Wall clock time and date at job start Tue Mar 31 2020 21:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47385 * 2 1 4 4 C 1.46501 * 119.99867 * 270.00118 * 3 2 1 5 5 C 1.53002 * 109.47182 * 269.99829 * 4 3 2 6 6 C 1.53002 * 109.46928 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46811 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00154 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99868 * 359.97438 * 8 7 6 10 10 C 1.50705 * 120.00213 * 179.97438 * 8 7 6 11 11 S 1.81000 * 109.47094 * 179.97438 * 10 8 7 12 12 C 1.76195 * 100.00132 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00411 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99594 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47492 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47266 * 119.99913 * 16 14 12 19 19 H 1.48500 * 109.47283 * 239.99590 * 16 14 12 20 20 C 1.38539 * 120.00245 * 89.99772 * 3 2 1 21 21 C 1.39663 * 120.52859 * 5.00249 * 20 3 2 22 22 C 1.38083 * 118.33091 * 179.74208 * 21 20 3 23 23 N 1.32579 * 119.19843 * 0.25550 * 22 21 20 24 24 C 1.31755 * 121.01540 * 359.97438 * 23 22 21 25 25 C 1.50697 * 119.08600 * 180.02562 * 24 23 22 26 26 N 1.31785 * 121.83129 * 0.02562 * 24 23 22 27 27 H 1.09004 * 109.46653 * 300.00107 * 1 2 3 28 28 H 1.09000 * 109.46855 * 59.99700 * 1 2 3 29 29 H 1.08998 * 109.47445 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46824 * 239.99613 * 2 1 3 31 31 H 1.09000 * 109.46855 * 120.00300 * 2 1 3 32 32 H 1.09006 * 109.47250 * 30.00049 * 4 3 2 33 33 H 1.09005 * 109.47129 * 150.00245 * 4 3 2 34 34 H 1.08994 * 109.47034 * 299.99873 * 5 4 3 35 35 H 1.08996 * 109.46974 * 60.00186 * 5 4 3 36 36 H 1.08994 * 109.47248 * 299.99850 * 6 5 4 37 37 H 1.08996 * 109.47053 * 60.00342 * 6 5 4 38 38 H 0.97007 * 119.99927 * 359.97438 * 7 6 5 39 39 H 1.08989 * 109.47293 * 300.00377 * 10 8 7 40 40 H 1.09005 * 109.46585 * 60.00242 * 10 8 7 41 41 H 0.97000 * 119.99442 * 180.02562 * 15 14 12 42 42 H 1.08002 * 120.83789 * 0.02562 * 21 20 3 43 43 H 1.07996 * 120.39907 * 180.23007 * 22 21 20 44 44 H 1.09005 * 109.47098 * 89.99547 * 25 24 23 45 45 H 1.08993 * 109.47316 * 209.99938 * 25 24 23 46 46 H 1.09003 * 109.46666 * 329.99949 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7105 6 6 3.9624 2.5520 -3.0358 7 7 5.3458 2.3212 -3.4590 8 6 5.7988 2.8636 -4.6066 9 8 5.0610 3.5424 -5.2892 10 6 7.2221 2.6267 -5.0417 11 16 7.5235 3.4792 -6.6097 12 6 9.2102 3.0445 -6.8751 13 1 9.7268 2.4229 -6.1587 14 6 9.8752 3.5008 -8.0047 15 7 9.2457 4.2588 -8.8776 16 14 11.6631 3.0393 -8.2863 17 1 12.1361 2.1852 -7.1674 18 1 11.7864 2.2929 -9.5643 19 1 12.4883 4.2722 -8.3517 20 6 2.2493 2.0343 1.1998 21 6 2.1205 1.3553 2.4134 22 6 2.3666 2.0490 3.5817 23 7 2.7094 3.3279 3.5145 24 6 2.8181 3.9416 2.3537 25 6 3.2112 5.3961 2.3280 26 7 2.5926 3.3187 1.2144 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 4.3884 2.2154 -0.9509 35 1 3.8745 0.7621 -1.8408 36 1 3.2816 2.1675 -3.7952 37 1 3.7953 3.6212 -2.9059 38 1 5.9360 1.7786 -2.9129 39 1 7.9029 3.0108 -4.2822 40 1 7.3889 1.5574 -5.1720 41 1 9.7103 4.5774 -9.6673 42 1 1.8399 0.3126 2.4374 43 1 2.2804 1.5557 4.5386 44 1 4.2967 5.4783 2.2726 45 1 2.7655 5.8776 1.4577 46 1 2.8556 5.8846 3.2353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095829576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:51 Heat of formation + Delta-G solvation = 8.746998 kcal Electronic energy + Delta-G solvation = -25581.872022 eV Core-core repulsion = 21825.813067 eV Total energy + Delta-G solvation = -3756.058954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30310 -39.20231 -38.23200 -35.33563 -33.80727 -33.00292 -32.48233 -32.41884 -30.22892 -29.00957 -28.50453 -25.80595 -25.38224 -24.36520 -23.38425 -22.13764 -21.07505 -20.24788 -17.99055 -17.85486 -17.82020 -16.32363 -16.17557 -15.82458 -15.70547 -15.54489 -15.20985 -14.89835 -14.80264 -14.45901 -14.24337 -13.98670 -13.72142 -13.45164 -13.11608 -12.94115 -12.80719 -12.68003 -12.63271 -12.50079 -12.37518 -11.82061 -11.79123 -11.66086 -11.34279 -11.09322 -11.06101 -11.01636 -10.84676 -10.75556 -10.02662 -9.80436 -9.44292 -9.39881 -9.07621 -8.87602 -8.34507 -8.22625 -6.49558 -6.21618 -3.91924 0.75333 1.08814 2.29762 3.05519 3.11411 3.21598 3.28509 3.33449 3.57534 3.71967 3.80114 3.98209 4.20536 4.25824 4.44637 4.59743 4.64033 4.74370 4.76792 4.91088 4.93360 5.07780 5.11834 5.12962 5.13662 5.19788 5.24662 5.26865 5.31994 5.35265 5.45801 5.55779 5.64416 5.64697 5.70919 5.82239 5.91452 5.97637 6.10086 6.14565 6.31778 6.62175 6.82476 7.05125 7.60129 7.71460 8.02322 8.35695 8.62500 9.23833 10.85888 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.001798 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.898022 B =15568.594140 C =16292.621926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 N -0.594 5.594 4 C 0.127 3.873 5 C -0.143 4.143 6 C 0.126 3.874 7 N -0.739 5.739 8 C 0.531 3.469 9 O -0.518 6.518 10 C -0.153 4.153 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.072 3.928 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.443 3.557 21 C -0.303 4.303 22 C 0.177 3.823 23 N -0.566 5.566 24 C 0.361 3.639 25 C -0.086 4.086 26 N -0.573 5.573 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.140 0.860 43 H 0.163 0.837 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.536 -9.201 25.419 32.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.007 4.007 3 N -0.306 5.306 4 C 0.004 3.996 5 C -0.183 4.183 6 C 0.001 3.999 7 N -0.394 5.394 8 C 0.317 3.683 9 O -0.392 6.392 10 C -0.304 4.304 11 S 0.166 5.834 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.503 5.503 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.200 3.800 21 C -0.331 4.331 22 C 0.015 3.985 23 N -0.285 5.285 24 C 0.092 3.908 25 C -0.145 4.145 26 N -0.297 5.297 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.158 0.842 43 H 0.180 0.820 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.570 -7.131 23.916 31.107 hybrid contribution 2.035 -2.452 0.867 3.303 sum -16.534 -9.584 24.783 31.296 Atomic orbital electron populations 1.22225 0.95641 1.02480 1.02769 1.21578 0.94463 0.81100 1.03539 1.46565 1.68046 1.13220 1.02729 1.21383 0.95300 0.99194 0.83731 1.22144 0.97941 1.01028 0.97162 1.21122 0.83564 1.00576 0.94651 1.45983 1.13188 1.55256 1.24942 1.20305 0.89380 0.78658 0.79921 1.90703 1.57894 1.37491 1.53094 1.23530 0.94822 1.05664 1.06379 1.85396 1.14674 1.65640 1.17690 1.22909 0.96844 1.37559 1.10978 0.90894 1.25002 0.99078 0.94643 0.94950 1.70032 1.36800 1.32444 1.10990 0.86109 0.82727 0.78349 0.78255 1.19638 1.20576 1.20553 1.18520 0.86905 0.88248 0.86321 1.22160 1.14975 1.02916 0.93072 1.22856 0.88213 0.89429 0.97990 1.68276 1.20203 1.10848 1.29210 1.22979 0.88142 0.97042 0.82614 1.20580 1.02733 0.87126 1.04053 1.67810 1.21946 1.08177 1.31775 0.92398 0.92038 0.91208 0.89682 0.90219 0.90291 0.88818 0.91007 0.91430 0.91628 0.91348 0.76926 0.89251 0.89281 0.92242 0.84199 0.82001 0.89519 0.89646 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.24 37.16 0.38 -0.37 16 2 C 0.12 0.55 6.00 -4.04 -0.02 0.53 16 3 N -0.59 -4.39 2.58 -173.65 -0.45 -4.84 16 4 C 0.13 0.98 5.48 -4.04 -0.02 0.96 16 5 C -0.14 -1.20 5.65 -26.73 -0.15 -1.35 16 6 C 0.13 1.43 5.67 -4.04 -0.02 1.41 16 7 N -0.74 -9.96 5.56 -60.30 -0.33 -10.29 16 8 C 0.53 10.03 7.85 -10.98 -0.09 9.95 16 9 O -0.52 -11.89 15.86 5.55 0.09 -11.80 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 12 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 13 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 16 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.44 4.12 7.39 -154.79 -1.14 2.97 16 21 C -0.30 -2.31 9.33 -39.11 -0.36 -2.67 16 22 C 0.18 1.42 11.29 -17.29 -0.20 1.22 16 23 N -0.57 -5.85 10.33 -10.81 -0.11 -5.96 16 24 C 0.36 3.77 7.64 -157.24 -1.20 2.56 16 25 C -0.09 -0.67 10.32 36.00 0.37 -0.30 16 26 N -0.57 -6.20 9.13 -9.96 -0.09 -6.30 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 31 H 0.08 0.30 6.05 -51.93 -0.31 -0.01 16 32 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.09 0.86 7.33 -51.93 -0.38 0.48 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.40 4.25 8.47 -40.82 -0.35 3.91 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.14 0.71 6.16 -52.49 -0.32 0.38 16 43 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -36.70 402.15 -10.62 -47.32 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.24 Total: -0.22 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.04 Total: -1.04 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.25 Total: -52.92 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.70 -10.62 -47.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095829576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.064 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds