850 * 25 23 21 28 28 H 1.48498 * 109.47370 * 330.00162 * 25 23 21 29 29 C 1.48142 * 127.84104 * 359.97438 * 8 6 3 30 30 H 1.08994 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47021 * 300.00273 * 1 2 3 32 32 H 1.08999 * 109.47174 * 59.99542 * 1 2 3 33 33 H 1.08991 * 109.47187 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47147 * 300.00490 * 5 3 2 35 35 H 1.09002 * 109.46870 * 59.99981 * 5 3 2 36 36 H 1.09007 * 110.40895 * 100.82260 * 9 8 6 37 37 H 1.08996 * 110.41429 * 338.39382 * 9 8 6 38 38 H 1.08003 * 126.59021 * 0.02562 * 13 12 10 39 39 H 1.09001 * 109.47253 * 89.99439 * 15 14 13 40 40 H 1.08997 * 109.46870 * 209.99588 * 15 14 13 41 41 H 1.09004 * 109.46937 * 329.99744 * 15 14 13 42 42 H 1.07996 * 125.65229 * 180.02562 * 16 14 13 43 43 H 0.97009 * 120.00052 * 334.99836 * 20 18 10 44 44 H 0.97002 * 119.99756 * 179.97438 * 24 23 21 45 45 H 1.08998 * 110.41259 * 21.60839 * 29 8 6 46 46 H 1.09003 * 110.50462 * 259.21940 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7143 1.9385 -0.1238 7 8 4.4552 1.0199 0.1555 8 7 4.2253 3.1123 -0.5451 9 6 5.6514 3.4690 -0.7285 10 6 5.7579 4.9231 -0.2205 11 1 6.0779 4.9397 0.8213 12 6 6.7194 5.7076 -1.0755 13 6 6.9610 5.5048 -2.3847 14 7 7.8950 6.4312 -2.7632 15 6 8.4656 6.5931 -4.1028 16 6 8.1914 7.1687 -1.6715 17 7 7.4847 6.7302 -0.6658 18 6 4.3317 5.4965 -0.3527 19 1 4.3266 6.3457 -1.0360 20 7 3.8193 5.8952 0.9605 21 6 2.8502 6.8581 1.0540 22 1 2.4639 7.3240 0.1594 23 6 2.3644 7.2355 2.2983 24 7 2.8355 6.6681 3.3884 25 14 1.0429 8.5495 2.4257 26 1 -0.2968 7.9110 2.3723 27 1 1.1926 9.2793 3.7104 28 1 1.1822 9.5029 1.2957 29 6 3.4884 4.3386 -0.9296 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.9884 3.4635 1.3076 34 1 0.6636 2.2778 1.3969 35 1 2.2354 1.9149 2.1492 36 1 5.9246 3.4136 -1.7823 37 1 6.2870 2.8117 -0.1352 38 1 6.5055 4.7553 -3.0150 39 1 7.8560 7.2923 -4.6753 40 1 9.4814 6.9796 -4.0206 41 1 8.4837 5.6280 -4.6090 42 1 8.8964 7.9860 -1.6364 43 1 4.1666 5.4770 1.7640 44 1 2.4962 6.9321 4.2580 45 1 2.4918 4.3375 -0.4881 46 1 3.4225 4.4200 -2.0146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070470621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:46 Heat of formation + Delta-G solvation = 36.303185 kcal Electronic energy + Delta-G solvation = -27831.057404 eV Core-core repulsion = 24076.193376 eV Total energy + Delta-G solvation = -3754.864028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.98627 -41.09304 -38.90037 -35.73449 -35.10299 -34.43605 -33.05006 -32.10892 -29.68318 -29.40722 -28.86669 -27.59035 -26.32608 -25.45692 -24.15063 -22.15393 -22.03456 -20.64492 -20.42326 -19.08633 -18.34658 -17.95158 -17.57474 -16.97553 -16.49221 -16.36898 -16.16169 -15.60165 -15.50988 -15.21263 -15.13852 -14.84367 -14.69635 -14.42190 -14.32996 -13.95036 -13.68901 -13.62391 -13.40382 -13.31518 -13.27770 -13.05546 -12.96786 -12.80221 -12.61878 -12.43104 -12.37305 -12.14273 -11.92548 -11.67281 -11.08794 -10.90516 -10.83864 -10.75497 -10.38638 -9.84308 -9.29468 -8.86393 -8.71028 -7.88021 -5.16943 0.45916 1.18878 1.44877 1.49165 1.51148 1.58729 1.63225 1.98080 2.07056 2.22276 2.59413 3.33000 3.42815 3.51946 3.79921 3.81062 3.93266 3.99125 4.03396 4.08467 4.13887 4.33784 4.35004 4.38840 4.39380 4.50905 4.54213 4.57105 4.61270 4.66507 4.74213 4.80424 4.82055 4.87949 4.92991 5.06571 5.14549 5.23376 5.37505 5.40966 5.58233 5.85951 6.30886 6.41578 6.47368 7.01419 7.29444 7.37984 8.11060 8.35662 9.35052 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007035 B = 0.004860 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3979.272141 B = 5760.292233 C = 9075.387357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.249 6.249 3 C -0.069 4.069 4 H 0.126 0.874 5 C -0.134 4.134 6 C 0.551 3.449 7 O -0.570 6.570 8 N -0.607 5.607 9 C 0.125 3.875 10 C -0.017 4.017 11 H 0.053 0.947 12 C -0.007 4.007 13 C -0.043 4.043 14 N -0.460 5.460 15 C 0.068 3.932 16 C 0.178 3.822 17 N -0.542 5.542 18 C 0.181 3.819 19 H 0.064 0.936 20 N -0.722 5.722 21 C -0.231 4.231 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.965 3.035 26 H -0.284 1.284 27 H -0.304 1.304 28 H -0.271 1.271 29 C 0.080 3.920 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.203 0.797 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.233 0.767 43 H 0.369 0.631 44 H 0.248 0.752 45 H 0.079 0.921 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -5.187 -19.806 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.024 6.024 3 C -0.200 4.200 4 H 0.144 0.856 5 C -0.193 4.193 6 C 0.339 3.661 7 O -0.450 6.450 8 N -0.339 5.339 9 C 0.002 3.998 10 C -0.038 4.038 11 H 0.072 0.928 12 C -0.136 4.136 13 C -0.176 4.176 14 N -0.142 5.142 15 C -0.073 4.073 16 C -0.105 4.105 17 N -0.260 5.260 18 C 0.070 3.930 19 H 0.082 0.918 20 N -0.360 5.360 21 C -0.363 4.363 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.618 5.618 25 Si 0.795 3.205 26 H -0.211 1.211 27 H -0.231 1.231 28 H -0.196 1.196 29 C -0.045 4.045 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.219 0.781 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.249 0.751 43 H 0.200 0.800 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.769 -6.145 -19.067 20.593 hybrid contribution -1.214 1.573 0.517 2.053 sum 3.556 -4.572 -18.550 19.433 Atomic orbital electron populations 1.23596 0.91475 1.07857 1.06129 1.87348 1.09587 1.07443 1.98038 1.23159 0.95321 0.97426 1.04085 0.85556 1.21897 1.02468 1.01080 0.93872 1.19625 0.89624 0.80940 0.75875 1.90679 1.61698 1.41027 1.51598 1.48777 1.08852 1.11869 1.64386 1.22355 0.81879 0.93339 1.02189 1.20400 0.93377 0.92604 0.97449 0.92806 1.20191 1.01627 0.98617 0.93178 1.22674 0.98861 0.99666 0.96445 1.45652 1.31529 1.25311 1.11693 1.22376 1.00702 1.05277 0.78936 1.25528 1.02987 1.00683 0.81323 1.70117 1.10748 1.13160 1.32022 1.21251 0.89746 0.94266 0.87758 0.91815 1.42598 1.45419 1.45338 1.02680 1.19566 1.11800 1.12427 0.92516 0.90226 1.25445 1.02871 1.02529 0.95346 1.69838 1.47446 1.47203 0.97312 0.85266 0.79460 0.79310 0.76466 1.21106 1.23138 1.19580 1.23532 0.97260 0.83171 1.00545 0.86209 0.89761 0.88921 0.91677 0.89419 0.92947 0.87633 0.91578 0.78068 0.89422 0.87500 0.88069 0.75051 0.79963 0.94344 0.90247 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 10.45 113.37 1.19 -1.02 16 2 S -0.25 -7.12 21.04 -56.49 -1.19 -8.31 16 3 C -0.07 -2.05 2.42 29.85 0.07 -1.98 16 4 H 0.13 3.15 7.60 -2.39 -0.02 3.13 16 5 C -0.13 -4.33 8.98 71.98 0.65 -3.68 16 6 C 0.55 19.68 7.09 87.66 0.62 20.30 16 7 O -0.57 -24.22 16.31 -3.03 -0.05 -24.27 16 8 N -0.61 -19.59 3.32 -807.88 -2.68 -22.27 16 9 C 0.13 3.79 6.53 86.54 0.56 4.36 16 10 C -0.02 -0.59 3.35 -10.63 -0.04 -0.63 16 11 H 0.05 2.35 7.67 -2.39 -0.02 2.33 16 12 C -0.01 -0.23 5.90 41.39 0.24 0.01 16 13 C -0.04 -0.95 10.56 83.09 0.88 -0.07 16 14 N -0.46 -8.38 3.15 -552.53 -1.74 -10.12 16 15 C 0.07 0.46 11.18 127.77 1.43 1.89 16 16 C 0.18 4.23 12.56 180.26 2.26 6.49 16 17 N -0.54 -18.95 11.25 -188.32 -2.12 -21.07 16 18 C 0.18 6.77 3.36 45.92 0.15 6.93 16 19 H 0.06 2.45 7.65 -2.39 -0.02 2.44 16 20 N -0.72 -35.30 5.11 -318.58 -1.63 -36.93 16 21 C -0.23 -12.24 9.96 84.03 0.84 -11.40 16 22 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 24 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 25 Si 0.97 45.28 29.55 68.60 2.03 47.30 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 C 0.08 2.43 6.44 86.55 0.56 2.99 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.47 7.14 -2.39 -0.02 1.45 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 2.50 6.96 -2.39 -0.02 2.48 16 34 H 0.09 2.34 6.92 -2.39 -0.02 2.33 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 2.41 6.03 -2.38 -0.01 2.40 16 37 H 0.07 2.22 7.88 -2.39 -0.02 2.20 16 38 H 0.20 3.06 6.92 -2.91 -0.02 3.04 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.23 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.37 20.46 7.56 -92.70 -0.70 19.76 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.08 2.63 5.95 -2.39 -0.01 2.61 16 46 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -80.28 387.86 3.08 -77.20 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.29 Total: 36.47 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 9.88 Total: 20.76 kcal Atomic # 7 Polarization: -141.27 SS G_CDS: -7.88 Total: -149.15 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: -7.12 SS G_CDS: -1.19 Total: -8.31 kcal Total: -80.28 3.08 -77.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070470621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.504 kcal (2) G-P(sol) polarization free energy of solvation -80.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds