Wall clock time and date at job start Tue Mar 31 2020 20:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47572 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47288 * 179.97438 * 7 6 5 9 9 C 1.38405 * 119.99966 * 180.02562 * 8 7 6 10 10 N 1.32495 * 119.21913 * 359.73077 * 9 8 7 11 11 C 1.32270 * 120.74078 * 179.72254 * 10 9 8 12 12 C 1.38601 * 119.19733 * 0.53826 * 11 10 9 13 13 C 1.38600 * 118.56218 * 359.73503 * 12 11 10 14 14 N 1.32277 * 119.19404 * 359.97438 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 1.08998 * 109.46564 * 300.00415 * 7 6 5 38 38 H 1.09002 * 109.46836 * 59.99804 * 7 6 5 39 39 H 0.97004 * 119.99872 * 359.97438 * 8 7 6 40 40 H 1.08004 * 120.40365 * 180.30441 * 11 10 9 41 41 H 1.08009 * 120.72292 * 179.75458 * 12 11 10 42 42 H 1.07996 * 120.40757 * 180.02562 * 13 12 11 43 43 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 44 44 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 45 45 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 46 46 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 6 5.5997 -1.2272 -2.6271 8 7 6.0881 -1.9187 -3.8227 9 6 7.4447 -1.9564 -4.0947 10 7 8.2874 -1.3574 -3.2661 11 6 9.5901 -1.3794 -3.4939 12 6 10.0685 -2.0294 -4.6207 13 6 9.1590 -2.6408 -5.4693 14 7 7.8694 -2.5865 -5.1801 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.4563 -1.8141 8.4830 26 1 4.2562 -0.5140 10.1409 27 1 3.1758 -2.3994 9.0638 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 5.8884 -0.1770 -2.6708 38 1 6.0340 -1.6867 -1.7392 39 1 5.4608 -2.3507 -4.4234 40 1 10.2725 -0.8935 -2.8123 41 1 11.1271 -2.0592 -4.8328 42 1 9.4991 -3.1559 -6.3555 43 1 2.2492 -1.6319 1.1524 44 1 1.9698 -1.5528 3.8298 45 1 3.6437 -1.1227 3.4038 46 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090035069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:26 Heat of formation + Delta-G solvation = -3.451159 kcal Electronic energy + Delta-G solvation = -25041.714983 eV Core-core repulsion = 21285.127077 eV Total energy + Delta-G solvation = -3756.587906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17943 -39.43721 -37.44304 -36.17256 -33.95716 -33.79454 -32.41487 -31.72574 -30.70061 -28.57172 -28.03874 -25.47103 -25.10177 -24.27080 -22.90761 -21.61323 -21.21796 -20.27190 -18.43665 -17.83512 -17.69551 -16.59394 -16.16894 -16.04826 -15.92371 -15.23644 -15.18262 -14.88266 -14.79131 -14.70826 -14.17355 -13.77728 -13.73158 -13.52695 -13.45510 -13.10062 -12.67377 -12.45006 -12.30481 -12.05074 -11.91316 -11.61138 -11.29488 -11.15959 -11.14572 -11.03223 -11.02607 -10.99343 -10.79907 -10.73789 -10.65877 -9.80711 -9.43352 -9.33841 -9.04982 -8.84764 -8.44540 -8.22048 -6.48156 -6.20177 -3.90546 0.84751 0.87703 2.51953 3.07060 3.14188 3.24324 3.28524 3.32996 3.60479 3.76066 3.86228 4.21979 4.26889 4.37269 4.46487 4.58963 4.63807 4.89652 4.90892 4.96331 5.01731 5.06922 5.14785 5.20919 5.32475 5.40355 5.45960 5.49622 5.52822 5.54676 5.62309 5.68677 5.73699 5.89211 5.91412 5.93338 6.04883 6.11114 6.16213 6.24299 6.46179 6.73482 6.75090 7.10269 7.60523 7.76934 8.00548 8.36319 8.66928 9.24955 10.87149 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.001919 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.425588 B =14589.320128 C =16937.057685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.135 3.865 8 N -0.698 5.698 9 C 0.562 3.438 10 N -0.566 5.566 11 C 0.193 3.807 12 C -0.297 4.297 13 C 0.191 3.809 14 N -0.576 5.576 15 N -0.733 5.733 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.413 0.587 40 H 0.167 0.833 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.396 0.604 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.851 -8.638 -28.310 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.162 4.162 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.011 3.989 8 N -0.335 5.335 9 C 0.205 3.795 10 N -0.289 5.289 11 C 0.025 3.975 12 C -0.323 4.323 13 C 0.023 3.977 14 N -0.298 5.298 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.250 0.750 40 H 0.184 0.816 41 H 0.161 0.839 42 H 0.183 0.817 43 H 0.230 0.770 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.281 -6.367 -27.699 28.908 hybrid contribution 1.608 -2.799 0.352 3.247 sum 6.889 -9.165 -27.347 29.653 Atomic orbital electron populations 1.22186 0.95567 1.01912 1.02577 1.20898 0.93814 0.97730 0.83871 0.89437 1.21875 0.95525 1.01156 0.97594 1.21499 0.95403 1.01324 0.97293 1.21816 0.93896 1.01677 0.99483 1.21385 0.93650 0.97332 0.86532 1.44195 1.01628 1.59528 1.28123 1.19382 0.87276 0.87107 0.85735 1.67977 1.04334 1.24232 1.32370 1.22992 0.90576 0.90296 0.93587 1.22540 1.02501 1.07382 0.99861 1.22902 0.87038 0.90879 0.96862 1.67901 1.18506 1.23661 1.19760 1.46107 1.69288 1.13793 1.09598 1.20285 0.76807 0.87235 0.83806 1.90695 1.48290 1.15816 1.84447 1.23539 1.03645 1.04814 0.98481 1.85382 1.86524 1.12914 0.98510 1.22831 1.51192 0.98129 0.96269 0.91021 1.24989 0.95103 0.95540 0.97952 1.70010 1.45533 1.13228 1.21520 0.86230 0.79305 0.80028 0.79973 1.19949 1.20820 1.19960 0.92692 0.91707 0.92028 0.91392 0.90516 0.91238 0.91078 0.91252 0.91277 0.91338 0.91279 0.75045 0.81565 0.83910 0.81726 0.77019 0.89346 0.89326 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.48 37.16 0.35 -1.40 16 2 C 0.14 1.55 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -0.91 4.75 -26.73 -0.13 -1.03 16 5 C -0.12 -0.88 5.10 -26.74 -0.14 -1.02 16 6 C -0.13 -0.80 5.33 -26.73 -0.14 -0.94 16 7 C 0.13 1.08 5.65 -4.04 -0.02 1.06 16 8 N -0.70 -5.99 5.70 -62.31 -0.36 -6.35 16 9 C 0.56 5.93 8.43 -322.80 -2.72 3.21 16 10 N -0.57 -6.03 9.59 -13.93 -0.13 -6.17 16 11 C 0.19 1.51 11.30 -17.23 -0.19 1.32 16 12 C -0.30 -1.85 10.16 -39.31 -0.40 -2.25 16 13 C 0.19 1.37 11.30 -17.23 -0.19 1.17 16 14 N -0.58 -5.70 10.46 -13.93 -0.15 -5.85 16 15 N -0.73 -9.35 4.53 -53.80 -0.24 -9.59 16 16 C 0.53 9.76 7.81 -10.98 -0.09 9.67 16 17 O -0.52 -11.62 15.53 5.55 0.09 -11.54 16 18 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.61 7.75 -51.92 -0.40 0.21 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.41 2.88 8.59 -40.82 -0.35 2.53 16 40 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 42 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.40 3.96 8.60 -40.82 -0.35 3.61 16 44 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -36.63 404.02 -12.01 -48.65 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.38 Total: 2.39 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.43 Total: -4.74 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.14 Total: -53.47 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.63 -12.01 -48.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090035069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.195 kcal (2) G-P(sol) polarization free energy of solvation -36.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds