Wall clock time and date at job start Tue Mar 31 2020 21:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81402 * 103.00014 * 2 1 4 4 H 1.08999 * 109.47114 * 304.99701 * 3 2 1 5 5 C 1.52990 * 109.46991 * 64.99941 * 3 2 1 6 6 C 1.50702 * 109.46836 * 185.00118 * 3 2 1 7 7 O 1.21274 * 120.00150 * 339.99792 * 6 3 2 8 8 N 1.34778 * 119.99519 * 160.00057 * 6 3 2 9 9 C 1.47422 * 125.64614 * 179.97438 * 8 6 3 10 10 C 1.54911 * 104.83472 * 204.16600 * 9 8 6 11 11 H 1.08996 * 111.00945 * 81.05936 * 10 9 8 12 12 C 1.50697 * 111.00821 * 204.91664 * 10 9 8 13 13 C 1.34677 * 126.58824 * 76.87542 * 12 10 9 14 14 N 1.34131 * 108.01540 * 179.87829 * 13 12 10 15 15 C 1.30501 * 109.25947 * 0.40172 * 14 13 12 16 16 N 1.35043 * 108.69664 * 359.75084 * 15 14 13 17 17 C 1.46500 * 126.39491 * 179.97438 * 16 15 14 18 18 C 1.55163 * 101.57645 * 322.98989 * 10 9 8 19 19 H 1.09004 * 110.87193 * 277.06235 * 18 10 9 20 20 N 1.46506 * 110.71659 * 153.86642 * 18 10 9 21 21 C 1.36938 * 119.99589 * 160.02483 * 20 18 10 22 22 H 1.07999 * 120.00325 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99817 * 180.02562 * 21 20 18 24 24 N 1.31611 * 120.00107 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99746 * 359.71693 * 23 21 20 26 26 H 1.48500 * 109.46781 * 90.00854 * 25 23 21 27 27 H 1.48496 * 109.47225 * 210.00413 * 25 23 21 28 28 H 1.48494 * 109.47296 * 330.00424 * 25 23 21 29 29 C 1.47019 * 125.65031 * 0.02562 * 8 6 3 30 30 H 1.09004 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47212 * 300.00046 * 1 2 3 32 32 H 1.09000 * 109.46964 * 60.00243 * 1 2 3 33 33 H 1.09000 * 109.47332 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47543 * 300.00118 * 5 3 2 35 35 H 1.09008 * 109.47487 * 60.00082 * 5 3 2 36 36 H 1.09002 * 110.36775 * 322.99917 * 9 8 6 37 37 H 1.09003 * 110.36681 * 85.21448 * 9 8 6 38 38 H 1.07997 * 125.98980 * 0.03016 * 13 12 10 39 39 H 1.07990 * 125.65045 * 179.73551 * 15 14 13 40 40 H 1.09001 * 109.47250 * 270.00458 * 17 16 15 41 41 H 1.08996 * 109.47055 * 30.00435 * 17 16 15 42 42 H 1.08997 * 109.47105 * 150.00708 * 17 16 15 43 43 H 0.96999 * 120.00080 * 340.01973 * 20 18 10 44 44 H 0.97000 * 120.00330 * 179.97438 * 24 23 21 45 45 H 1.09004 * 109.88546 * 59.48860 * 29 8 6 46 46 H 1.09001 * 109.88400 * 298.31993 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3073 6 6 3.7142 1.9385 -0.1239 7 8 4.4551 1.0199 0.1555 8 7 4.2252 3.1124 -0.5451 9 6 5.6584 3.4155 -0.7106 10 6 5.7543 4.9570 -0.5906 11 1 5.7548 5.2683 0.4539 12 6 6.9716 5.4801 -1.3085 13 6 7.1149 5.6336 -2.6388 14 7 8.3406 6.1269 -2.8698 15 6 8.9654 6.2769 -1.7339 16 7 8.1464 5.8848 -0.7344 17 6 8.4575 5.8909 0.6972 18 6 4.4518 5.4064 -1.3042 19 1 4.5917 5.4369 -2.3848 20 7 4.0103 6.7106 -0.8037 21 6 3.1509 7.4742 -1.5477 22 1 2.7990 7.1152 -2.5036 23 6 2.7329 8.7102 -1.0738 24 7 1.9073 9.4443 -1.7891 25 14 3.3365 9.3281 0.5825 26 1 4.5900 10.1020 0.3951 27 1 2.3018 10.2018 1.1919 28 1 3.5975 8.1720 1.4771 29 6 3.4458 4.3030 -0.9145 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.9884 3.4635 1.3075 34 1 0.6636 2.2778 1.3969 35 1 2.2354 1.9149 2.1492 36 1 6.2408 2.9368 0.0767 37 1 6.0048 3.0873 -1.6907 38 1 6.3721 5.4025 -3.3880 39 1 9.9708 6.6521 -1.6134 40 1 8.9008 4.9352 0.9768 41 1 9.1613 6.6948 0.9127 42 1 7.5417 6.0472 1.2673 43 1 4.3266 7.0331 0.0547 44 1 1.6149 10.3078 -1.4578 45 1 2.8457 4.6313 -0.0658 46 1 2.7995 4.0747 -1.7620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070624903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:57 Heat of formation + Delta-G solvation = 56.226291 kcal Electronic energy + Delta-G solvation = -27909.020252 eV Core-core repulsion = 24155.020154 eV Total energy + Delta-G solvation = -3754.000098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01273 -40.05238 -37.71815 -34.37016 -33.97205 -33.57496 -32.06457 -31.05569 -28.99799 -28.19975 -27.74292 -26.95629 -25.13070 -23.71544 -22.79784 -21.67000 -20.51749 -19.62524 -19.35089 -17.87127 -17.25190 -16.93885 -16.62291 -15.92424 -15.64717 -15.27929 -14.82574 -14.51216 -14.45357 -14.07163 -13.79840 -13.65783 -13.56790 -13.42360 -13.13851 -13.07832 -12.87031 -12.77215 -12.75700 -12.56580 -12.24565 -12.21869 -11.99295 -11.78569 -11.57182 -11.10055 -11.02129 -10.77883 -10.28958 -9.97882 -9.89897 -9.77634 -9.74261 -9.44756 -9.16813 -8.59611 -8.14318 -7.78271 -7.51936 -5.93341 -3.32249 1.33863 2.13213 2.37213 2.60871 2.80926 3.03461 3.20759 3.25363 3.32483 3.36538 4.31105 4.42579 4.56258 4.63197 4.70138 4.77429 4.79446 4.83485 4.89109 4.95508 4.97724 4.98834 5.15990 5.20224 5.33441 5.34897 5.40686 5.42849 5.51232 5.56602 5.58702 5.65868 5.77670 5.84588 5.87826 6.03276 6.13484 6.26050 6.42845 6.57762 6.91314 7.29684 7.48858 7.78103 8.10134 8.23508 8.24263 8.99195 9.71585 9.87991 11.24122 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008652 B = 0.004342 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.355670 B = 6446.454901 C = 8719.523117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.195 6.195 3 C -0.087 4.087 4 H 0.110 0.890 5 C -0.143 4.143 6 C 0.551 3.449 7 O -0.530 6.530 8 N -0.609 5.609 9 C 0.125 3.875 10 C -0.039 4.039 11 H 0.087 0.913 12 C -0.001 4.001 13 C -0.009 4.009 14 N -0.492 5.492 15 C 0.174 3.826 16 N -0.460 5.460 17 C 0.071 3.929 18 C 0.193 3.807 19 H 0.084 0.916 20 N -0.732 5.732 21 C -0.253 4.253 22 H 0.095 0.905 23 C 0.014 3.986 24 N -0.925 5.925 25 Si 0.880 3.120 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.069 3.931 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.169 0.831 39 H 0.201 0.799 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.363 0.637 44 H 0.262 0.738 45 H 0.078 0.922 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -13.003 6.823 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.031 5.969 3 C -0.219 4.219 4 H 0.128 0.872 5 C -0.202 4.202 6 C 0.337 3.663 7 O -0.407 6.407 8 N -0.344 5.344 9 C 0.002 3.998 10 C -0.060 4.060 11 H 0.105 0.895 12 C -0.115 4.115 13 C -0.157 4.157 14 N -0.210 5.210 15 C -0.108 4.108 16 N -0.144 5.144 17 C -0.072 4.072 18 C 0.080 3.920 19 H 0.102 0.898 20 N -0.373 5.373 21 C -0.382 4.382 22 H 0.112 0.888 23 C -0.182 4.182 24 N -0.572 5.572 25 Si 0.711 3.289 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.205 1.205 29 C -0.057 4.057 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.186 0.814 39 H 0.218 0.782 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.196 0.804 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.471 -14.106 6.175 16.703 hybrid contribution -0.923 1.715 2.042 2.822 sum 5.548 -12.391 8.218 15.870 Atomic orbital electron populations 1.23542 0.95608 1.06485 1.05112 1.87281 1.04980 1.06769 1.97913 1.23288 0.97088 0.97679 1.03810 0.87168 1.21999 1.01857 1.01741 0.94619 1.19266 0.88679 0.81386 0.76984 1.90717 1.60547 1.39529 1.49876 1.48366 1.08078 1.12523 1.65392 1.22157 0.81797 0.93515 1.02356 1.20998 0.91639 0.93805 0.99548 0.89494 1.20663 0.88425 1.08454 0.93980 1.22006 0.95263 1.04987 0.93434 1.70265 1.06729 1.18061 1.25903 1.24830 0.98429 1.05202 0.82301 1.45220 1.12554 1.48690 1.07887 1.22017 1.03225 1.03443 0.78506 1.21171 0.87814 0.85022 0.97962 0.89835 1.42654 1.56142 1.16457 1.22058 1.19027 1.19003 0.98187 1.02024 0.88761 1.24643 0.98988 0.96807 0.97810 1.69679 1.36490 1.12916 1.38090 0.86636 0.78472 0.78669 0.85158 1.21045 1.21557 1.20495 1.23401 0.96548 0.84837 1.00872 0.87927 0.90352 0.90399 0.90567 0.91231 0.90872 0.90626 0.90566 0.81384 0.78205 0.90584 0.89486 0.89750 0.80417 0.92823 0.90367 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 10.45 101.05 1.06 -0.11 16 2 S -0.20 -2.45 21.04 -107.50 -2.26 -4.71 16 3 C -0.09 -1.08 2.59 -27.89 -0.07 -1.15 16 4 H 0.11 1.26 7.52 -51.92 -0.39 0.87 16 5 C -0.14 -1.55 9.07 37.15 0.34 -1.21 16 6 C 0.55 8.25 7.02 -10.98 -0.08 8.18 16 7 O -0.53 -9.56 16.30 5.56 0.09 -9.47 16 8 N -0.61 -8.56 3.33 -170.52 -0.57 -9.13 16 9 C 0.13 1.67 6.36 -2.53 -0.02 1.66 16 10 C -0.04 -0.53 2.94 -89.62 -0.26 -0.80 16 11 H 0.09 1.18 6.97 -51.93 -0.36 0.81 16 12 C 0.00 -0.01 5.95 -81.60 -0.49 -0.50 16 13 C -0.01 -0.15 11.02 -17.81 -0.20 -0.34 16 14 N -0.49 -8.08 11.25 -14.67 -0.16 -8.24 16 15 C 0.17 2.28 12.56 -90.37 -1.14 1.14 16 16 N -0.46 -5.76 3.15 -121.37 -0.38 -6.15 16 17 C 0.07 0.59 11.00 59.85 0.66 1.25 16 18 C 0.19 3.14 2.97 -66.09 -0.20 2.95 16 19 H 0.08 1.42 6.59 -51.93 -0.34 1.08 16 20 N -0.73 -15.04 4.98 -51.64 -0.26 -15.30 16 21 C -0.25 -6.40 10.46 -15.06 -0.16 -6.56 16 22 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 23 C 0.01 0.39 5.50 -17.43 -0.10 0.30 16 24 N -0.93 -27.36 13.97 55.49 0.78 -26.59 16 25 Si 0.88 20.57 27.73 -169.99 -4.71 15.85 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -5.99 6.53 56.52 0.37 -5.62 16 29 C 0.07 1.01 5.95 -3.07 -0.02 0.99 16 30 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.08 0.58 7.14 -51.93 -0.37 0.21 16 32 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.08 0.85 6.59 -51.93 -0.34 0.51 16 34 H 0.07 0.63 6.92 -51.93 -0.36 0.27 16 35 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16 37 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 38 H 0.17 2.59 7.17 -52.49 -0.38 2.21 16 39 H 0.20 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.72 7.14 -51.93 -0.37 0.35 16 43 H 0.36 7.45 5.58 -40.82 -0.23 7.22 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.08 1.18 6.53 -51.93 -0.34 0.84 16 46 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -33.61 383.63 -9.22 -42.82 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.85 Total: 9.34 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.66 Total: 5.78 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.60 Total: -65.40 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.71 Total: 15.85 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.26 Total: -4.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.61 -9.22 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070624903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.050 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds