Wall clock time and date at job start Tue Mar 31 2020 21:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47253 * 2 1 4 4 C 1.46493 * 120.00124 * 270.00325 * 3 2 1 5 5 C 1.53000 * 109.47003 * 269.99485 * 4 3 2 6 6 C 1.53007 * 109.46901 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.46774 * 180.02562 * 6 5 4 8 8 C 1.34770 * 119.99531 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00606 * 359.97438 * 8 7 6 10 10 C 1.50707 * 119.99898 * 180.02562 * 8 7 6 11 11 S 1.80992 * 109.47489 * 180.02562 * 10 8 7 12 12 C 1.76193 * 100.00298 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.38800 * 120.00414 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00509 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99631 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47459 * 89.99973 * 16 14 12 18 18 H 1.48503 * 109.47057 * 209.99940 * 16 14 12 19 19 H 1.48504 * 109.46865 * 329.99523 * 16 14 12 20 20 C 1.38413 * 119.99592 * 89.99818 * 3 2 1 21 21 N 1.32507 * 119.21392 * 180.02562 * 20 3 2 22 22 C 1.32258 * 120.74103 * 179.97438 * 21 20 3 23 23 C 1.38627 * 119.19174 * 0.02562 * 22 21 20 24 24 C 1.38583 * 118.56118 * 359.97438 * 23 22 21 25 25 C 1.50706 * 120.39905 * 180.02562 * 24 23 22 26 26 N 1.32280 * 119.19846 * 0.27668 * 24 23 22 27 27 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47368 * 299.99588 * 1 2 3 29 29 H 1.09001 * 109.46897 * 60.00375 * 1 2 3 30 30 H 1.08997 * 109.47368 * 240.00412 * 2 1 3 31 31 H 1.08995 * 109.47471 * 120.00313 * 2 1 3 32 32 H 1.09005 * 109.47199 * 29.99853 * 4 3 2 33 33 H 1.09001 * 109.47012 * 149.99202 * 4 3 2 34 34 H 1.09000 * 109.47008 * 300.00057 * 5 4 3 35 35 H 1.08997 * 109.47029 * 60.00162 * 5 4 3 36 36 H 1.09000 * 109.47139 * 299.99736 * 6 5 4 37 37 H 1.08997 * 109.47343 * 60.00113 * 6 5 4 38 38 H 0.96998 * 119.99997 * 0.02562 * 7 6 5 39 39 H 1.09000 * 109.46696 * 299.99912 * 10 8 7 40 40 H 1.08997 * 109.47102 * 59.99870 * 10 8 7 41 41 H 0.96992 * 120.00240 * 180.02562 * 15 14 12 42 42 H 1.07995 * 120.40771 * 180.02562 * 22 21 20 43 43 H 1.08007 * 120.71910 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47015 * 90.00484 * 25 24 23 45 45 H 1.09000 * 109.46646 * 209.99636 * 25 24 23 46 46 H 1.09000 * 109.47248 * 330.00354 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7103 6 6 3.9626 2.5534 -3.0350 7 7 5.3461 2.3227 -3.4582 8 6 5.7990 2.8652 -4.6058 9 8 5.0613 3.5440 -5.2883 10 6 7.2220 2.6275 -5.0415 11 16 7.5240 3.4815 -6.6084 12 6 9.2107 3.0468 -6.8739 13 1 9.7272 2.4250 -6.1576 14 6 9.8756 3.5033 -8.0035 15 7 11.1358 3.1789 -8.2015 16 14 8.9824 4.5793 -9.2420 17 1 9.1509 6.0070 -8.8700 18 1 9.5485 4.3504 -10.5957 19 1 7.5376 4.2356 -9.2451 20 6 2.2490 2.0337 1.1987 21 7 2.6902 3.2830 1.1807 22 6 2.9202 3.9351 2.3081 23 6 2.6946 3.2956 3.5172 24 6 2.2332 1.9890 3.4996 25 6 1.9735 1.2546 4.7898 26 7 2.0282 1.3926 2.3369 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 4.3883 2.2157 -0.9506 35 1 3.8745 0.7624 -1.8407 36 1 3.2819 2.1696 -3.7949 37 1 3.7958 3.6225 -2.9043 38 1 5.9359 1.7790 -2.9129 39 1 7.9034 3.0110 -4.2820 40 1 7.3882 1.5583 -5.1721 41 1 11.6006 3.4982 -8.9907 42 1 3.2793 4.9534 2.2870 43 1 2.8738 3.8050 4.4526 44 1 0.9418 1.4197 5.1005 45 1 2.1417 0.1880 4.6408 46 1 2.6489 1.6249 5.5610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095829655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:55 Heat of formation + Delta-G solvation = 11.493810 kcal Electronic energy + Delta-G solvation = -25532.523710 eV Core-core repulsion = 21776.583866 eV Total energy + Delta-G solvation = -3755.939844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30886 -39.28236 -37.94787 -35.28730 -34.63878 -32.64169 -32.42559 -32.29933 -30.33757 -29.00212 -28.52858 -25.74139 -25.42934 -24.54267 -22.95905 -22.42327 -21.11057 -20.28879 -18.00639 -17.84201 -17.62459 -16.37135 -16.16503 -15.91587 -15.72673 -15.63877 -15.10457 -14.91839 -14.85719 -14.48982 -14.11076 -13.90050 -13.71965 -13.49546 -13.24723 -13.13854 -12.84247 -12.78073 -12.73787 -12.55755 -12.30044 -11.88871 -11.78145 -11.38969 -11.25253 -11.19698 -11.07694 -10.99356 -10.86707 -10.59878 -10.40121 -9.84546 -9.51210 -9.35851 -9.00398 -8.93211 -8.48514 -8.23840 -6.90260 -6.27724 -3.99302 0.85563 0.91328 2.27121 2.79909 3.00899 3.32869 3.36349 3.51844 3.58093 3.69247 3.76751 4.13402 4.28449 4.34445 4.61628 4.68631 4.72159 4.77377 4.83763 4.86016 4.92548 5.00614 5.04644 5.07965 5.08170 5.11295 5.15589 5.32842 5.33425 5.39424 5.44938 5.49583 5.56016 5.62839 5.76995 5.83296 5.86851 5.95773 6.03476 6.05050 6.50040 6.57186 6.63030 7.13522 7.63879 7.95340 8.01007 8.42859 8.52058 9.18493 10.81498 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.001741 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.074301 B =16074.736736 C =16605.941195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 N -0.582 5.582 4 C 0.135 3.865 5 C -0.144 4.144 6 C 0.126 3.874 7 N -0.737 5.737 8 C 0.530 3.470 9 O -0.520 6.520 10 C -0.124 4.124 11 S -0.142 6.142 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C 0.568 3.432 21 N -0.570 5.570 22 C 0.195 3.805 23 C -0.296 4.296 24 C 0.215 3.785 25 C -0.106 4.106 26 N -0.570 5.570 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.166 0.834 43 H 0.141 0.859 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.795 -5.738 27.153 35.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.003 3.997 3 N -0.297 5.297 4 C 0.012 3.988 5 C -0.184 4.184 6 C 0.001 3.999 7 N -0.391 5.391 8 C 0.316 3.684 9 O -0.395 6.395 10 C -0.275 4.275 11 S 0.085 5.915 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C 0.213 3.787 21 N -0.292 5.292 22 C 0.027 3.973 23 C -0.322 4.322 24 C 0.067 3.933 25 C -0.163 4.163 26 N -0.294 5.294 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.233 0.767 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.183 0.817 43 H 0.159 0.841 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.077 -5.173 24.839 34.297 hybrid contribution 1.302 -0.120 1.264 1.819 sum -21.775 -5.293 26.104 34.403 Atomic orbital electron populations 1.22143 0.96028 1.02111 1.02186 1.21432 0.94206 0.80756 1.03266 1.46217 1.68420 1.13569 1.01530 1.21341 0.95311 0.98919 0.83277 1.22160 0.98075 1.01097 0.97047 1.21143 0.83331 1.00600 0.94807 1.45944 1.13364 1.54979 1.24807 1.20266 0.89284 0.78763 0.80079 1.90696 1.57895 1.37704 1.53185 1.23281 0.95074 1.05452 1.03682 1.84776 1.16616 1.67980 1.22179 1.22325 0.94129 1.38109 1.12353 0.89403 1.24716 0.94346 0.95209 0.97049 1.69936 1.09380 1.44176 1.28227 0.86731 0.82543 0.81610 0.80942 1.19204 1.19950 1.15913 1.19263 0.87671 0.85563 0.86176 1.67945 1.20698 1.08561 1.31983 1.22951 0.88708 0.98918 0.86712 1.22360 1.11354 0.97771 1.00733 1.21401 0.87804 0.90920 0.93154 1.20777 1.02962 1.00962 0.91632 1.67711 1.25230 1.38939 0.97514 0.91545 0.92452 0.92661 0.90454 0.89527 0.90121 0.88998 0.90864 0.91327 0.91567 0.91306 0.76737 0.88535 0.88496 0.91956 0.81660 0.84138 0.89814 0.90137 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.13 0.89 6.13 -4.04 -0.02 0.87 16 3 N -0.58 -5.16 2.57 -176.03 -0.45 -5.61 16 4 C 0.14 1.10 5.41 -4.05 -0.02 1.08 16 5 C -0.14 -1.24 5.65 -26.73 -0.15 -1.39 16 6 C 0.13 1.40 5.67 -4.04 -0.02 1.37 16 7 N -0.74 -9.60 5.56 -60.29 -0.33 -9.94 16 8 C 0.53 9.60 7.85 -10.99 -0.09 9.51 16 9 O -0.52 -11.41 15.86 5.56 0.09 -11.33 16 10 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 11 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 12 C -0.52 -15.18 10.04 30.94 0.31 -14.86 16 13 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 15 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 16 Si 0.86 21.96 27.74 -169.99 -4.72 17.24 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 20 C 0.57 5.97 8.17 -322.80 -2.64 3.33 16 21 N -0.57 -5.98 9.11 -13.93 -0.13 -6.11 16 22 C 0.19 1.57 11.30 -17.22 -0.19 1.38 16 23 C -0.30 -2.06 9.85 -39.31 -0.39 -2.45 16 24 C 0.22 1.71 6.82 -82.27 -0.56 1.15 16 25 C -0.11 -0.48 10.22 36.01 0.37 -0.11 16 26 N -0.57 -5.68 9.05 -10.15 -0.09 -5.78 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.09 0.67 7.33 -51.93 -0.38 0.29 16 32 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.09 0.85 7.33 -51.93 -0.38 0.47 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 39 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 40 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -36.33 401.76 -11.14 -47.47 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.44 Total: -0.10 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.90 Total: -0.31 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.23 Total: -53.38 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.24 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.33 -11.14 -47.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095829655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.960 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds