Wall clock time and date at job start Tue Mar 31 2020 21:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47280 * 2 1 4 4 C 1.39051 * 119.99720 * 270.00857 * 3 2 1 5 5 C 1.39482 * 120.15036 * 190.91003 * 4 3 2 6 6 C 1.38572 * 117.90073 * 179.71036 * 5 4 3 7 7 C 1.38818 * 118.03319 * 0.56765 * 6 5 4 8 8 C 1.50705 * 119.98660 * 179.70569 * 7 6 5 9 9 N 1.31784 * 120.01985 * 359.68370 * 7 6 5 10 10 N 1.28350 * 122.28728 * 0.02562 * 9 7 6 11 11 C 1.46499 * 120.00049 * 89.99941 * 3 2 1 12 12 H 1.08994 * 109.46862 * 175.70746 * 11 3 2 13 13 C 1.52994 * 109.47193 * 55.70377 * 11 3 2 14 14 C 1.53008 * 109.46877 * 295.70518 * 11 3 2 15 15 N 1.46490 * 109.47308 * 305.00124 * 14 11 3 16 16 C 1.34777 * 120.00071 * 180.02562 * 15 14 11 17 17 O 1.21285 * 120.00023 * 359.72094 * 16 15 14 18 18 C 1.50700 * 120.00131 * 179.97438 * 16 15 14 19 19 S 1.81005 * 109.47149 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00042 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99821 * 0.02562 * 20 19 18 22 22 C 1.38793 * 119.99890 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00294 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47175 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46904 * 120.00317 * 24 22 20 27 27 H 1.48503 * 109.47245 * 240.00216 * 24 22 20 28 28 H 1.08996 * 109.47196 * 60.00381 * 1 2 3 29 29 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47090 * 299.99889 * 1 2 3 31 31 H 1.09010 * 109.46986 * 240.00235 * 2 1 3 32 32 H 1.08998 * 109.47499 * 120.00334 * 2 1 3 33 33 H 1.07995 * 121.05010 * 359.97438 * 5 4 3 34 34 H 1.07993 * 120.98216 * 180.27164 * 6 5 4 35 35 H 1.08999 * 109.47200 * 269.97488 * 8 7 6 36 36 H 1.08995 * 109.46923 * 29.98066 * 8 7 6 37 37 H 1.09006 * 109.46677 * 149.97601 * 8 7 6 38 38 H 1.09009 * 109.47026 * 59.99913 * 13 11 3 39 39 H 1.08991 * 109.47663 * 179.97438 * 13 11 3 40 40 H 1.09002 * 109.47392 * 300.00229 * 13 11 3 41 41 H 1.09004 * 109.46737 * 184.99650 * 14 11 3 42 42 H 1.09002 * 109.46625 * 65.00045 * 14 11 3 43 43 H 0.96998 * 120.00451 * 359.97438 * 15 14 11 44 44 H 1.08996 * 109.47347 * 300.00249 * 18 16 15 45 45 H 1.09004 * 109.47249 * 60.00017 * 18 16 15 46 46 H 0.96999 * 120.00330 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2500 2.0367 -1.2042 5 6 2.9239 3.2578 -1.2189 6 6 3.1348 3.8674 -2.4454 7 6 2.6523 3.2319 -3.5813 8 6 2.8513 3.8590 -4.9372 9 7 2.0208 2.0801 -3.4745 10 7 1.8269 1.5070 -2.3426 11 6 2.2626 2.0718 1.2687 12 1 2.6915 3.0541 1.0709 13 6 3.2364 1.2514 2.1168 14 6 0.9414 2.2346 2.0232 15 7 -0.0304 2.9162 1.1647 16 6 -1.2725 3.1699 1.6223 17 8 -1.5872 2.8295 2.7431 18 6 -2.2721 3.8716 0.7394 19 16 -3.8349 4.0640 1.6320 20 6 -4.7905 4.8876 0.4017 21 1 -4.3528 5.1157 -0.5589 22 6 -6.1055 5.2431 0.6673 23 7 -6.6388 4.9656 1.8382 24 14 -7.1188 6.1156 -0.6373 25 1 -6.2941 6.3096 -1.8569 26 1 -8.3095 5.2934 -0.9710 27 1 -7.5584 7.4368 -0.1211 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.2741 3.7118 -0.3037 34 1 3.6547 4.8113 -2.5149 35 1 2.0064 4.5090 -5.1644 36 1 3.7703 4.4450 -4.9350 37 1 2.9212 3.0764 -5.6927 38 1 4.1776 1.1353 1.5792 39 1 3.4185 1.7653 3.0605 40 1 2.8075 0.2690 2.3145 41 1 1.1080 2.8255 2.9240 42 1 0.5571 1.2526 2.2987 43 1 0.2202 3.1856 0.2672 44 1 -1.8873 4.8534 0.4639 45 1 -2.4389 3.2809 -0.1614 46 1 -7.5578 5.2144 2.0239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089576120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:42 Heat of formation + Delta-G solvation = 29.225428 kcal Electronic energy + Delta-G solvation = -27239.094077 eV Core-core repulsion = 23483.923134 eV Total energy + Delta-G solvation = -3755.170943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31526 -39.57570 -38.20538 -34.69006 -33.73709 -33.05151 -32.43278 -32.38656 -29.96193 -29.39216 -27.49356 -26.10133 -25.39827 -24.89607 -23.23999 -22.73267 -20.49088 -20.30489 -18.30922 -17.90862 -17.67659 -16.39186 -16.23038 -15.79415 -15.56378 -15.45330 -14.99355 -14.80025 -14.29800 -14.15132 -13.97606 -13.79033 -13.45202 -13.33946 -13.28368 -13.04638 -12.92107 -12.61737 -12.59768 -12.57864 -12.20068 -11.96944 -11.81359 -11.32369 -11.07166 -11.05846 -11.01575 -10.93617 -10.76740 -10.71079 -10.29684 -9.80459 -9.66874 -9.43921 -9.07602 -8.92476 -8.23812 -8.06762 -6.49790 -6.21567 -3.91943 0.65066 0.95628 2.39603 3.01963 3.07837 3.22083 3.28540 3.33525 3.43760 3.69022 4.00777 4.18177 4.20777 4.31863 4.38103 4.43900 4.60693 4.72154 4.80088 4.94069 5.11309 5.12311 5.13822 5.19170 5.22736 5.29562 5.31616 5.36597 5.38811 5.46884 5.53332 5.58455 5.66983 5.72235 5.76782 5.84426 5.87970 5.93592 6.02850 6.13947 6.35373 6.53624 6.76784 6.91802 7.60379 7.64824 8.35987 8.57975 8.72786 9.24139 10.85944 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.003133 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.142067 B = 8934.132727 C =10682.247454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.126 3.874 3 N -0.592 5.592 4 C 0.337 3.663 5 C -0.183 4.183 6 C -0.076 4.076 7 C 0.011 3.989 8 C -0.092 4.092 9 N -0.203 5.203 10 N -0.295 5.295 11 C 0.135 3.865 12 H 0.096 0.904 13 C -0.161 4.161 14 C 0.107 3.893 15 N -0.733 5.733 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.395 0.605 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.206 -4.925 -6.446 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.004 3.996 3 N -0.307 5.307 4 C 0.097 3.903 5 C -0.216 4.216 6 C -0.105 4.105 7 C -0.139 4.139 8 C -0.151 4.151 9 N -0.045 5.045 10 N -0.145 5.145 11 C 0.030 3.970 12 H 0.114 0.886 13 C -0.219 4.219 14 C -0.018 4.018 15 N -0.387 5.387 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.228 0.772 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 24.709 -6.848 -5.017 26.126 hybrid contribution 0.504 2.332 -1.756 2.962 sum 25.212 -4.516 -6.772 26.494 Atomic orbital electron populations 1.22319 0.95388 1.02249 1.03418 1.21413 0.94854 0.80761 1.02586 1.46543 1.69514 1.13690 1.00924 1.20075 0.91134 0.90154 0.88917 1.21927 1.03090 0.96688 0.99894 1.22074 0.96730 0.99948 0.91717 1.22596 0.99433 0.94524 0.97308 1.20539 1.02442 1.00583 0.91492 1.72739 1.08596 1.07143 1.16003 1.73070 1.19730 1.28224 0.93509 1.21469 0.95284 0.97028 0.83173 0.88588 1.22106 0.98840 1.01013 0.99983 1.21778 0.87710 0.98737 0.93602 1.45901 1.12609 1.62141 1.18098 1.20269 0.81657 0.78477 0.87616 1.90703 1.77737 1.50858 1.19824 1.23521 1.01715 1.02296 1.02824 1.85348 1.00238 1.76917 1.20650 1.22909 0.99717 1.43924 1.01763 0.90944 1.24982 0.96749 0.95626 0.96171 1.70023 1.14550 1.44567 1.21171 0.86124 0.79648 0.79047 0.80736 1.19611 1.20515 1.20540 0.91878 0.91944 0.91640 0.90096 0.90670 0.83626 0.83569 0.90366 0.90840 0.90431 0.91577 0.90583 0.91367 0.90392 0.90716 0.77178 0.89500 0.89420 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 9.79 37.16 0.36 -1.65 16 2 C 0.13 1.16 5.64 -4.04 -0.02 1.14 16 3 N -0.59 -5.30 2.04 -166.10 -0.34 -5.64 16 4 C 0.34 3.53 6.88 -154.77 -1.06 2.47 16 5 C -0.18 -1.52 9.39 -38.99 -0.37 -1.88 16 6 C -0.08 -0.60 9.86 -39.24 -0.39 -0.98 16 7 C 0.01 0.11 6.87 -82.40 -0.57 -0.46 16 8 C -0.09 -0.62 10.19 36.01 0.37 -0.26 16 9 N -0.20 -2.63 11.41 33.61 0.38 -2.24 16 10 N -0.30 -3.85 10.46 31.23 0.33 -3.52 16 11 C 0.13 0.98 2.74 -67.93 -0.19 0.80 16 12 H 0.10 0.59 5.40 -51.93 -0.28 0.30 16 13 C -0.16 -0.86 9.09 37.15 0.34 -0.53 16 14 C 0.11 1.12 4.33 -4.04 -0.02 1.11 16 15 N -0.73 -9.83 4.43 -60.29 -0.27 -10.10 16 16 C 0.53 10.00 7.85 -10.99 -0.09 9.91 16 17 O -0.52 -11.57 15.86 5.55 0.09 -11.48 16 18 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.53 -15.51 9.50 30.94 0.29 -15.21 16 21 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 22 C 0.07 2.13 5.49 -17.44 -0.10 2.04 16 23 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.86 4.96 -51.93 -0.26 0.60 16 31 H 0.08 0.80 7.59 -51.92 -0.39 0.41 16 32 H 0.08 0.55 6.21 -51.93 -0.32 0.23 16 33 H 0.15 0.84 5.94 -52.49 -0.31 0.53 16 34 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.38 6.54 -51.93 -0.34 0.04 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 43 H 0.39 4.90 7.68 -40.82 -0.31 4.59 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 45 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -36.10 388.97 -8.40 -44.50 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.75 Total: 1.87 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.21 Total: -6.49 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.84 Total: -47.15 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.10 -8.40 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089576120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.727 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds