Wall clock time and date at job start Tue Mar 31 2020 21:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81397 * 103.00156 * 2 1 4 4 H 1.09002 * 109.47392 * 54.99826 * 3 2 1 5 5 C 1.53004 * 109.47112 * 295.00333 * 3 2 1 6 6 C 1.50701 * 109.47394 * 174.99850 * 3 2 1 7 7 O 1.21281 * 119.99695 * 25.00477 * 6 3 2 8 8 N 1.34773 * 120.00429 * 204.99805 * 6 3 2 9 9 C 1.47424 * 125.65160 * 179.97438 * 8 6 3 10 10 C 1.54907 * 104.83239 * 204.16604 * 9 8 6 11 11 H 1.09002 * 111.00095 * 81.06420 * 10 9 8 12 12 C 1.50697 * 111.00094 * 204.91521 * 10 9 8 13 13 C 1.39862 * 126.04225 * 51.89295 * 12 10 9 14 14 N 1.30835 * 108.20671 * 179.81502 * 13 12 10 15 15 N 1.40091 * 108.20198 * 0.43593 * 14 13 12 16 16 C 1.46502 * 126.03420 * 179.73653 * 15 14 13 17 17 C 1.34945 * 107.92553 * 359.72145 * 15 14 13 18 18 C 1.55150 * 101.58323 * 322.99091 * 10 9 8 19 19 H 1.08994 * 110.87176 * 277.06670 * 18 10 9 20 20 N 1.46504 * 110.71845 * 153.86249 * 18 10 9 21 21 C 1.36943 * 119.99781 * 160.02530 * 20 18 10 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47028 * 125.64573 * 0.02789 * 8 6 3 30 30 H 1.09004 * 109.46699 * 59.99777 * 1 2 3 31 31 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47043 * 300.00157 * 1 2 3 33 33 H 1.08993 * 109.47170 * 59.99717 * 5 3 2 34 34 H 1.09004 * 109.47142 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.46559 * 299.99437 * 5 3 2 36 36 H 1.09003 * 110.36388 * 323.00842 * 9 8 6 37 37 H 1.09000 * 110.36372 * 85.32871 * 9 8 6 38 38 H 1.07998 * 125.89861 * 359.97438 * 13 12 10 39 39 H 1.08997 * 109.47241 * 269.97856 * 16 15 14 40 40 H 1.08994 * 109.47180 * 29.98304 * 16 15 14 41 41 H 1.08999 * 109.46797 * 149.97842 * 16 15 14 42 42 H 1.07991 * 126.12574 * 180.02562 * 17 15 14 43 43 H 0.97000 * 120.00410 * 340.02855 * 20 18 10 44 44 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 45 45 H 1.09000 * 109.88075 * 59.48299 * 29 8 6 46 46 H 1.08996 * 109.88098 * 298.31959 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2542 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7143 1.9386 0.1239 7 8 4.4585 1.0531 -0.2409 8 7 4.2218 3.0755 0.6398 9 6 5.6545 3.3736 0.8182 10 6 5.7020 4.4277 1.9524 11 1 5.6248 3.9528 2.9305 12 6 6.9506 5.2662 1.8584 13 6 7.4028 5.9445 0.7220 14 7 8.5140 6.5626 1.0300 15 7 8.8099 6.2885 2.3716 16 6 9.9717 6.7809 3.1159 17 6 7.8355 5.4912 2.8572 18 6 4.4390 5.2743 1.6439 19 1 4.6498 6.0219 0.8793 20 7 3.9313 5.9105 2.8621 21 6 3.1040 6.9981 2.7727 22 1 2.8261 7.3870 1.8042 23 6 2.6276 7.6044 3.9270 24 7 2.9667 7.1307 5.1072 25 14 1.5053 9.0927 3.8052 26 1 0.2751 8.7252 3.0591 27 1 1.1382 9.5488 5.1699 28 1 2.2098 10.1868 3.0898 29 6 3.4381 4.2235 1.1192 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.6636 2.2778 -1.3969 34 1 1.9885 3.4636 -1.3075 35 1 2.2355 1.9149 -2.1491 36 1 6.1952 2.4743 1.1131 37 1 6.0734 3.7853 -0.1001 38 1 6.9171 5.9581 -0.2425 39 1 10.7951 6.0741 3.0134 40 1 10.2733 7.7502 2.7190 41 1 9.7110 6.8848 4.1691 42 1 7.7730 5.1026 3.8629 43 1 4.1812 5.5614 3.7319 44 1 2.6335 7.5542 5.9137 45 1 2.7744 3.9088 1.9245 46 1 2.8559 4.6432 0.2989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086967880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:01 Heat of formation + Delta-G solvation = 66.404807 kcal Electronic energy + Delta-G solvation = -27451.920019 eV Core-core repulsion = 23698.361295 eV Total energy + Delta-G solvation = -3753.558724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05788 -39.80515 -37.47365 -34.13132 -33.61633 -33.07313 -31.66700 -30.69861 -29.00793 -28.64395 -27.48712 -26.30892 -24.87034 -23.80308 -22.50715 -21.18794 -20.52712 -19.49196 -19.19787 -17.39305 -17.09950 -16.54229 -16.48503 -15.64682 -15.24988 -15.00372 -14.75178 -14.34483 -14.27433 -14.20455 -13.65303 -13.47209 -13.28235 -13.24877 -13.15335 -12.81132 -12.72566 -12.57441 -12.44853 -12.39640 -11.96415 -11.90394 -11.70604 -11.67247 -11.21164 -10.89384 -10.87351 -10.61193 -10.22148 -10.15295 -9.91866 -9.84153 -9.69106 -9.18599 -9.06264 -8.39704 -8.04797 -7.70150 -7.11441 -5.88618 -3.18713 1.42291 2.12509 2.45103 2.71008 2.78403 3.02672 3.21650 3.36265 3.41875 3.42147 4.44216 4.53953 4.63370 4.78163 4.97825 5.00388 5.03616 5.03837 5.10401 5.13451 5.17727 5.23388 5.38123 5.41438 5.42861 5.50764 5.54107 5.62045 5.63299 5.73325 5.80586 5.89773 5.91881 5.99262 6.12725 6.27575 6.33523 6.46394 6.51541 6.82726 6.88484 7.20915 7.59029 7.70292 7.91156 8.26444 8.29555 9.41168 9.94743 10.29688 11.33244 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007658 B = 0.004149 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.203908 B = 6747.329039 C = 9719.005349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.197 6.197 3 C -0.087 4.087 4 H 0.109 0.891 5 C -0.140 4.140 6 C 0.549 3.451 7 O -0.534 6.534 8 N -0.607 5.607 9 C 0.121 3.879 10 C -0.030 4.030 11 H 0.089 0.911 12 C -0.205 4.205 13 C 0.058 3.942 14 N -0.304 5.304 15 N -0.381 5.381 16 C 0.105 3.895 17 C 0.065 3.935 18 C 0.184 3.816 19 H 0.068 0.932 20 N -0.708 5.708 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.006 4.006 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.068 3.932 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.178 0.822 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.172 0.828 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.075 0.925 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 -7.676 -7.191 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.028 5.972 3 C -0.219 4.219 4 H 0.127 0.873 5 C -0.199 4.199 6 C 0.335 3.665 7 O -0.411 6.411 8 N -0.341 5.341 9 C -0.002 4.002 10 C -0.051 4.051 11 H 0.107 0.893 12 C -0.217 4.217 13 C -0.129 4.129 14 N -0.125 5.125 15 N -0.163 5.163 16 C -0.036 4.036 17 C -0.080 4.080 18 C 0.072 3.928 19 H 0.086 0.914 20 N -0.347 5.347 21 C -0.376 4.376 22 H 0.089 0.911 23 C -0.203 4.203 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.058 4.058 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.195 0.805 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.189 0.811 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.842 -8.091 -7.737 12.627 hybrid contribution -2.283 1.448 0.799 2.819 sum 3.559 -6.642 -6.938 10.243 Atomic orbital electron populations 1.23531 0.95673 1.06430 1.05045 1.87258 1.04947 1.07054 1.97899 1.23291 0.97468 0.97452 1.03673 0.87255 1.21959 1.01663 1.01478 0.94807 1.19225 0.88529 0.81165 0.77607 1.90709 1.60342 1.40664 1.49365 1.48415 1.08465 1.16183 1.61031 1.22220 0.81261 0.98429 0.98245 1.20839 0.91950 0.93783 0.98536 0.89290 1.19581 0.99669 1.08656 0.93762 1.23637 0.93590 0.96081 0.99543 1.77276 1.18311 1.23985 0.92911 1.48318 1.20061 1.39093 1.08843 1.21774 0.85536 1.00749 0.95586 1.22271 0.89928 0.96001 0.99838 1.21220 0.88804 0.91552 0.91265 0.91424 1.42294 1.56626 1.33747 1.02074 1.19172 1.21001 1.04825 0.92645 0.91103 1.24719 1.00858 0.99479 0.95241 1.69636 1.48744 1.42644 0.96665 0.86311 0.80643 0.82894 0.76574 1.21177 1.21686 1.21212 1.23462 0.96806 0.86646 0.98837 0.90432 0.87978 0.90404 0.91413 0.90871 0.90801 0.90665 0.91327 0.80491 0.91174 0.89611 0.89585 0.81118 0.77903 0.93357 0.90685 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 10.45 101.05 1.06 -0.19 16 2 S -0.20 -2.64 21.10 -107.50 -2.27 -4.90 16 3 C -0.09 -1.16 2.68 -27.88 -0.07 -1.23 16 4 H 0.11 1.40 7.25 -51.92 -0.38 1.03 16 5 C -0.14 -1.53 9.08 37.16 0.34 -1.20 16 6 C 0.55 8.80 6.97 -10.99 -0.08 8.72 16 7 O -0.53 -10.18 16.39 5.56 0.09 -10.08 16 8 N -0.61 -9.23 3.33 -170.52 -0.57 -9.80 16 9 C 0.12 1.76 6.35 -2.53 -0.02 1.74 16 10 C -0.03 -0.45 3.06 -89.63 -0.27 -0.73 16 11 H 0.09 1.39 8.00 -51.93 -0.42 0.97 16 12 C -0.20 -3.09 5.02 -105.06 -0.53 -3.62 16 13 C 0.06 0.87 10.85 -17.37 -0.19 0.68 16 14 N -0.30 -4.84 12.58 30.62 0.39 -4.45 16 15 N -0.38 -5.33 4.01 -68.17 -0.27 -5.60 16 16 C 0.11 0.98 11.47 59.85 0.69 1.67 16 17 C 0.07 0.93 11.40 -17.22 -0.20 0.73 16 18 C 0.18 3.22 3.04 -66.10 -0.20 3.02 16 19 H 0.07 1.22 7.68 -51.93 -0.40 0.82 16 20 N -0.71 -15.77 5.18 -51.65 -0.27 -16.04 16 21 C -0.25 -6.21 9.98 -15.06 -0.15 -6.36 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 24 N -0.93 -26.26 13.06 55.49 0.72 -25.54 16 25 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.07 1.08 5.98 -3.06 -0.02 1.06 16 30 H 0.08 0.61 7.14 -51.92 -0.37 0.24 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.07 0.61 6.92 -51.93 -0.36 0.25 16 34 H 0.07 0.78 7.29 -51.93 -0.38 0.40 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 37 H 0.07 0.93 7.35 -51.93 -0.38 0.55 16 38 H 0.18 2.27 7.94 -52.49 -0.42 1.85 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 43 H 0.39 9.27 7.71 -40.82 -0.31 8.96 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 46 H 0.06 0.90 7.29 -51.93 -0.38 0.52 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -32.53 391.69 -8.15 -40.68 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.11 Total: 9.62 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 0.26 Total: 4.02 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.00 Total: -61.43 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -2.27 Total: -4.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.53 -8.15 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086967880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.084 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds