Wall clock time and date at job start Tue Mar 31 2020 21:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.38119 * 120.40121 * 84.72230 * 4 2 1 6 6 C 1.39629 * 118.33263 * 179.80646 * 5 4 2 7 7 N 1.38545 * 120.52886 * 180.22026 * 6 5 4 8 8 C 1.46507 * 119.99972 * 0.25207 * 7 6 5 9 9 H 1.08998 * 109.47073 * 325.00038 * 8 7 6 10 10 C 1.53001 * 109.46863 * 84.99867 * 8 7 6 11 11 C 1.52994 * 109.46898 * 204.99895 * 8 7 6 12 12 N 1.46501 * 109.47174 * 55.00146 * 11 8 7 13 13 C 1.34773 * 120.00205 * 179.97438 * 12 11 8 14 14 O 1.21283 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00146 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47081 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99766 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00334 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99954 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99880 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47260 * 90.00006 * 21 19 17 23 23 H 1.48505 * 109.47345 * 210.00058 * 21 19 17 24 24 H 1.48504 * 109.47228 * 330.00082 * 21 19 17 25 25 N 1.32993 * 118.93756 * 0.46492 * 6 5 4 26 26 C 1.31752 * 120.68486 * 359.75603 * 25 6 5 27 27 N 1.31786 * 121.83346 * 0.02562 * 26 25 6 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.07995 * 120.83080 * 0.02679 * 5 4 2 36 36 H 0.96992 * 119.99806 * 180.24949 * 7 6 5 37 37 H 1.09006 * 109.46888 * 60.00066 * 10 8 7 38 38 H 1.08996 * 109.46640 * 179.97438 * 10 8 7 39 39 H 1.08990 * 109.47579 * 299.99994 * 10 8 7 40 40 H 1.09002 * 109.47086 * 174.99927 * 11 8 7 41 41 H 1.09002 * 109.47517 * 295.00273 * 11 8 7 42 42 H 0.97004 * 120.00258 * 0.02562 * 12 11 8 43 43 H 1.09002 * 109.46952 * 300.00065 * 15 13 12 44 44 H 1.08993 * 109.47260 * 60.00289 * 15 13 12 45 45 H 0.96997 * 119.99910 * 180.02562 * 20 19 17 46 46 H 1.07999 * 119.07656 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1620 -0.0308 -2.4259 6 6 2.6353 -0.7303 -3.5378 7 7 2.7874 -0.0923 -4.7582 8 6 2.4557 1.3288 -4.8882 9 1 1.6031 1.5627 -4.2507 10 6 3.6579 2.1740 -4.4624 11 6 2.1042 1.6392 -6.3445 12 7 1.0314 0.7460 -6.7889 13 6 0.5553 0.8382 -8.0464 14 8 1.0152 1.6604 -8.8102 15 6 -0.5487 -0.0803 -8.5034 16 16 -0.9655 0.2879 -10.2259 17 6 -2.2424 -0.8969 -10.4916 18 1 -2.5348 -1.5638 -9.6940 19 6 -2.8732 -0.9724 -11.7256 20 7 -2.5172 -0.1593 -12.6976 21 14 -4.2273 -2.2279 -12.0071 22 1 -5.5390 -1.6294 -11.6517 23 1 -4.2385 -2.6320 -13.4361 24 1 -3.9809 -3.4207 -11.1575 25 7 2.9333 -2.0199 -3.4078 26 6 2.7898 -2.6296 -2.2487 27 7 2.3497 -1.9964 -1.1800 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.9070 1.0161 -2.4979 36 1 3.1134 -0.5865 -5.5264 37 1 4.5106 1.9400 -5.0999 38 1 3.4113 3.2312 -4.5595 39 1 3.9084 1.9529 -3.4250 40 1 1.7720 2.6742 -6.4254 41 1 2.9839 1.4899 -6.9705 42 1 0.6632 0.0886 -6.1780 43 1 -0.2168 -1.1154 -8.4228 44 1 -1.4282 0.0691 -7.8773 45 1 -2.9583 -0.2118 -13.5599 46 1 3.0391 -3.6776 -2.1725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097675593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:14 Heat of formation + Delta-G solvation = -1.811441 kcal Electronic energy + Delta-G solvation = -26140.025158 eV Core-core repulsion = 22383.508356 eV Total energy + Delta-G solvation = -3756.516803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34959 -39.47000 -37.82968 -36.46315 -34.44191 -32.86357 -32.44903 -31.44055 -29.99223 -29.44551 -27.61337 -26.13030 -25.41907 -25.11882 -23.89616 -21.53770 -21.04780 -20.42253 -18.39772 -17.83102 -17.71630 -16.40575 -16.32892 -15.87847 -15.67087 -15.36345 -15.12182 -14.92743 -14.82153 -14.41123 -14.31552 -14.08540 -13.74776 -13.49964 -13.30636 -13.11208 -12.99997 -12.62029 -12.61328 -12.39581 -11.96802 -11.86585 -11.75025 -11.59647 -11.43780 -11.27561 -11.07942 -11.04500 -10.77841 -10.75423 -10.02888 -9.84288 -9.50844 -9.42307 -9.10193 -9.02841 -8.52118 -8.27436 -6.53006 -6.23865 -3.94720 0.80047 1.12082 2.54386 2.96288 3.01040 3.21180 3.26258 3.30260 3.61641 3.65609 3.74836 4.05654 4.18145 4.19707 4.40350 4.53747 4.56513 4.69554 4.70634 4.74136 4.97333 5.07276 5.11445 5.17352 5.19289 5.22600 5.25626 5.30046 5.37825 5.40325 5.45852 5.49072 5.60784 5.65427 5.74656 5.79242 5.82549 5.84231 6.01178 6.10031 6.40729 6.46960 6.93396 7.23432 7.56341 7.58363 8.05270 8.33217 8.50579 9.21641 10.83569 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.002193 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.929124 B =12766.452822 C =13656.687730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C -0.147 4.147 4 C 0.210 3.790 5 C -0.291 4.291 6 C 0.442 3.558 7 N -0.706 5.706 8 C 0.138 3.862 9 H 0.091 0.909 10 C -0.167 4.167 11 C 0.114 3.886 12 N -0.740 5.740 13 C 0.533 3.467 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.581 5.581 26 C 0.341 3.659 27 N -0.565 5.565 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.142 0.858 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.292 2.476 27.243 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.204 4.204 4 C 0.067 3.933 5 C -0.319 4.319 6 C 0.198 3.802 7 N -0.339 5.339 8 C 0.032 3.968 9 H 0.109 0.891 10 C -0.226 4.226 11 C -0.011 4.011 12 N -0.396 5.396 13 C 0.319 3.681 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 N -0.306 5.306 26 C 0.051 3.949 27 N -0.284 5.284 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.160 0.840 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 12.210 3.200 25.810 28.731 hybrid contribution -1.581 -1.508 0.511 2.244 sum 10.629 1.692 26.321 28.436 Atomic orbital electron populations 1.21793 0.93086 1.02588 1.02425 1.20101 0.96526 0.95487 0.94657 1.21905 1.01319 0.94662 1.02542 1.21317 0.88582 0.89416 0.93945 1.21992 1.13001 1.03117 0.93809 1.18537 0.86939 0.88308 0.86422 1.44665 1.70384 1.09868 1.08997 1.21365 0.98470 0.79813 0.97104 0.89143 1.22228 0.97949 1.00149 1.02311 1.21581 0.91561 0.95556 0.92382 1.45990 1.39589 1.39727 1.14248 1.20327 0.82963 0.84006 0.80769 1.90712 1.58781 1.36346 1.53100 1.23531 0.98696 1.01274 1.06927 1.85376 1.47263 1.49221 1.01395 1.22861 1.22504 1.21907 1.01118 0.90939 1.24994 0.97272 0.96392 0.94928 1.70014 1.40695 1.36208 1.03365 0.86162 0.81017 0.80639 0.77658 1.20254 1.20717 1.19682 1.67972 1.25043 1.08818 1.28724 1.24647 0.88397 0.99867 0.81993 1.68239 1.18028 1.09574 1.32515 0.92335 0.91566 0.92133 0.88905 0.91581 0.92370 0.92070 0.84022 0.75154 0.91492 0.90656 0.91722 0.89645 0.90705 0.76659 0.89216 0.89262 0.92160 0.78960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.18 37.16 0.34 -0.52 16 2 C -0.05 -0.32 3.26 -91.78 -0.30 -0.62 16 3 C -0.15 -0.72 8.64 37.15 0.32 -0.40 16 4 C 0.21 1.90 5.81 -82.33 -0.48 1.42 16 5 C -0.29 -2.48 8.03 -39.11 -0.31 -2.79 16 6 C 0.44 4.29 7.69 -154.77 -1.19 3.10 16 7 N -0.71 -5.79 4.67 -53.78 -0.25 -6.04 16 8 C 0.14 0.94 2.44 -67.93 -0.17 0.77 16 9 H 0.09 0.55 6.50 -51.93 -0.34 0.22 16 10 C -0.17 -0.93 9.46 37.16 0.35 -0.58 16 11 C 0.11 1.09 5.23 -4.04 -0.02 1.06 16 12 N -0.74 -9.04 5.39 -60.29 -0.32 -9.37 16 13 C 0.53 9.52 7.85 -10.98 -0.09 9.44 16 14 O -0.52 -11.22 15.86 5.55 0.09 -11.13 16 15 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 17 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 N -0.58 -6.38 10.47 -13.81 -0.14 -6.52 16 26 C 0.34 3.39 12.28 -92.20 -1.13 2.26 16 27 N -0.56 -5.87 10.37 -10.88 -0.11 -5.98 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.28 6.58 -51.93 -0.34 -0.06 16 35 H 0.14 0.93 4.72 -52.49 -0.25 0.69 16 36 H 0.41 3.63 8.73 -40.82 -0.36 3.28 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.36 7.80 -51.93 -0.41 -0.04 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.40 4.21 8.14 -40.82 -0.33 3.88 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.19 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -35.17 396.80 -10.58 -45.75 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.06 Total: 2.74 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.25 Total: -2.66 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.10 Total: -53.28 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.17 -10.58 -45.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097675593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.938 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds