Wall clock time and date at job start Tue Mar 31 2020 21:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47483 * 2 1 4 4 C 1.50702 * 109.46807 * 119.99671 * 2 1 3 5 5 N 1.31781 * 119.08607 * 299.99945 * 4 2 1 6 6 C 1.32554 * 121.01248 * 179.97438 * 5 4 2 7 7 C 1.38118 * 119.19587 * 0.02562 * 6 5 4 8 8 C 1.39622 * 118.33599 * 359.97438 * 7 6 5 9 9 N 1.38540 * 120.53238 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99962 * 359.97438 * 9 8 7 11 11 H 1.09002 * 109.47232 * 34.99326 * 10 9 8 12 12 C 1.53006 * 109.46910 * 274.99518 * 10 9 8 13 13 C 1.52992 * 109.47243 * 154.99811 * 10 9 8 14 14 N 1.46499 * 109.47115 * 304.99581 * 13 10 9 15 15 C 1.34783 * 120.00357 * 180.02562 * 14 13 10 16 16 O 1.21273 * 119.99651 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99895 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.46817 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00031 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99744 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00092 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99503 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47386 * 89.99751 * 23 21 19 25 25 H 1.48498 * 109.47454 * 209.99921 * 23 21 19 26 26 H 1.48511 * 109.47238 * 329.99777 * 23 21 19 27 27 N 1.31753 * 119.07978 * 119.98112 * 4 2 1 28 28 H 1.08997 * 109.47332 * 300.00315 * 1 2 3 29 29 H 1.09004 * 109.46686 * 59.99896 * 1 2 3 30 30 H 1.08997 * 109.47001 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47332 * 239.99685 * 2 1 3 32 32 H 1.08998 * 109.47495 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46792 * 300.00045 * 3 2 1 34 34 H 1.09007 * 109.47191 * 59.99372 * 3 2 1 35 35 H 1.07997 * 120.40177 * 179.72921 * 6 5 4 36 36 H 1.08003 * 120.82832 * 179.97438 * 7 6 5 37 37 H 0.96999 * 120.00408 * 179.97438 * 9 8 7 38 38 H 1.08994 * 109.46917 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.47016 * 299.99940 * 12 10 9 40 40 H 1.08996 * 109.46979 * 59.99763 * 12 10 9 41 41 H 1.08998 * 109.47999 * 64.99700 * 13 10 9 42 42 H 1.09004 * 109.47162 * 184.99777 * 13 10 9 43 43 H 0.97000 * 119.99968 * 0.02562 * 14 13 10 44 44 H 1.08999 * 109.47253 * 299.99377 * 17 15 14 45 45 H 1.08994 * 109.47212 * 59.99766 * 17 15 14 46 46 H 0.97005 * 119.99715 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7029 -0.2445 2.4185 6 6 2.1230 -0.8396 3.5259 7 6 2.9183 -1.9644 3.4263 8 6 3.2487 -2.4317 2.1527 9 7 4.0432 -3.5563 1.9999 10 6 4.5443 -4.2650 3.1801 11 1 3.7961 -4.2269 3.9717 12 6 5.8341 -3.5998 3.6649 13 6 4.8284 -5.7237 2.8165 14 7 3.6239 -6.3269 2.2407 15 6 3.6388 -7.6151 1.8443 16 8 4.6494 -8.2746 1.9639 17 6 2.3999 -8.2353 1.2515 18 16 2.7354 -9.9616 0.8229 19 6 1.1656 -10.4256 0.1710 20 1 0.3614 -9.7056 0.1354 21 6 0.9622 -11.7169 -0.2959 22 7 1.9422 -12.5945 -0.2520 23 14 -0.7022 -12.2090 -0.9864 24 1 -0.7307 -11.9425 -2.4470 25 1 -0.9310 -13.6559 -0.7428 26 1 -1.7683 -11.4199 -0.3183 27 7 2.7882 -1.7801 1.0887 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.8507 -0.4468 4.4944 36 1 3.2757 -2.4698 4.3113 37 1 4.2677 -3.8745 1.1115 38 1 6.2072 -4.1274 4.5427 39 1 6.5824 -3.6380 2.8732 40 1 5.6318 -2.5606 3.9238 41 1 5.6390 -5.7658 2.0891 42 1 5.1162 -6.2723 3.7134 43 1 2.8157 -5.7993 2.1447 44 1 1.5888 -8.1929 1.9784 45 1 2.1127 -7.6870 0.3544 46 1 1.8002 -13.4968 -0.5787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097675508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:03 Heat of formation + Delta-G solvation = -24.621336 kcal Electronic energy + Delta-G solvation = -25920.473459 eV Core-core repulsion = 22162.967545 eV Total energy + Delta-G solvation = -3757.505914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.00597 -40.74929 -38.76330 -36.45101 -35.37241 -34.60847 -34.18875 -32.30230 -30.93219 -30.47316 -28.02380 -27.76358 -26.85522 -25.56243 -24.65856 -22.62030 -21.78847 -21.18151 -19.90800 -19.01108 -18.45116 -17.80040 -17.38724 -16.90044 -16.85096 -16.42635 -16.13110 -16.01023 -15.89023 -15.65027 -15.06385 -14.82780 -14.59765 -14.46091 -14.29634 -14.22380 -13.84713 -13.70183 -13.30171 -13.19112 -12.99749 -12.91153 -12.90522 -12.68807 -12.63545 -12.30407 -12.09986 -12.01621 -11.83294 -11.74697 -11.42097 -11.16503 -11.02903 -10.73430 -10.31458 -10.20755 -10.12977 -9.16048 -8.69015 -8.37049 -6.15028 0.12551 0.45791 1.24206 1.40683 1.44465 1.55058 1.55805 1.86683 2.22832 2.26420 2.93132 2.97129 3.10442 3.28899 3.43939 3.54203 3.78768 3.90227 3.97231 4.10990 4.16241 4.23902 4.24325 4.24924 4.42253 4.46585 4.53120 4.62853 4.71566 4.75306 4.79824 4.83773 4.87607 4.93712 4.97351 5.11925 5.24163 5.32256 5.34416 5.36414 5.39538 5.44824 5.83045 6.17439 6.23685 6.38070 6.54053 7.04414 7.16095 7.37035 8.72104 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.002290 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.383019 B =12225.024380 C =14143.947119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.031 4.031 3 C -0.130 4.130 4 C 0.352 3.648 5 N -0.571 5.571 6 C 0.168 3.832 7 C -0.297 4.297 8 C 0.428 3.572 9 N -0.705 5.705 10 C 0.150 3.850 11 H 0.109 0.891 12 C -0.162 4.162 13 C 0.113 3.887 14 N -0.714 5.714 15 C 0.537 3.463 16 O -0.560 6.560 17 C -0.132 4.132 18 S -0.146 6.146 19 C -0.548 4.548 20 H 0.080 0.920 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.259 1.259 27 N -0.603 5.603 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.194 0.806 36 H 0.167 0.833 37 H 0.406 0.594 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.411 0.589 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 29.972 8.426 31.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 C -0.188 4.188 4 C 0.083 3.917 5 N -0.290 5.290 6 C 0.007 3.993 7 C -0.324 4.324 8 C 0.184 3.816 9 N -0.338 5.338 10 C 0.045 3.955 11 H 0.127 0.873 12 C -0.221 4.221 13 C -0.011 4.011 14 N -0.368 5.368 15 C 0.322 3.678 16 O -0.438 6.438 17 C -0.283 4.283 18 S 0.082 5.918 19 C -0.696 4.696 20 H 0.098 0.902 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.183 1.183 27 N -0.327 5.327 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.211 0.789 36 H 0.184 0.816 37 H 0.242 0.758 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.247 0.753 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.392 29.067 8.040 30.253 hybrid contribution -1.610 -0.488 -0.329 1.714 sum 0.782 28.580 7.710 29.612 Atomic orbital electron populations 1.21720 0.92405 1.01548 1.03383 1.20053 0.97057 0.96257 0.91797 1.21707 1.00262 0.93498 1.03381 1.23149 0.87504 0.87047 0.93999 1.68211 1.27327 1.34655 0.98854 1.23473 0.88297 0.89483 0.98072 1.22429 1.08953 1.03316 0.97732 1.18782 0.86551 0.86412 0.89841 1.44735 1.52419 1.26620 1.09993 1.21367 0.98183 0.88405 0.87517 0.87326 1.22192 0.95769 1.01523 1.02595 1.21778 0.87318 0.92068 0.99950 1.45724 1.16252 1.10684 1.64107 1.19957 0.88526 0.82176 0.77102 1.90700 1.34902 1.62605 1.55629 1.23375 0.99597 1.00867 1.04479 1.85508 1.20210 1.05309 1.80821 1.23190 0.98058 1.00537 1.47788 0.90156 1.26116 1.02338 0.95225 0.95420 1.70173 1.34143 1.05246 1.45056 0.84964 0.76866 0.77618 0.78605 1.19338 1.20134 1.18315 1.67782 1.18402 1.12380 1.34181 0.91843 0.89941 0.94018 0.89353 0.93704 0.89954 0.91868 0.78881 0.81602 0.75799 0.89159 0.92236 0.91226 0.91366 0.89171 0.75250 0.87481 0.87742 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.09 71.98 0.65 -1.32 16 2 C -0.03 -0.53 3.25 -11.54 -0.04 -0.57 16 3 C -0.13 -1.79 9.09 71.98 0.65 -1.14 16 4 C 0.35 7.41 6.34 138.77 0.88 8.29 16 5 N -0.57 -11.12 9.80 -188.11 -1.84 -12.96 16 6 C 0.17 2.43 11.29 84.56 0.95 3.39 16 7 C -0.30 -4.08 8.93 22.58 0.20 -3.87 16 8 C 0.43 7.74 7.69 133.16 1.02 8.77 16 9 N -0.71 -10.46 4.67 -324.06 -1.51 -11.97 16 10 C 0.15 1.65 2.43 44.99 0.11 1.76 16 11 H 0.11 0.90 6.51 -2.39 -0.02 0.88 16 12 C -0.16 -1.39 9.46 71.98 0.68 -0.71 16 13 C 0.11 1.96 5.23 86.38 0.45 2.41 16 14 N -0.71 -16.33 5.39 -463.08 -2.50 -18.83 16 15 C 0.54 18.93 7.85 87.65 0.69 19.62 16 16 O -0.56 -24.79 15.86 -3.01 -0.05 -24.84 16 17 C -0.13 -5.20 6.16 71.23 0.44 -4.76 16 18 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 19 C -0.55 -31.39 9.50 67.96 0.65 -30.74 16 20 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -55.81 13.22 21.65 0.29 -55.52 16 23 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 N -0.60 -13.52 10.34 -185.44 -1.92 -15.44 16 28 H 0.06 0.99 8.01 -2.39 -0.02 0.97 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 1.55 8.09 -2.39 -0.02 1.54 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.92 8.01 -2.38 -0.02 0.90 16 35 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.17 1.31 6.31 -2.91 -0.02 1.29 16 37 H 0.41 6.86 8.73 -92.71 -0.81 6.05 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.58 7.77 -2.39 -0.02 0.56 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.41 7.76 8.14 -92.71 -0.75 7.00 16 44 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 45 H 0.10 3.80 8.14 -2.40 -0.02 3.78 16 46 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -78.73 399.68 0.58 -78.15 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.56 Total: 22.49 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 7.81 Total: 2.38 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -7.48 Total: -114.73 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -78.73 0.58 -78.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097675508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.527 kcal (2) G-P(sol) polarization free energy of solvation -78.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds