Wall clock time and date at job start Tue Mar 31 2020 21:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47253 * 2 1 4 4 C 1.46493 * 120.00124 * 270.00325 * 3 2 1 5 5 C 1.53000 * 109.47003 * 269.99485 * 4 3 2 6 6 C 1.53007 * 109.46901 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.46774 * 180.02562 * 6 5 4 8 8 C 1.34770 * 119.99531 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00606 * 359.97438 * 8 7 6 10 10 C 1.50707 * 119.99898 * 180.02562 * 8 7 6 11 11 S 1.80992 * 109.47489 * 180.02562 * 10 8 7 12 12 C 1.76193 * 100.00298 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99887 * 359.97438 * 12 11 10 14 14 C 1.38800 * 120.00414 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00509 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99631 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47459 * 89.99973 * 16 14 12 18 18 H 1.48503 * 109.47057 * 209.99940 * 16 14 12 19 19 H 1.48504 * 109.46865 * 329.99523 * 16 14 12 20 20 C 1.38413 * 119.99592 * 89.99818 * 3 2 1 21 21 N 1.32507 * 119.21392 * 180.02562 * 20 3 2 22 22 C 1.32258 * 120.74103 * 179.97438 * 21 20 3 23 23 C 1.38627 * 119.19174 * 0.02562 * 22 21 20 24 24 C 1.38583 * 118.56118 * 359.97438 * 23 22 21 25 25 C 1.50706 * 120.39905 * 180.02562 * 24 23 22 26 26 N 1.32280 * 119.19846 * 0.27668 * 24 23 22 27 27 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47368 * 299.99588 * 1 2 3 29 29 H 1.09001 * 109.46897 * 60.00375 * 1 2 3 30 30 H 1.08997 * 109.47368 * 240.00412 * 2 1 3 31 31 H 1.08995 * 109.47471 * 120.00313 * 2 1 3 32 32 H 1.09005 * 109.47199 * 29.99853 * 4 3 2 33 33 H 1.09001 * 109.47012 * 149.99202 * 4 3 2 34 34 H 1.09000 * 109.47008 * 300.00057 * 5 4 3 35 35 H 1.08997 * 109.47029 * 60.00162 * 5 4 3 36 36 H 1.09000 * 109.47139 * 299.99736 * 6 5 4 37 37 H 1.08997 * 109.47343 * 60.00113 * 6 5 4 38 38 H 0.96998 * 119.99997 * 0.02562 * 7 6 5 39 39 H 1.09000 * 109.46696 * 299.99912 * 10 8 7 40 40 H 1.08997 * 109.47102 * 59.99870 * 10 8 7 41 41 H 0.96992 * 120.00240 * 180.02562 * 15 14 12 42 42 H 1.07995 * 120.40771 * 180.02562 * 22 21 20 43 43 H 1.08007 * 120.71910 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47015 * 90.00484 * 25 24 23 45 45 H 1.09000 * 109.46646 * 209.99636 * 25 24 23 46 46 H 1.09000 * 109.47248 * 330.00354 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7103 6 6 3.9626 2.5534 -3.0350 7 7 5.3461 2.3227 -3.4582 8 6 5.7990 2.8652 -4.6058 9 8 5.0613 3.5440 -5.2883 10 6 7.2220 2.6275 -5.0415 11 16 7.5240 3.4815 -6.6084 12 6 9.2107 3.0468 -6.8739 13 1 9.7272 2.4250 -6.1576 14 6 9.8756 3.5033 -8.0035 15 7 11.1358 3.1789 -8.2015 16 14 8.9824 4.5793 -9.2420 17 1 9.1509 6.0070 -8.8700 18 1 9.5485 4.3504 -10.5957 19 1 7.5376 4.2356 -9.2451 20 6 2.2490 2.0337 1.1987 21 7 2.6902 3.2830 1.1807 22 6 2.9202 3.9351 2.3081 23 6 2.6946 3.2956 3.5172 24 6 2.2332 1.9890 3.4996 25 6 1.9735 1.2546 4.7898 26 7 2.0282 1.3926 2.3369 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 4.3883 2.2157 -0.9506 35 1 3.8745 0.7624 -1.8407 36 1 3.2819 2.1696 -3.7949 37 1 3.7958 3.6225 -2.9043 38 1 5.9359 1.7790 -2.9129 39 1 7.9034 3.0110 -4.2820 40 1 7.3882 1.5583 -5.1721 41 1 11.6006 3.4982 -8.9907 42 1 3.2793 4.9534 2.2870 43 1 2.8738 3.8050 4.4526 44 1 0.9418 1.4197 5.1005 45 1 2.1417 0.1880 4.6408 46 1 2.6489 1.6249 5.5610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095829655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:54 Heat of formation + Delta-G solvation = -10.488222 kcal Electronic energy + Delta-G solvation = -25533.476922 eV Core-core repulsion = 21776.583866 eV Total energy + Delta-G solvation = -3756.893056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.91071 -40.65907 -38.61454 -36.37142 -35.22015 -34.67611 -33.54012 -32.90811 -31.36979 -30.03033 -29.07933 -27.87305 -26.39757 -25.11133 -23.52342 -23.21496 -22.02515 -21.38728 -19.87427 -18.61308 -18.28545 -17.84016 -17.29690 -17.04779 -16.88182 -16.42833 -16.35788 -15.93568 -15.76364 -15.54892 -15.25469 -14.93041 -14.67677 -14.63030 -14.32688 -14.02744 -13.85446 -13.64675 -13.38125 -13.33021 -13.13873 -13.08546 -12.99267 -12.86344 -12.66773 -12.51789 -11.93796 -11.86476 -11.82541 -11.78242 -11.49709 -11.17327 -11.10166 -10.90358 -10.54315 -10.14615 -9.99525 -9.00070 -8.85106 -8.51753 -6.22774 0.26731 0.31104 0.98530 1.31621 1.46542 1.54658 1.55905 1.69084 2.23583 2.28231 2.71682 2.86394 2.96830 3.23832 3.55695 3.77993 3.82594 3.94178 4.03042 4.14879 4.19259 4.21900 4.33304 4.39590 4.42886 4.46126 4.48568 4.55169 4.62154 4.70300 4.76850 4.79570 4.84902 4.95503 4.99495 5.08824 5.13179 5.17897 5.31874 5.40606 5.53012 5.70399 5.94772 6.02178 6.11002 6.44910 6.51870 6.93298 7.17807 7.38278 8.60609 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.001741 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.074301 B =16074.736736 C =16605.941195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 N -0.585 5.585 4 C 0.139 3.861 5 C -0.125 4.125 6 C 0.128 3.872 7 N -0.713 5.713 8 C 0.535 3.465 9 O -0.563 6.563 10 C -0.112 4.112 11 S -0.175 6.175 12 C -0.530 4.530 13 H 0.062 0.938 14 C 0.045 3.955 15 N -0.917 5.917 16 Si 0.915 3.085 17 H -0.262 1.262 18 H -0.258 1.258 19 H -0.237 1.237 20 C 0.548 3.452 21 N -0.595 5.595 22 C 0.179 3.821 23 C -0.292 4.292 24 C 0.198 3.802 25 C -0.101 4.101 26 N -0.588 5.588 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.277 0.723 42 H 0.189 0.811 43 H 0.170 0.830 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 -6.043 28.495 37.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.004 3.996 3 N -0.301 5.301 4 C 0.015 3.985 5 C -0.165 4.165 6 C 0.004 3.996 7 N -0.367 5.367 8 C 0.320 3.680 9 O -0.441 6.441 10 C -0.263 4.263 11 S 0.052 5.948 12 C -0.678 4.678 13 H 0.080 0.920 14 C -0.160 4.160 15 N -0.554 5.554 16 Si 0.737 3.263 17 H -0.187 1.187 18 H -0.183 1.183 19 H -0.160 1.160 20 C 0.192 3.808 21 N -0.318 5.318 22 C 0.012 3.988 23 C -0.317 4.317 24 C 0.051 3.949 25 C -0.158 4.158 26 N -0.312 5.312 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.251 0.749 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.205 0.795 43 H 0.187 0.813 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.312 -5.510 26.246 36.198 hybrid contribution 1.663 -0.085 1.069 1.979 sum -22.649 -5.594 27.315 35.922 Atomic orbital electron populations 1.22067 0.95627 1.02760 1.01190 1.21515 0.94474 0.80038 1.03600 1.46330 1.68472 1.14049 1.01221 1.21288 0.95247 0.98368 0.83619 1.21977 0.98185 1.01312 0.94988 1.21245 0.81843 1.00464 0.96081 1.45749 1.14460 1.53416 1.23029 1.19939 0.88208 0.78772 0.81066 1.90686 1.58584 1.39949 1.54885 1.23277 0.96872 1.05656 1.00500 1.84693 1.14034 1.69376 1.26711 1.22468 0.95910 1.37517 1.11900 0.91993 1.25573 0.95083 0.96457 0.98887 1.70013 1.10732 1.45435 1.29266 0.85860 0.81282 0.79909 0.79271 1.18704 1.18259 1.16048 1.19559 0.88367 0.85962 0.86867 1.67958 1.21697 1.08908 1.33258 1.23464 0.88606 0.99941 0.86742 1.22689 1.09996 0.97444 1.01543 1.22053 0.87428 0.91773 0.93686 1.20849 1.04100 1.00372 0.90522 1.67764 1.25919 1.39495 0.98047 0.90060 0.94366 0.92601 0.88764 0.90435 0.88412 0.90341 0.92000 0.89998 0.91262 0.92302 0.74852 0.87016 0.86757 0.91354 0.79463 0.81253 0.88778 0.90584 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.24 71.98 0.74 -1.14 16 2 C 0.13 1.64 6.13 86.38 0.53 2.17 16 3 N -0.58 -9.90 2.57 -710.84 -1.83 -11.73 16 4 C 0.14 2.10 5.41 86.38 0.47 2.57 16 5 C -0.13 -1.93 5.65 30.60 0.17 -1.75 16 6 C 0.13 2.62 5.67 86.38 0.49 3.11 16 7 N -0.71 -17.10 5.56 -463.05 -2.57 -19.67 16 8 C 0.53 18.58 7.85 87.66 0.69 19.26 16 9 O -0.56 -24.26 15.86 -3.01 -0.05 -24.31 16 10 C -0.11 -4.26 6.16 71.24 0.44 -3.83 16 11 S -0.17 -8.91 18.55 -56.49 -1.05 -9.96 16 12 C -0.53 -31.13 10.04 67.95 0.68 -30.45 16 13 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 14 C 0.05 2.68 5.50 84.86 0.47 3.15 16 15 N -0.92 -56.06 13.97 21.65 0.30 -55.76 16 16 Si 0.91 45.27 27.74 68.60 1.90 47.17 16 17 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 20 C 0.55 11.34 8.17 261.48 2.14 13.48 16 21 N -0.59 -12.30 9.11 -197.98 -1.80 -14.11 16 22 C 0.18 2.72 11.30 84.72 0.96 3.68 16 23 C -0.29 -3.60 9.85 22.45 0.22 -3.38 16 24 C 0.20 2.93 6.82 42.58 0.29 3.22 16 25 C -0.10 -0.75 10.22 71.24 0.73 -0.02 16 26 N -0.59 -11.50 9.05 -186.04 -1.68 -13.18 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.88 8.07 -2.39 -0.02 0.86 16 31 H 0.08 1.16 7.33 -2.39 -0.02 1.14 16 32 H 0.10 1.13 8.07 -2.38 -0.02 1.12 16 33 H 0.08 1.42 7.33 -2.39 -0.02 1.41 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.41 7.50 8.47 -92.71 -0.79 6.71 16 39 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 40 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 41 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 44 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.10 0.31 8.09 -2.39 -0.02 0.29 16 Total: -1.00 -79.42 401.76 2.38 -77.04 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.15 Total: 14.44 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 9.01 Total: 10.08 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -7.59 Total: -114.45 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.31 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -79.42 2.38 -77.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095829655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.549 kcal (2) G-P(sol) polarization free energy of solvation -79.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds