Wall clock time and date at job start Tue Mar 31 2020 21:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47303 * 2 1 4 4 C 1.38408 * 119.99748 * 89.99293 * 3 2 1 5 5 N 1.32515 * 119.21285 * 180.02562 * 4 3 2 6 6 C 1.32262 * 120.73673 * 180.02562 * 5 4 3 7 7 C 1.38631 * 119.19784 * 359.72914 * 6 5 4 8 8 C 1.38579 * 118.55425 * 0.51631 * 7 6 5 9 9 C 1.50706 * 120.39849 * 179.75955 * 8 7 6 10 10 N 1.32293 * 119.20159 * 359.47856 * 8 7 6 11 11 C 1.46499 * 119.99832 * 269.99790 * 3 2 1 12 12 H 1.09001 * 109.47002 * 179.97438 * 11 3 2 13 13 C 1.53001 * 109.47194 * 60.00081 * 11 3 2 14 14 C 1.52993 * 109.47376 * 299.99794 * 11 3 2 15 15 N 1.46502 * 109.46878 * 304.99865 * 14 11 3 16 16 C 1.34783 * 120.00008 * 179.97438 * 15 14 11 17 17 O 1.21277 * 119.99637 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00078 * 180.02562 * 16 15 14 19 19 S 1.80996 * 109.46861 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00082 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99385 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00583 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99741 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00397 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47265 * 59.99730 * 24 22 20 26 26 H 1.48496 * 109.47202 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46844 * 299.99709 * 24 22 20 28 28 H 1.09001 * 109.46882 * 60.00711 * 1 2 3 29 29 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47570 * 300.00107 * 1 2 3 31 31 H 1.08998 * 109.47275 * 239.99646 * 2 1 3 32 32 H 1.09004 * 109.47183 * 119.99987 * 2 1 3 33 33 H 1.08007 * 120.39918 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.72000 * 180.27384 * 7 6 5 35 35 H 1.09001 * 109.46953 * 269.71872 * 9 8 7 36 36 H 1.09000 * 109.47318 * 29.71470 * 9 8 7 37 37 H 1.09000 * 109.47161 * 149.72101 * 9 8 7 38 38 H 1.09001 * 109.47324 * 179.97438 * 13 11 3 39 39 H 1.09001 * 109.46926 * 299.99787 * 13 11 3 40 40 H 1.09000 * 109.47126 * 59.99825 * 13 11 3 41 41 H 1.08996 * 109.46944 * 64.99767 * 14 11 3 42 42 H 1.08993 * 109.47475 * 185.00171 * 14 11 3 43 43 H 0.96999 * 120.00353 * 0.02562 * 15 14 11 44 44 H 1.08993 * 109.47252 * 300.00173 * 18 16 15 45 45 H 1.09004 * 109.46813 * 60.00348 * 18 16 15 46 46 H 0.96996 * 119.99854 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2489 2.0336 1.1987 5 7 2.6901 3.2830 1.1805 6 6 2.9210 3.9349 2.3080 7 6 2.6904 3.2972 3.5172 8 6 2.2341 1.9888 3.4996 9 6 1.9749 1.2542 4.7898 10 7 2.0233 1.3943 2.3368 11 6 2.2626 2.0717 -1.2687 12 1 2.6194 3.0822 -1.0696 13 6 0.9616 2.1397 -2.0711 14 6 3.3171 1.3069 -2.0710 15 7 4.5229 1.1382 -1.2562 16 6 5.5912 0.4887 -1.7599 17 8 5.5539 0.0436 -2.8874 18 6 6.8313 0.3146 -0.9216 19 16 8.0784 -0.5914 -1.8702 20 6 9.3815 -0.6494 -0.6856 21 1 9.2482 -0.1975 0.2863 22 6 10.5791 -1.2758 -1.0012 23 7 10.7418 -1.8261 -2.1859 24 14 11.9603 -1.3379 0.2550 25 1 11.4921 -2.0509 1.4706 26 1 13.1234 -2.0576 -0.3233 27 1 12.3631 0.0449 0.6164 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2802 4.9532 2.2868 34 1 2.8664 3.8077 4.4524 35 1 2.8814 0.7346 5.1004 36 1 1.6822 1.9666 5.5611 37 1 1.1739 0.5301 4.6410 38 1 1.1432 2.6539 -3.0149 39 1 0.6044 1.1293 -2.2702 40 1 0.2103 2.6846 -1.4995 41 1 2.9247 0.3280 -2.3463 42 1 3.5637 1.8664 -2.9732 43 1 4.5523 1.4932 -0.3540 44 1 7.2240 1.2933 -0.6461 45 1 6.5844 -0.2449 -0.0193 46 1 11.5786 -2.2642 -2.4064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089575766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:06 Heat of formation + Delta-G solvation = -1.256287 kcal Electronic energy + Delta-G solvation = -27032.502854 eV Core-core repulsion = 23276.010125 eV Total energy + Delta-G solvation = -3756.492729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.98722 -40.74281 -39.03983 -35.68618 -35.21435 -34.61416 -33.58768 -32.72115 -31.01178 -30.40468 -29.07750 -27.77023 -26.83241 -25.07644 -23.92991 -23.37670 -21.77819 -21.06955 -19.82925 -18.77548 -18.44414 -17.85411 -17.35904 -16.90487 -16.81256 -16.40763 -16.33996 -15.96816 -15.84764 -15.18355 -14.99992 -14.69185 -14.51105 -14.49453 -14.09388 -14.01411 -13.82985 -13.67523 -13.43647 -13.36818 -13.20577 -13.14343 -13.07410 -12.88898 -12.67121 -12.48437 -11.98310 -11.79669 -11.76804 -11.65801 -11.48001 -11.15711 -11.06707 -10.94625 -10.34204 -10.18609 -9.96357 -8.85688 -8.70530 -8.37216 -6.16164 0.27050 0.33795 1.22415 1.42012 1.43074 1.52967 1.54032 1.63301 2.22834 2.25649 2.96602 2.96744 3.23361 3.27490 3.52895 3.66817 3.81228 3.89106 4.01563 4.12731 4.17573 4.22902 4.36447 4.40022 4.42681 4.46899 4.52495 4.58303 4.61671 4.70649 4.76976 4.79253 4.90784 4.91266 5.00230 5.05745 5.15292 5.18849 5.35431 5.37982 5.39099 5.54909 5.92813 6.02663 6.16491 6.34902 6.51894 7.03512 7.13305 7.38253 8.71894 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.002917 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.649260 B = 9597.978544 C =11107.862984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 N -0.577 5.577 4 C 0.550 3.450 5 N -0.593 5.593 6 C 0.183 3.817 7 C -0.290 4.290 8 C 0.197 3.803 9 C -0.102 4.102 10 N -0.588 5.588 11 C 0.150 3.850 12 H 0.110 0.890 13 C -0.152 4.152 14 C 0.109 3.891 15 N -0.709 5.709 16 C 0.535 3.465 17 O -0.559 6.559 18 C -0.129 4.129 19 S -0.139 6.139 20 C -0.552 4.552 21 H 0.079 0.921 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.999 3.001 25 H -0.263 1.263 26 H -0.276 1.276 27 H -0.262 1.262 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.194 0.806 34 H 0.170 0.830 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.403 0.597 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.186 12.183 13.341 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.004 3.996 3 N -0.294 5.294 4 C 0.195 3.805 5 N -0.316 5.316 6 C 0.016 3.984 7 C -0.315 4.315 8 C 0.050 3.950 9 C -0.160 4.160 10 N -0.312 5.312 11 C 0.045 3.955 12 H 0.128 0.872 13 C -0.211 4.211 14 C -0.015 4.015 15 N -0.362 5.362 16 C 0.321 3.679 17 O -0.437 6.437 18 C -0.281 4.281 19 S 0.088 5.912 20 C -0.700 4.700 21 H 0.097 0.903 22 C -0.189 4.189 23 N -0.546 5.546 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.201 1.201 27 H -0.186 1.186 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.210 0.790 34 H 0.187 0.813 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.238 0.762 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.376 10.786 10.306 28.579 hybrid contribution 1.186 0.788 2.771 3.115 sum -23.190 11.574 13.077 29.030 Atomic orbital electron populations 1.22198 0.94751 1.02682 1.02035 1.21370 0.95062 0.80572 1.02633 1.46329 1.68508 1.13529 1.01025 1.19480 0.88407 0.86072 0.86590 1.67916 1.21890 1.08602 1.33193 1.23494 0.88302 1.00030 0.86529 1.22681 1.09863 0.97253 1.01726 1.22020 0.87557 0.91827 0.93553 1.20845 1.03477 1.00831 0.90807 1.67765 1.25847 1.39507 0.98075 1.21330 0.95231 0.96905 0.81993 0.87221 1.22157 0.95172 1.03411 1.00344 1.21908 0.83973 1.01267 0.94361 1.45692 1.13915 1.57899 1.18650 1.19966 0.84169 0.77213 0.86571 1.90682 1.82829 1.49664 1.20533 1.23340 0.96933 1.05158 1.02635 1.85474 1.09960 1.72311 1.23444 1.23165 1.01301 1.43344 1.02163 0.90281 1.26123 1.00855 0.93678 0.98265 1.70169 1.26997 1.35242 1.22184 0.85007 0.76316 0.79061 0.77635 1.18722 1.20070 1.18637 0.91261 0.90742 0.93821 0.90571 0.90999 0.78966 0.81270 0.89323 0.87771 0.90674 0.89607 0.91067 0.91662 0.91476 0.90134 0.76196 0.87925 0.88324 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.96 71.98 0.72 -1.74 16 2 C 0.13 2.44 5.55 86.38 0.48 2.92 16 3 N -0.58 -11.73 1.97 -686.82 -1.35 -13.08 16 4 C 0.55 12.50 7.93 261.49 2.07 14.58 16 5 N -0.59 -12.56 8.85 -197.97 -1.75 -14.31 16 6 C 0.18 2.90 11.30 84.72 0.96 3.86 16 7 C -0.29 -4.11 9.84 22.45 0.22 -3.89 16 8 C 0.20 3.49 6.82 42.57 0.29 3.78 16 9 C -0.10 -1.14 10.22 71.24 0.73 -0.41 16 10 N -0.59 -13.26 9.05 -186.04 -1.68 -14.94 16 11 C 0.15 2.76 2.82 44.99 0.13 2.88 16 12 H 0.11 2.18 6.76 -2.39 -0.02 2.16 16 13 C -0.15 -2.05 8.14 71.98 0.59 -1.46 16 14 C 0.11 2.58 4.92 86.38 0.42 3.01 16 15 N -0.71 -20.73 5.39 -463.08 -2.50 -23.23 16 16 C 0.54 21.16 7.85 87.66 0.69 21.85 16 17 O -0.56 -26.53 15.86 -3.02 -0.05 -26.58 16 18 C -0.13 -5.55 6.16 71.24 0.44 -5.11 16 19 S -0.14 -7.95 20.57 -56.49 -1.16 -9.11 16 20 C -0.55 -32.38 9.50 67.95 0.65 -31.74 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.02 0.91 5.49 84.85 0.47 1.38 16 23 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 24 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 28 H 0.07 0.95 5.44 -2.39 -0.01 0.94 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.48 6.53 -2.39 -0.02 1.47 16 32 H 0.07 1.61 7.33 -2.38 -0.02 1.59 16 33 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.61 8.09 -2.39 -0.02 0.60 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.90 6.17 -2.39 -0.01 0.89 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.65 6.88 -2.39 -0.02 1.63 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.40 11.01 7.91 -92.71 -0.73 10.28 16 44 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 45 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 46 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -78.94 392.90 2.92 -76.02 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.26 Total: 25.32 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 8.84 Total: 9.90 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -6.99 Total: -121.74 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -78.94 2.92 -76.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089575766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.764 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds