Wall clock time and date at job start Tue Mar 31 2020 20:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38120 * 120.39929 * 84.99729 * 4 2 1 6 6 C 1.39620 * 118.33006 * 179.97438 * 5 4 2 7 7 N 1.38544 * 120.52753 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00252 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47257 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47634 * 64.99734 * 9 8 7 11 11 C 1.53001 * 109.47412 * 185.00138 * 9 8 7 12 12 N 1.46500 * 109.47298 * 304.99903 * 9 8 7 13 13 C 1.34773 * 120.00692 * 155.00038 * 12 9 8 14 14 O 1.21290 * 119.99509 * 0.02562 * 13 12 9 15 15 C 1.50695 * 120.00672 * 180.02562 * 13 12 9 16 16 S 1.81003 * 109.47268 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99679 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00183 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99377 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00228 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99442 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47171 * 90.00257 * 21 19 17 23 23 H 1.48503 * 109.47129 * 210.00476 * 21 19 17 24 24 H 1.48498 * 109.47363 * 330.00016 * 21 19 17 25 25 N 1.32986 * 118.94148 * 0.02562 * 6 5 4 26 26 C 1.31753 * 120.68830 * 359.97438 * 25 6 5 27 27 N 1.31791 * 121.82863 * 359.73649 * 26 25 6 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 35 35 H 1.07994 * 120.83386 * 359.96502 * 5 4 2 36 36 H 0.97006 * 119.99673 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47083 * 299.99689 * 8 7 6 38 38 H 1.09001 * 109.47190 * 60.00191 * 8 7 6 39 39 H 1.09000 * 109.47051 * 59.99239 * 11 9 8 40 40 H 1.08999 * 109.47275 * 179.97438 * 11 9 8 41 41 H 1.09005 * 109.46635 * 300.00016 * 11 9 8 42 42 H 0.97005 * 119.99904 * 334.99917 * 12 9 8 43 43 H 1.09000 * 109.46612 * 299.99931 * 15 13 12 44 44 H 1.08997 * 109.47149 * 59.99523 * 15 13 12 45 45 H 0.96999 * 119.99742 * 179.97438 * 20 19 17 46 46 H 1.07991 * 119.08682 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1673 -0.0293 -2.4245 6 6 2.6371 -0.7296 -3.5373 7 7 2.7904 -0.0913 -4.7573 8 6 2.4593 1.3299 -4.8872 9 6 2.7160 1.7840 -6.3255 10 1 2.0320 1.2660 -6.9977 11 6 2.4900 3.2935 -6.4318 12 7 4.0977 1.4698 -6.6976 13 6 4.4239 1.2969 -7.9938 14 8 3.5736 1.4019 -8.8523 15 6 5.8451 0.9731 -8.3765 16 16 5.9616 0.8017 -10.1746 17 6 7.6777 0.4362 -10.3365 18 1 8.3030 0.3795 -9.4577 19 6 8.2256 0.2201 -11.5933 20 7 7.4634 0.2887 -12.6642 21 14 10.0447 -0.1682 -11.7649 22 1 10.2457 -1.6380 -11.6979 23 1 10.5384 0.3400 -13.0700 24 1 10.7963 0.4849 -10.6632 25 7 2.9349 -2.0192 -3.4075 26 6 2.7908 -2.6292 -2.2486 27 7 2.3552 -1.9949 -1.1787 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 1.9157 1.0185 -2.4956 36 1 3.1170 -0.5854 -5.5256 37 1 1.4085 1.4821 -4.6406 38 1 3.0804 1.9114 -4.2059 39 1 3.1740 3.8115 -5.7596 40 1 2.6733 3.6171 -7.4564 41 1 1.4619 3.5273 -6.1550 42 1 4.7778 1.3862 -6.0110 43 1 6.5027 1.7764 -8.0443 44 1 6.1450 0.0386 -7.9026 45 1 7.8464 0.1380 -13.5426 46 1 3.0400 -3.6772 -2.1724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107627670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:41 Heat of formation + Delta-G solvation = -3.020440 kcal Electronic energy + Delta-G solvation = -25959.920906 eV Core-core repulsion = 22203.351677 eV Total energy + Delta-G solvation = -3756.569229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27959 -39.63292 -37.45930 -36.42592 -34.87192 -32.47214 -32.44096 -31.52557 -30.40720 -28.66394 -27.67180 -26.59970 -25.51291 -25.02906 -23.28514 -21.87964 -20.95809 -20.44929 -18.35761 -17.80169 -17.55730 -16.67643 -16.35367 -15.67121 -15.55024 -15.22371 -15.07563 -14.86591 -14.82605 -14.60924 -14.28342 -14.21237 -13.74957 -13.42253 -13.30769 -13.15590 -12.95981 -12.63165 -12.60222 -12.16342 -11.96497 -11.89138 -11.75648 -11.49085 -11.39764 -11.14865 -11.07996 -11.05026 -10.79104 -10.76609 -9.99527 -9.84696 -9.50198 -9.39232 -9.12832 -9.06666 -8.47351 -8.27956 -6.53415 -6.24289 -3.95153 0.82819 1.15162 2.60641 2.94212 2.98883 3.20981 3.25821 3.29529 3.61716 3.67234 3.76012 4.08999 4.17866 4.23803 4.43051 4.56800 4.68554 4.70467 4.75327 4.93227 4.98111 5.02577 5.11039 5.13330 5.17202 5.20480 5.26359 5.29525 5.38032 5.43573 5.45856 5.57708 5.60146 5.77799 5.80939 5.81100 5.83343 5.94841 6.07002 6.09332 6.43634 6.49190 6.97418 7.26920 7.55211 7.57725 8.08531 8.32713 8.49176 9.21261 10.83102 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.002044 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.301960 B =13692.162690 C =14614.601384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C -0.147 4.147 4 C 0.210 3.790 5 C -0.292 4.292 6 C 0.440 3.560 7 N -0.709 5.709 8 C 0.118 3.882 9 C 0.133 3.867 10 H 0.097 0.903 11 C -0.161 4.161 12 N -0.737 5.737 13 C 0.535 3.465 14 O -0.514 6.514 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.581 5.581 26 C 0.341 3.659 27 N -0.566 5.566 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.141 0.859 36 H 0.413 0.587 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.119 3.053 26.651 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.204 4.204 4 C 0.067 3.933 5 C -0.320 4.320 6 C 0.196 3.804 7 N -0.342 5.342 8 C -0.007 4.007 9 C 0.028 3.972 10 H 0.115 0.885 11 C -0.220 4.220 12 N -0.393 5.393 13 C 0.321 3.679 14 O -0.387 6.387 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 N -0.305 5.305 26 C 0.051 3.949 27 N -0.285 5.285 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.251 0.749 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.383 2.507 25.042 28.987 hybrid contribution 2.489 0.184 0.718 2.597 sum -11.894 2.692 25.760 28.501 Atomic orbital electron populations 1.21783 0.93204 1.02491 1.02317 1.20100 0.96441 0.95525 0.94703 1.21907 1.01448 0.94621 1.02463 1.21303 0.88647 0.89487 0.93882 1.21939 1.13336 1.02869 0.93844 1.18537 0.87082 0.88406 0.86366 1.44533 1.70304 1.10154 1.09171 1.21845 1.01463 0.80312 0.97108 1.21093 0.85193 0.96866 0.94068 0.88525 1.22125 1.01904 0.94152 1.03827 1.46131 1.10074 1.74685 1.08410 1.20344 0.90577 0.75392 0.81601 1.90714 1.50617 1.48673 1.48726 1.23538 0.94797 1.04442 1.07717 1.85384 1.12568 1.92284 0.92996 1.22861 0.94026 1.55882 0.95652 0.90931 1.24994 0.99064 0.94731 0.94794 1.70012 1.35749 1.46164 0.98326 0.86164 0.82866 0.78713 0.77743 1.20234 1.20733 1.19705 1.67973 1.24777 1.08895 1.28843 1.24655 0.88377 0.99877 0.81953 1.68243 1.18173 1.09663 1.32404 0.92412 0.92192 0.91610 0.88882 0.92293 0.92087 0.91614 0.84146 0.74902 0.90141 0.90899 0.92146 0.90839 0.91471 0.76686 0.89216 0.89196 0.92159 0.78919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.18 37.16 0.34 -0.45 16 2 C -0.05 -0.32 3.27 -91.77 -0.30 -0.62 16 3 C -0.15 -0.73 8.64 37.16 0.32 -0.41 16 4 C 0.21 1.94 5.82 -82.32 -0.48 1.46 16 5 C -0.29 -2.59 8.48 -39.11 -0.33 -2.92 16 6 C 0.44 4.66 7.71 -154.78 -1.19 3.46 16 7 N -0.71 -6.59 5.54 -60.27 -0.33 -6.92 16 8 C 0.12 0.82 4.48 -4.04 -0.02 0.80 16 9 C 0.13 1.26 2.73 -67.93 -0.19 1.07 16 10 H 0.10 1.12 7.58 -51.93 -0.39 0.72 16 11 C -0.16 -1.39 9.48 37.16 0.35 -1.03 16 12 N -0.74 -8.56 4.52 -53.81 -0.24 -8.80 16 13 C 0.53 9.21 7.81 -10.99 -0.09 9.13 16 14 O -0.51 -10.88 15.53 5.55 0.09 -10.79 16 15 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 16 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 17 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 21 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 N -0.58 -6.92 10.47 -13.82 -0.14 -7.07 16 26 C 0.34 3.59 12.28 -92.19 -1.13 2.46 16 27 N -0.57 -6.06 10.37 -10.88 -0.11 -6.18 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.14 0.93 5.24 -52.49 -0.28 0.65 16 36 H 0.41 4.42 8.26 -40.82 -0.34 4.08 16 37 H 0.08 0.45 7.97 -51.93 -0.41 0.04 16 38 H 0.07 0.41 7.98 -51.93 -0.41 0.00 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 398.06 15.07 6.00 6.00 Total: -1.00 -35.06 398.06 -10.69 -45.75 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.14 Total: 3.42 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.29 Total: -2.70 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.10 Total: -54.24 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.06 -10.69 -45.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107627670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.731 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds