Wall clock time and date at job start Tue Mar 31 2020 21:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47385 * 2 1 4 4 C 1.46501 * 119.99867 * 270.00118 * 3 2 1 5 5 C 1.53002 * 109.47182 * 269.99829 * 4 3 2 6 6 C 1.53002 * 109.46928 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46811 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00154 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99868 * 359.97438 * 8 7 6 10 10 C 1.50705 * 120.00213 * 179.97438 * 8 7 6 11 11 S 1.81000 * 109.47094 * 179.97438 * 10 8 7 12 12 C 1.76195 * 100.00132 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00411 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99594 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47492 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47266 * 119.99913 * 16 14 12 19 19 H 1.48500 * 109.47283 * 239.99590 * 16 14 12 20 20 C 1.38539 * 120.00245 * 89.99772 * 3 2 1 21 21 C 1.39663 * 120.52859 * 5.00249 * 20 3 2 22 22 C 1.38083 * 118.33091 * 179.74208 * 21 20 3 23 23 N 1.32579 * 119.19843 * 0.25550 * 22 21 20 24 24 C 1.31755 * 121.01540 * 359.97438 * 23 22 21 25 25 C 1.50697 * 119.08600 * 180.02562 * 24 23 22 26 26 N 1.31785 * 121.83129 * 0.02562 * 24 23 22 27 27 H 1.09004 * 109.46653 * 300.00107 * 1 2 3 28 28 H 1.09000 * 109.46855 * 59.99700 * 1 2 3 29 29 H 1.08998 * 109.47445 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46824 * 239.99613 * 2 1 3 31 31 H 1.09000 * 109.46855 * 120.00300 * 2 1 3 32 32 H 1.09006 * 109.47250 * 30.00049 * 4 3 2 33 33 H 1.09005 * 109.47129 * 150.00245 * 4 3 2 34 34 H 1.08994 * 109.47034 * 299.99873 * 5 4 3 35 35 H 1.08996 * 109.46974 * 60.00186 * 5 4 3 36 36 H 1.08994 * 109.47248 * 299.99850 * 6 5 4 37 37 H 1.08996 * 109.47053 * 60.00342 * 6 5 4 38 38 H 0.97007 * 119.99927 * 359.97438 * 7 6 5 39 39 H 1.08989 * 109.47293 * 300.00377 * 10 8 7 40 40 H 1.09005 * 109.46585 * 60.00242 * 10 8 7 41 41 H 0.97000 * 119.99442 * 180.02562 * 15 14 12 42 42 H 1.08002 * 120.83789 * 0.02562 * 21 20 3 43 43 H 1.07996 * 120.39907 * 180.23007 * 22 21 20 44 44 H 1.09005 * 109.47098 * 89.99547 * 25 24 23 45 45 H 1.08993 * 109.47316 * 209.99938 * 25 24 23 46 46 H 1.09003 * 109.46666 * 329.99949 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7105 6 6 3.9624 2.5520 -3.0358 7 7 5.3458 2.3212 -3.4590 8 6 5.7988 2.8636 -4.6066 9 8 5.0610 3.5424 -5.2892 10 6 7.2221 2.6267 -5.0417 11 16 7.5235 3.4792 -6.6097 12 6 9.2102 3.0445 -6.8751 13 1 9.7268 2.4229 -6.1587 14 6 9.8752 3.5008 -8.0047 15 7 9.2457 4.2588 -8.8776 16 14 11.6631 3.0393 -8.2863 17 1 12.1361 2.1852 -7.1674 18 1 11.7864 2.2929 -9.5643 19 1 12.4883 4.2722 -8.3517 20 6 2.2493 2.0343 1.1998 21 6 2.1205 1.3553 2.4134 22 6 2.3666 2.0490 3.5817 23 7 2.7094 3.3279 3.5145 24 6 2.8181 3.9416 2.3537 25 6 3.2112 5.3961 2.3280 26 7 2.5926 3.3187 1.2144 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 4.3884 2.2154 -0.9509 35 1 3.8745 0.7621 -1.8408 36 1 3.2816 2.1675 -3.7952 37 1 3.7953 3.6212 -2.9059 38 1 5.9360 1.7786 -2.9129 39 1 7.9029 3.0108 -4.2822 40 1 7.3889 1.5574 -5.1720 41 1 9.7103 4.5774 -9.6673 42 1 1.8399 0.3126 2.4374 43 1 2.2804 1.5557 4.5386 44 1 4.2967 5.4783 2.2726 45 1 2.7655 5.8776 1.4577 46 1 2.8556 5.8846 3.2353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095829576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:50 Heat of formation + Delta-G solvation = -15.033417 kcal Electronic energy + Delta-G solvation = -25582.903218 eV Core-core repulsion = 21825.813067 eV Total energy + Delta-G solvation = -3757.090150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92914 -40.62477 -38.86595 -36.44661 -34.59144 -34.43592 -33.76560 -33.23077 -31.27796 -29.97712 -29.24751 -27.70108 -26.49999 -24.83751 -24.09461 -22.89864 -21.93649 -21.39615 -19.82905 -18.64499 -18.41435 -17.78627 -17.27239 -16.89153 -16.88018 -16.46172 -16.19372 -16.05384 -15.83026 -15.60308 -15.28625 -14.84772 -14.70759 -14.46613 -14.22152 -14.05519 -13.84292 -13.41698 -13.35049 -13.21317 -13.16633 -13.09651 -12.91351 -12.84219 -12.63364 -12.54990 -12.07826 -11.99186 -11.81384 -11.71589 -11.44183 -11.16393 -11.00279 -10.63574 -10.28162 -10.13696 -10.11404 -8.92406 -8.67474 -8.35401 -6.13472 0.12257 0.44858 1.26287 1.41131 1.46340 1.57492 1.60099 1.75853 2.25899 2.31912 2.92913 2.98746 3.17978 3.31468 3.40749 3.73240 3.89370 3.96445 4.00135 4.06809 4.17530 4.27085 4.29315 4.36256 4.41828 4.48977 4.49759 4.54283 4.58127 4.64764 4.72932 4.76764 4.81770 4.89114 4.96604 5.04204 5.10838 5.15263 5.32805 5.41476 5.42284 5.49630 5.77382 6.19557 6.22048 6.45879 6.48371 7.05964 7.22662 7.36669 8.74106 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.001798 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.898022 B =15568.594140 C =16292.621926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.591 5.591 4 C 0.130 3.870 5 C -0.123 4.123 6 C 0.126 3.874 7 N -0.713 5.713 8 C 0.533 3.467 9 O -0.566 6.566 10 C -0.130 4.130 11 S -0.152 6.152 12 C -0.545 4.545 13 H 0.083 0.917 14 C 0.012 3.988 15 N -0.911 5.911 16 Si 1.000 3.000 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.274 1.274 20 C 0.424 3.576 21 C -0.298 4.298 22 C 0.166 3.834 23 N -0.587 5.587 24 C 0.340 3.660 25 C -0.083 4.083 26 N -0.596 5.596 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.415 0.585 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.167 0.833 43 H 0.193 0.807 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 -11.854 27.206 34.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.303 5.303 4 C 0.006 3.994 5 C -0.163 4.163 6 C 0.002 3.998 7 N -0.367 5.367 8 C 0.319 3.681 9 O -0.444 6.444 10 C -0.281 4.281 11 S 0.075 5.925 12 C -0.693 4.693 13 H 0.101 0.899 14 C -0.193 4.193 15 N -0.548 5.548 16 Si 0.822 3.178 17 H -0.180 1.180 18 H -0.199 1.199 19 H -0.199 1.199 20 C 0.181 3.819 21 C -0.325 4.325 22 C 0.006 3.994 23 N -0.308 5.308 24 C 0.072 3.928 25 C -0.142 4.142 26 N -0.322 5.322 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.252 0.748 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.185 0.815 43 H 0.210 0.790 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.987 -9.837 25.763 32.924 hybrid contribution 1.731 -1.687 0.421 2.453 sum -16.256 -11.524 26.183 32.903 Atomic orbital electron populations 1.22179 0.95412 1.03253 1.01751 1.21808 0.94579 0.79686 1.04898 1.46699 1.67682 1.14030 1.01886 1.21287 0.95140 0.98471 0.84521 1.21960 0.98127 1.01466 0.94709 1.21235 0.82014 1.00291 0.96256 1.45748 1.14331 1.53626 1.23036 1.20068 0.88486 0.78621 0.80967 1.90693 1.58755 1.39947 1.55004 1.23372 0.96455 1.05818 1.02442 1.85578 1.15642 1.67919 1.23325 1.23232 0.96873 1.37700 1.11511 0.89924 1.26150 1.04385 0.94287 0.94477 1.70193 1.39081 1.33775 1.11703 0.84887 0.76016 0.78306 0.78613 1.18044 1.19873 1.19945 1.18893 0.87209 0.88203 0.87569 1.22431 1.13877 1.04016 0.92189 1.23429 0.87517 0.88905 0.99571 1.68307 1.21075 1.12148 1.29221 1.23358 0.88661 0.97966 0.82816 1.20602 1.02904 0.86261 1.04411 1.67817 1.22921 1.09294 1.32155 0.93512 0.92948 0.89508 0.88318 0.88835 0.88672 0.90741 0.92095 0.89546 0.91530 0.92795 0.74848 0.87392 0.87098 0.91982 0.81519 0.79022 0.89193 0.89733 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 71.98 0.74 -0.35 16 2 C 0.11 0.74 6.00 86.38 0.52 1.26 16 3 N -0.59 -7.66 2.58 -703.31 -1.81 -9.47 16 4 C 0.13 1.82 5.48 86.38 0.47 2.30 16 5 C -0.12 -1.82 5.65 30.60 0.17 -1.65 16 6 C 0.13 2.72 5.67 86.38 0.49 3.21 16 7 N -0.71 -17.97 5.56 -463.07 -2.57 -20.54 16 8 C 0.53 19.79 7.85 87.66 0.69 20.48 16 9 O -0.57 -26.45 15.86 -3.05 -0.05 -26.50 16 10 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 11 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 12 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 13 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 14 C 0.01 0.67 5.49 84.86 0.47 1.13 16 15 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 16 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 C 0.42 7.38 7.39 133.18 0.98 8.36 16 21 C -0.30 -3.94 9.33 22.58 0.21 -3.73 16 22 C 0.17 2.41 11.29 84.54 0.95 3.36 16 23 N -0.59 -11.83 10.33 -188.12 -1.94 -13.78 16 24 C 0.34 7.13 7.64 138.76 1.06 8.19 16 25 C -0.08 -1.32 10.32 71.24 0.73 -0.59 16 26 N -0.60 -12.87 9.13 -185.44 -1.69 -14.56 16 27 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.10 0.42 8.07 -2.39 -0.02 0.40 16 31 H 0.09 0.38 6.05 -2.39 -0.01 0.36 16 32 H 0.10 1.04 8.07 -2.38 -0.02 1.02 16 33 H 0.07 1.37 7.33 -2.38 -0.02 1.35 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.41 7.68 8.47 -92.70 -0.79 6.89 16 39 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 40 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.17 1.15 6.16 -2.91 -0.02 1.13 16 43 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -82.36 402.15 1.85 -80.51 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.20 Total: 17.51 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 8.57 Total: 6.63 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -7.73 Total: -114.25 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -82.36 1.85 -80.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095829576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.474 kcal (2) G-P(sol) polarization free energy of solvation -82.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds