Wall clock time and date at job start Tue Mar 31 2020 21:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.38119 * 120.40121 * 84.72230 * 4 2 1 6 6 C 1.39629 * 118.33263 * 179.80646 * 5 4 2 7 7 N 1.38545 * 120.52886 * 180.22026 * 6 5 4 8 8 C 1.46507 * 119.99972 * 0.25207 * 7 6 5 9 9 H 1.08998 * 109.47073 * 325.00038 * 8 7 6 10 10 C 1.53001 * 109.46863 * 84.99867 * 8 7 6 11 11 C 1.52994 * 109.46898 * 204.99895 * 8 7 6 12 12 N 1.46501 * 109.47174 * 55.00146 * 11 8 7 13 13 C 1.34773 * 120.00205 * 179.97438 * 12 11 8 14 14 O 1.21283 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00146 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47081 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99766 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00334 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99954 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99880 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47260 * 90.00006 * 21 19 17 23 23 H 1.48505 * 109.47345 * 210.00058 * 21 19 17 24 24 H 1.48504 * 109.47228 * 330.00082 * 21 19 17 25 25 N 1.32993 * 118.93756 * 0.46492 * 6 5 4 26 26 C 1.31752 * 120.68486 * 359.75603 * 25 6 5 27 27 N 1.31786 * 121.83346 * 0.02562 * 26 25 6 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.07995 * 120.83080 * 0.02679 * 5 4 2 36 36 H 0.96992 * 119.99806 * 180.24949 * 7 6 5 37 37 H 1.09006 * 109.46888 * 60.00066 * 10 8 7 38 38 H 1.08996 * 109.46640 * 179.97438 * 10 8 7 39 39 H 1.08990 * 109.47579 * 299.99994 * 10 8 7 40 40 H 1.09002 * 109.47086 * 174.99927 * 11 8 7 41 41 H 1.09002 * 109.47517 * 295.00273 * 11 8 7 42 42 H 0.97004 * 120.00258 * 0.02562 * 12 11 8 43 43 H 1.09002 * 109.46952 * 300.00065 * 15 13 12 44 44 H 1.08993 * 109.47260 * 60.00289 * 15 13 12 45 45 H 0.96997 * 119.99910 * 180.02562 * 20 19 17 46 46 H 1.07999 * 119.07656 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1620 -0.0308 -2.4259 6 6 2.6353 -0.7303 -3.5378 7 7 2.7874 -0.0923 -4.7582 8 6 2.4557 1.3288 -4.8882 9 1 1.6031 1.5627 -4.2507 10 6 3.6579 2.1740 -4.4624 11 6 2.1042 1.6392 -6.3445 12 7 1.0314 0.7460 -6.7889 13 6 0.5553 0.8382 -8.0464 14 8 1.0152 1.6604 -8.8102 15 6 -0.5487 -0.0803 -8.5034 16 16 -0.9655 0.2879 -10.2259 17 6 -2.2424 -0.8969 -10.4916 18 1 -2.5348 -1.5638 -9.6940 19 6 -2.8732 -0.9724 -11.7256 20 7 -2.5172 -0.1593 -12.6976 21 14 -4.2273 -2.2279 -12.0071 22 1 -5.5390 -1.6294 -11.6517 23 1 -4.2385 -2.6320 -13.4361 24 1 -3.9809 -3.4207 -11.1575 25 7 2.9333 -2.0199 -3.4078 26 6 2.7898 -2.6296 -2.2487 27 7 2.3497 -1.9964 -1.1800 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.9070 1.0161 -2.4979 36 1 3.1134 -0.5865 -5.5264 37 1 4.5106 1.9400 -5.0999 38 1 3.4113 3.2312 -4.5595 39 1 3.9084 1.9529 -3.4250 40 1 1.7720 2.6742 -6.4254 41 1 2.9839 1.4899 -6.9705 42 1 0.6632 0.0886 -6.1780 43 1 -0.2168 -1.1154 -8.4228 44 1 -1.4282 0.0691 -7.8773 45 1 -2.9583 -0.2118 -13.5599 46 1 3.0391 -3.6776 -2.1725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097675593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:13 Heat of formation + Delta-G solvation = -24.935723 kcal Electronic energy + Delta-G solvation = -26141.027902 eV Core-core repulsion = 22383.508356 eV Total energy + Delta-G solvation = -3757.519547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.03017 -40.73213 -38.66988 -37.03968 -35.46085 -34.60327 -33.69446 -32.17267 -30.95521 -30.49143 -28.02828 -27.75972 -26.84641 -25.75223 -24.57703 -22.21180 -21.76586 -21.59986 -19.89205 -18.99553 -18.38212 -17.79838 -17.43234 -16.89666 -16.75197 -16.40438 -16.13379 -16.05396 -15.86645 -15.72542 -14.97429 -14.89047 -14.74963 -14.56108 -14.28250 -14.21394 -13.81456 -13.78932 -13.29057 -13.18673 -13.01143 -12.91345 -12.89535 -12.64604 -12.44787 -12.30312 -12.16762 -11.96021 -11.88504 -11.74293 -11.37664 -11.16084 -11.01385 -10.69318 -10.30814 -10.19821 -10.14095 -9.18327 -8.68400 -8.36689 -6.14540 0.12393 0.41950 1.24702 1.40823 1.44784 1.55422 1.56861 1.88905 2.23486 2.27148 2.93921 2.97461 3.17035 3.29411 3.41273 3.52434 3.76839 3.90590 3.96875 4.06846 4.15886 4.17258 4.25190 4.25318 4.44137 4.47562 4.53722 4.60315 4.71698 4.73099 4.79766 4.82883 4.87418 4.96504 5.00009 5.17954 5.24888 5.32271 5.37058 5.37743 5.39955 5.43056 5.77589 6.17821 6.24574 6.39078 6.54327 7.04830 7.17150 7.35337 8.72445 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.002193 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.929124 B =12766.452822 C =13656.687730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C -0.143 4.143 4 C 0.198 3.802 5 C -0.288 4.288 6 C 0.430 3.570 7 N -0.704 5.704 8 C 0.149 3.851 9 H 0.106 0.894 10 C -0.163 4.163 11 C 0.113 3.887 12 N -0.713 5.713 13 C 0.537 3.463 14 O -0.560 6.560 15 C -0.132 4.132 16 S -0.146 6.146 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.997 3.003 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.260 1.260 25 N -0.605 5.605 26 C 0.330 3.670 27 N -0.583 5.583 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.163 0.837 36 H 0.407 0.593 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.411 0.589 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.272 0.728 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.740 2.380 29.430 31.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.200 4.200 4 C 0.057 3.943 5 C -0.315 4.315 6 C 0.187 3.813 7 N -0.337 5.337 8 C 0.044 3.956 9 H 0.124 0.876 10 C -0.222 4.222 11 C -0.011 4.011 12 N -0.368 5.368 13 C 0.322 3.678 14 O -0.438 6.438 15 C -0.283 4.283 16 S 0.082 5.918 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.819 3.181 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.184 1.184 25 N -0.330 5.330 26 C 0.040 3.960 27 N -0.302 5.302 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.180 0.820 36 H 0.244 0.756 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.248 0.752 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.671 3.105 28.062 30.551 hybrid contribution -1.321 -1.464 -0.042 1.972 sum 10.351 1.641 28.020 29.916 Atomic orbital electron populations 1.21774 0.92647 1.01857 1.03276 1.20168 0.96772 0.96313 0.93401 1.21891 1.01095 0.93450 1.03601 1.21781 0.88248 0.89235 0.95082 1.22159 1.12352 1.03918 0.93113 1.18750 0.87199 0.88277 0.87109 1.44721 1.70180 1.10256 1.08510 1.21366 0.99689 0.79310 0.95217 0.87595 1.22199 0.96936 1.00747 1.02271 1.21776 0.90175 0.95144 0.93987 1.45719 1.39142 1.39627 1.12263 1.19953 0.82517 0.83177 0.82113 1.90703 1.60204 1.38134 1.54758 1.23379 1.00434 1.02610 1.01903 1.85506 1.47927 1.50294 1.08113 1.23190 1.22644 1.21999 1.01721 0.90159 1.26110 0.99928 0.98543 0.94507 1.70171 1.42282 1.38191 1.03976 0.84969 0.77472 0.77865 0.77778 1.19214 1.20200 1.18412 1.67983 1.25991 1.09719 1.29282 1.25074 0.88277 1.00798 0.81806 1.68287 1.18675 1.10488 1.32799 0.92245 0.89930 0.93643 0.89393 0.90234 0.92699 0.91312 0.81988 0.75612 0.92070 0.89084 0.91310 0.89154 0.91255 0.75248 0.87742 0.87466 0.91939 0.77145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.18 71.98 0.66 -0.78 16 2 C -0.05 -0.55 3.26 -11.54 -0.04 -0.59 16 3 C -0.14 -1.04 8.64 71.98 0.62 -0.42 16 4 C 0.20 3.31 5.81 42.42 0.25 3.56 16 5 C -0.29 -4.30 8.03 22.58 0.18 -4.12 16 6 C 0.43 7.69 7.69 133.16 1.02 8.71 16 7 N -0.70 -10.24 4.67 -324.05 -1.51 -11.75 16 8 C 0.15 1.63 2.44 44.99 0.11 1.74 16 9 H 0.11 0.90 6.50 -2.39 -0.02 0.89 16 10 C -0.16 -1.37 9.46 71.98 0.68 -0.69 16 11 C 0.11 1.93 5.23 86.38 0.45 2.38 16 12 N -0.71 -16.10 5.39 -463.06 -2.49 -18.59 16 13 C 0.54 18.76 7.85 87.66 0.69 19.45 16 14 O -0.56 -24.59 15.86 -3.04 -0.05 -24.63 16 15 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 16 S -0.15 -8.02 20.57 -56.49 -1.16 -9.18 16 17 C -0.55 -31.31 9.50 67.95 0.65 -30.66 16 18 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 21 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 N -0.60 -12.79 10.47 -197.61 -2.07 -14.85 16 26 C 0.33 6.39 12.28 180.90 2.22 8.61 16 27 N -0.58 -11.71 10.37 -188.34 -1.95 -13.67 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.40 6.58 -2.39 -0.02 0.38 16 35 H 0.16 1.61 4.72 -2.91 -0.01 1.60 16 36 H 0.41 6.64 8.73 -92.71 -0.81 5.83 16 37 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.57 7.80 -2.39 -0.02 0.55 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.41 7.62 8.14 -92.71 -0.75 6.87 16 43 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 44 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -78.25 396.80 0.92 -77.33 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.56 Total: 21.34 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 8.40 Total: 3.73 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -7.74 Total: -114.31 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -78.25 0.92 -77.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097675593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.398 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds