Wall clock time and date at job start Tue Mar 31 2020 21:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47303 * 2 1 4 4 C 1.38408 * 119.99748 * 89.99293 * 3 2 1 5 5 N 1.32515 * 119.21285 * 180.02562 * 4 3 2 6 6 C 1.32262 * 120.73673 * 180.02562 * 5 4 3 7 7 C 1.38631 * 119.19784 * 359.72914 * 6 5 4 8 8 C 1.38579 * 118.55425 * 0.51631 * 7 6 5 9 9 C 1.50706 * 120.39849 * 179.75955 * 8 7 6 10 10 N 1.32293 * 119.20159 * 359.47856 * 8 7 6 11 11 C 1.46499 * 119.99832 * 269.99790 * 3 2 1 12 12 H 1.09001 * 109.47002 * 179.97438 * 11 3 2 13 13 C 1.53001 * 109.47194 * 60.00081 * 11 3 2 14 14 C 1.52993 * 109.47376 * 299.99794 * 11 3 2 15 15 N 1.46502 * 109.46878 * 304.99865 * 14 11 3 16 16 C 1.34783 * 120.00008 * 179.97438 * 15 14 11 17 17 O 1.21277 * 119.99637 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00078 * 180.02562 * 16 15 14 19 19 S 1.80996 * 109.46861 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00082 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99385 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00583 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99741 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00397 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47265 * 59.99730 * 24 22 20 26 26 H 1.48496 * 109.47202 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46844 * 299.99709 * 24 22 20 28 28 H 1.09001 * 109.46882 * 60.00711 * 1 2 3 29 29 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47570 * 300.00107 * 1 2 3 31 31 H 1.08998 * 109.47275 * 239.99646 * 2 1 3 32 32 H 1.09004 * 109.47183 * 119.99987 * 2 1 3 33 33 H 1.08007 * 120.39918 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.72000 * 180.27384 * 7 6 5 35 35 H 1.09001 * 109.46953 * 269.71872 * 9 8 7 36 36 H 1.09000 * 109.47318 * 29.71470 * 9 8 7 37 37 H 1.09000 * 109.47161 * 149.72101 * 9 8 7 38 38 H 1.09001 * 109.47324 * 179.97438 * 13 11 3 39 39 H 1.09001 * 109.46926 * 299.99787 * 13 11 3 40 40 H 1.09000 * 109.47126 * 59.99825 * 13 11 3 41 41 H 1.08996 * 109.46944 * 64.99767 * 14 11 3 42 42 H 1.08993 * 109.47475 * 185.00171 * 14 11 3 43 43 H 0.96999 * 120.00353 * 0.02562 * 15 14 11 44 44 H 1.08993 * 109.47252 * 300.00173 * 18 16 15 45 45 H 1.09004 * 109.46813 * 60.00348 * 18 16 15 46 46 H 0.96996 * 119.99854 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2489 2.0336 1.1987 5 7 2.6901 3.2830 1.1805 6 6 2.9210 3.9349 2.3080 7 6 2.6904 3.2972 3.5172 8 6 2.2341 1.9888 3.4996 9 6 1.9749 1.2542 4.7898 10 7 2.0233 1.3943 2.3368 11 6 2.2626 2.0717 -1.2687 12 1 2.6194 3.0822 -1.0696 13 6 0.9616 2.1397 -2.0711 14 6 3.3171 1.3069 -2.0710 15 7 4.5229 1.1382 -1.2562 16 6 5.5912 0.4887 -1.7599 17 8 5.5539 0.0436 -2.8874 18 6 6.8313 0.3146 -0.9216 19 16 8.0784 -0.5914 -1.8702 20 6 9.3815 -0.6494 -0.6856 21 1 9.2482 -0.1975 0.2863 22 6 10.5791 -1.2758 -1.0012 23 7 10.7418 -1.8261 -2.1859 24 14 11.9603 -1.3379 0.2550 25 1 11.4921 -2.0509 1.4706 26 1 13.1234 -2.0576 -0.3233 27 1 12.3631 0.0449 0.6164 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2802 4.9532 2.2868 34 1 2.8664 3.8077 4.4524 35 1 2.8814 0.7346 5.1004 36 1 1.6822 1.9666 5.5611 37 1 1.1739 0.5301 4.6410 38 1 1.1432 2.6539 -3.0149 39 1 0.6044 1.1293 -2.2702 40 1 0.2103 2.6846 -1.4995 41 1 2.9247 0.3280 -2.3463 42 1 3.5637 1.8664 -2.9732 43 1 4.5523 1.4932 -0.3540 44 1 7.2240 1.2933 -0.6461 45 1 6.5844 -0.2449 -0.0193 46 1 11.5786 -2.2642 -2.4064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089575766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:06 Heat of formation + Delta-G solvation = 19.942053 kcal Electronic energy + Delta-G solvation = -27031.583625 eV Core-core repulsion = 23276.010125 eV Total energy + Delta-G solvation = -3755.573500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25170 -39.37029 -38.03992 -34.53124 -34.48931 -32.67229 -32.41050 -31.89970 -29.83139 -29.33855 -28.45977 -25.95721 -25.35187 -24.36317 -23.17520 -22.66997 -20.31996 -20.15757 -18.02639 -17.85290 -17.62545 -16.29372 -16.03611 -15.90885 -15.68021 -15.30633 -14.87290 -14.78936 -14.50086 -14.05096 -13.91888 -13.77923 -13.50727 -13.29511 -13.11103 -12.90790 -12.88285 -12.80598 -12.60492 -12.59047 -12.38087 -11.84587 -11.67637 -11.21655 -11.04979 -11.02757 -11.02550 -10.93874 -10.76162 -10.73450 -10.29346 -9.80632 -9.37327 -9.23031 -9.04653 -8.82847 -8.22135 -8.11009 -6.47790 -6.19844 -3.90209 0.97172 1.03627 2.37288 3.07165 3.14239 3.24592 3.28536 3.33184 3.69300 3.75952 3.89344 4.22274 4.23474 4.40386 4.55501 4.77987 4.87292 4.94970 5.00208 5.05824 5.13751 5.15065 5.17548 5.18674 5.23769 5.25318 5.36061 5.43544 5.48013 5.55512 5.62258 5.66283 5.69180 5.76478 5.81803 5.87983 5.92078 6.06452 6.16868 6.18817 6.59794 6.72065 6.75740 7.25634 7.60906 7.75063 8.12316 8.36821 8.65230 9.25251 10.87586 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.002917 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.649260 B = 9597.978544 C =11107.862984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 N -0.574 5.574 4 C 0.568 3.432 5 N -0.575 5.575 6 C 0.195 3.805 7 C -0.297 4.297 8 C 0.218 3.782 9 C -0.107 4.107 10 N -0.566 5.566 11 C 0.139 3.861 12 H 0.114 0.886 13 C -0.160 4.160 14 C 0.111 3.889 15 N -0.732 5.732 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.152 4.152 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.396 0.604 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.610 10.779 11.120 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.290 5.290 4 C 0.213 3.787 5 N -0.298 5.298 6 C 0.028 3.972 7 C -0.322 4.322 8 C 0.070 3.930 9 C -0.164 4.164 10 N -0.290 5.290 11 C 0.034 3.966 12 H 0.132 0.868 13 C -0.218 4.218 14 C -0.015 4.015 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.303 4.303 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.183 0.817 34 H 0.158 0.842 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.230 0.770 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.756 9.347 8.040 26.765 hybrid contribution 1.113 1.148 3.392 3.750 sum -22.643 10.495 11.432 27.451 Atomic orbital electron populations 1.22306 0.96101 1.02091 1.02320 1.21410 0.94012 0.80806 1.03613 1.46289 1.68220 1.13419 1.01047 1.19263 0.87623 0.85544 0.86233 1.67887 1.21270 1.08659 1.32000 1.22906 0.88710 0.98884 0.86738 1.22339 1.11429 0.97786 1.00687 1.21415 0.87592 0.90819 0.93191 1.20785 1.03544 1.00516 0.91569 1.67738 1.25036 1.38767 0.97427 1.21419 0.95023 0.97905 0.82205 0.86778 1.22208 0.96578 1.02862 1.00190 1.21686 0.84743 1.00811 0.94212 1.45891 1.14398 1.60014 1.18348 1.20275 0.83683 0.76861 0.87367 1.90693 1.82120 1.47526 1.19000 1.23513 0.98048 1.05478 1.03236 1.85348 1.07001 1.70365 1.20392 1.22834 1.00789 1.42866 1.01954 0.91069 1.24982 0.97959 0.94581 0.95995 1.70011 1.26039 1.34420 1.19860 0.86229 0.80277 0.78426 0.80607 1.19953 1.20777 1.19934 0.92116 0.91756 0.92575 0.90304 0.89434 0.81741 0.84192 0.89596 0.90223 0.90160 0.90892 0.91547 0.91892 0.91359 0.90331 0.77009 0.89439 0.89566 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.96 37.16 0.37 -1.02 16 2 C 0.12 1.22 5.55 -4.04 -0.02 1.20 16 3 N -0.57 -6.02 1.97 -168.44 -0.33 -6.35 16 4 C 0.57 6.66 7.93 -322.80 -2.56 4.10 16 5 N -0.58 -6.44 8.85 -13.92 -0.12 -6.57 16 6 C 0.19 1.74 11.30 -17.22 -0.19 1.55 16 7 C -0.30 -2.44 9.84 -39.31 -0.39 -2.83 16 8 C 0.22 2.07 6.82 -82.26 -0.56 1.51 16 9 C -0.11 -0.68 10.22 36.01 0.37 -0.31 16 10 N -0.57 -6.54 9.05 -10.15 -0.09 -6.63 16 11 C 0.14 1.35 2.82 -67.93 -0.19 1.16 16 12 H 0.11 1.20 6.76 -51.93 -0.35 0.85 16 13 C -0.16 -1.21 8.14 37.16 0.30 -0.90 16 14 C 0.11 1.35 4.92 -4.04 -0.02 1.33 16 15 N -0.73 -10.93 5.39 -60.30 -0.32 -11.25 16 16 C 0.53 10.50 7.85 -10.98 -0.09 10.42 16 17 O -0.52 -12.08 15.86 5.56 0.09 -11.99 16 18 C -0.15 -3.26 6.16 36.01 0.22 -3.04 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.63 9.50 30.94 0.29 -15.34 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 23 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 24 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.06 0.46 5.44 -51.93 -0.28 0.18 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.78 6.53 -51.93 -0.34 0.44 16 32 H 0.09 0.97 7.33 -51.93 -0.38 0.58 16 33 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.48 6.17 -51.93 -0.32 0.16 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.86 6.88 -51.93 -0.36 0.50 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.40 5.60 7.91 -40.82 -0.32 5.28 16 44 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 45 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -35.64 392.90 -10.89 -46.53 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.97 Total: 3.36 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.56 Total: -0.12 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.14 Total: -56.57 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.64 -10.89 -46.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089575766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.473 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds