Wall clock time and date at job start Tue Mar 31 2020 21:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47483 * 2 1 4 4 C 1.50702 * 109.46807 * 119.99671 * 2 1 3 5 5 N 1.31781 * 119.08607 * 299.99945 * 4 2 1 6 6 C 1.32554 * 121.01248 * 179.97438 * 5 4 2 7 7 C 1.38118 * 119.19587 * 0.02562 * 6 5 4 8 8 C 1.39622 * 118.33599 * 359.97438 * 7 6 5 9 9 N 1.38540 * 120.53238 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99962 * 359.97438 * 9 8 7 11 11 H 1.09002 * 109.47232 * 34.99326 * 10 9 8 12 12 C 1.53006 * 109.46910 * 274.99518 * 10 9 8 13 13 C 1.52992 * 109.47243 * 154.99811 * 10 9 8 14 14 N 1.46499 * 109.47115 * 304.99581 * 13 10 9 15 15 C 1.34783 * 120.00357 * 180.02562 * 14 13 10 16 16 O 1.21273 * 119.99651 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99895 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.46817 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00031 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99744 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00092 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99503 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47386 * 89.99751 * 23 21 19 25 25 H 1.48498 * 109.47454 * 209.99921 * 23 21 19 26 26 H 1.48511 * 109.47238 * 329.99777 * 23 21 19 27 27 N 1.31753 * 119.07978 * 119.98112 * 4 2 1 28 28 H 1.08997 * 109.47332 * 300.00315 * 1 2 3 29 29 H 1.09004 * 109.46686 * 59.99896 * 1 2 3 30 30 H 1.08997 * 109.47001 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47332 * 239.99685 * 2 1 3 32 32 H 1.08998 * 109.47495 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46792 * 300.00045 * 3 2 1 34 34 H 1.09007 * 109.47191 * 59.99372 * 3 2 1 35 35 H 1.07997 * 120.40177 * 179.72921 * 6 5 4 36 36 H 1.08003 * 120.82832 * 179.97438 * 7 6 5 37 37 H 0.96999 * 120.00408 * 179.97438 * 9 8 7 38 38 H 1.08994 * 109.46917 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.47016 * 299.99940 * 12 10 9 40 40 H 1.08996 * 109.46979 * 59.99763 * 12 10 9 41 41 H 1.08998 * 109.47999 * 64.99700 * 13 10 9 42 42 H 1.09004 * 109.47162 * 184.99777 * 13 10 9 43 43 H 0.97000 * 119.99968 * 0.02562 * 14 13 10 44 44 H 1.08999 * 109.47253 * 299.99377 * 17 15 14 45 45 H 1.08994 * 109.47212 * 59.99766 * 17 15 14 46 46 H 0.97005 * 119.99715 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7029 -0.2445 2.4185 6 6 2.1230 -0.8396 3.5259 7 6 2.9183 -1.9644 3.4263 8 6 3.2487 -2.4317 2.1527 9 7 4.0432 -3.5563 1.9999 10 6 4.5443 -4.2650 3.1801 11 1 3.7961 -4.2269 3.9717 12 6 5.8341 -3.5998 3.6649 13 6 4.8284 -5.7237 2.8165 14 7 3.6239 -6.3269 2.2407 15 6 3.6388 -7.6151 1.8443 16 8 4.6494 -8.2746 1.9639 17 6 2.3999 -8.2353 1.2515 18 16 2.7354 -9.9616 0.8229 19 6 1.1656 -10.4256 0.1710 20 1 0.3614 -9.7056 0.1354 21 6 0.9622 -11.7169 -0.2959 22 7 1.9422 -12.5945 -0.2520 23 14 -0.7022 -12.2090 -0.9864 24 1 -0.7307 -11.9425 -2.4470 25 1 -0.9310 -13.6559 -0.7428 26 1 -1.7683 -11.4199 -0.3183 27 7 2.7882 -1.7801 1.0887 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.8507 -0.4468 4.4944 36 1 3.2757 -2.4698 4.3113 37 1 4.2677 -3.8745 1.1115 38 1 6.2072 -4.1274 4.5427 39 1 6.5824 -3.6380 2.8732 40 1 5.6318 -2.5606 3.9238 41 1 5.6390 -5.7658 2.0891 42 1 5.1162 -6.2723 3.7134 43 1 2.8157 -5.7993 2.1447 44 1 1.5888 -8.1929 1.9784 45 1 2.1127 -7.6870 0.3544 46 1 1.8002 -13.4968 -0.5787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097675508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:03 Heat of formation + Delta-G solvation = -0.732744 kcal Electronic energy + Delta-G solvation = -25919.437572 eV Core-core repulsion = 22162.967545 eV Total energy + Delta-G solvation = -3756.470027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32320 -39.48497 -37.91586 -35.73511 -34.46386 -33.29947 -32.45019 -31.52088 -29.94850 -29.44383 -27.43034 -26.13477 -25.42253 -24.89371 -23.97759 -21.95650 -20.54324 -20.41711 -18.42786 -17.82154 -17.75618 -16.38014 -16.28898 -16.04272 -15.57523 -15.35179 -15.06715 -14.88585 -14.82105 -14.41174 -14.13601 -13.90590 -13.68210 -13.53279 -13.17454 -13.06279 -13.00802 -12.61766 -12.45544 -12.36142 -12.08261 -11.86439 -11.65050 -11.47540 -11.36360 -11.19503 -11.07956 -11.04524 -10.77983 -10.76742 -10.06601 -9.84361 -9.50993 -9.41304 -9.10231 -9.02894 -8.50880 -8.27485 -6.53075 -6.23916 -3.94763 0.79489 1.14054 2.51797 2.96100 3.00874 3.21235 3.26222 3.30099 3.60582 3.64705 3.74985 4.07847 4.18240 4.21152 4.40750 4.54818 4.70609 4.71877 4.86695 4.88561 4.96991 5.07224 5.11412 5.17505 5.24297 5.27084 5.37202 5.38071 5.41435 5.48974 5.54960 5.58092 5.65321 5.69285 5.74699 5.84076 5.94060 5.95467 6.07469 6.09944 6.43153 6.48560 6.92245 7.23097 7.56272 7.58298 8.06819 8.33167 8.50477 9.21577 10.83518 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.002290 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.383019 B =12225.024380 C =14143.947119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 C -0.138 4.138 4 C 0.368 3.632 5 N -0.557 5.557 6 C 0.177 3.823 7 C -0.302 4.302 8 C 0.443 3.557 9 N -0.706 5.706 10 C 0.138 3.862 11 H 0.092 0.908 12 C -0.167 4.167 13 C 0.114 3.886 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.576 5.576 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.411 0.589 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.399 0.601 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 28.076 7.496 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.048 4.048 3 C -0.197 4.197 4 C 0.099 3.901 5 N -0.276 5.276 6 C 0.014 3.986 7 C -0.330 4.330 8 C 0.199 3.801 9 N -0.339 5.339 10 C 0.033 3.967 11 H 0.110 0.890 12 C -0.226 4.226 13 C -0.011 4.011 14 N -0.396 5.396 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 N -0.299 5.299 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.181 0.819 36 H 0.159 0.841 37 H 0.248 0.752 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.233 0.767 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.760 27.112 7.081 28.272 hybrid contribution -2.093 -0.022 -0.104 2.096 sum 1.666 27.090 6.977 28.023 Atomic orbital electron populations 1.21776 0.93006 1.02241 1.02747 1.19969 0.96589 0.95709 0.92558 1.21770 1.00835 0.94286 1.02762 1.22815 0.87243 0.86856 0.93157 1.68172 1.26821 1.34134 0.98455 1.22882 0.88759 0.89513 0.97397 1.22174 1.09620 1.03523 0.97655 1.18516 0.86219 0.86064 0.89331 1.44677 1.52596 1.26815 1.09832 1.21370 0.96985 0.90587 0.87781 0.89040 1.22226 0.96817 1.01272 1.02286 1.21580 0.88892 0.90429 1.00185 1.45994 1.14757 1.12716 1.66106 1.20325 0.89986 0.80724 0.77019 1.90709 1.33762 1.61085 1.53393 1.23528 0.97854 1.05829 1.03217 1.85376 1.18906 0.98791 1.80185 1.22862 0.97913 0.99900 1.47720 0.90939 1.24995 0.97954 0.95341 0.95300 1.70016 1.31579 1.04745 1.43936 0.86161 0.82237 0.77829 0.79237 1.20238 1.20723 1.19690 1.67795 1.17496 1.11634 1.33002 0.91426 0.91698 0.92736 0.88787 0.92946 0.91715 0.91426 0.81934 0.84124 0.75204 0.90663 0.91538 0.91714 0.90729 0.89636 0.76660 0.89256 0.89222 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.09 37.16 0.34 -0.75 16 2 C -0.03 -0.24 3.25 -91.77 -0.30 -0.54 16 3 C -0.14 -1.01 9.09 37.16 0.34 -0.67 16 4 C 0.37 3.98 6.34 -157.24 -1.00 2.98 16 5 N -0.56 -5.75 9.80 -10.81 -0.11 -5.85 16 6 C 0.18 1.48 11.29 -17.28 -0.20 1.28 16 7 C -0.30 -2.46 8.93 -39.11 -0.35 -2.81 16 8 C 0.44 4.36 7.69 -154.78 -1.19 3.17 16 9 N -0.71 -5.85 4.67 -53.78 -0.25 -6.10 16 10 C 0.14 0.94 2.43 -67.93 -0.17 0.77 16 11 H 0.09 0.55 6.51 -51.93 -0.34 0.22 16 12 C -0.17 -0.94 9.46 37.16 0.35 -0.58 16 13 C 0.11 1.09 5.23 -4.05 -0.02 1.07 16 14 N -0.74 -9.11 5.39 -60.30 -0.32 -9.44 16 15 C 0.53 9.57 7.85 -10.98 -0.09 9.48 16 16 O -0.52 -11.27 15.86 5.56 0.09 -11.18 16 17 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 N -0.58 -6.62 10.34 -9.97 -0.10 -6.72 16 28 H 0.07 0.55 8.01 -51.93 -0.42 0.14 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.52 8.01 -51.93 -0.42 0.10 16 35 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 0.83 6.31 -52.48 -0.33 0.50 16 37 H 0.41 3.69 8.73 -40.82 -0.36 3.33 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.37 7.77 -51.93 -0.40 -0.04 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.40 4.25 8.14 -40.82 -0.33 3.92 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -35.15 399.68 -10.24 -45.39 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.21 Total: 3.07 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.86 Total: -2.42 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.05 Total: -53.49 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.15 -10.24 -45.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097675508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.661 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds