Wall clock time and date at job start Tue Mar 31 2020 20:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38120 * 120.39929 * 84.99729 * 4 2 1 6 6 C 1.39620 * 118.33006 * 179.97438 * 5 4 2 7 7 N 1.38544 * 120.52753 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00252 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47257 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47634 * 64.99734 * 9 8 7 11 11 C 1.53001 * 109.47412 * 185.00138 * 9 8 7 12 12 N 1.46500 * 109.47298 * 304.99903 * 9 8 7 13 13 C 1.34773 * 120.00692 * 155.00038 * 12 9 8 14 14 O 1.21290 * 119.99509 * 0.02562 * 13 12 9 15 15 C 1.50695 * 120.00672 * 180.02562 * 13 12 9 16 16 S 1.81003 * 109.47268 * 179.97438 * 15 13 12 17 17 C 1.76204 * 99.99679 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00183 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99377 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00228 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99442 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47171 * 90.00257 * 21 19 17 23 23 H 1.48503 * 109.47129 * 210.00476 * 21 19 17 24 24 H 1.48498 * 109.47363 * 330.00016 * 21 19 17 25 25 N 1.32986 * 118.94148 * 0.02562 * 6 5 4 26 26 C 1.31753 * 120.68830 * 359.97438 * 25 6 5 27 27 N 1.31791 * 121.82863 * 359.73649 * 26 25 6 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 35 35 H 1.07994 * 120.83386 * 359.96502 * 5 4 2 36 36 H 0.97006 * 119.99673 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47083 * 299.99689 * 8 7 6 38 38 H 1.09001 * 109.47190 * 60.00191 * 8 7 6 39 39 H 1.09000 * 109.47051 * 59.99239 * 11 9 8 40 40 H 1.08999 * 109.47275 * 179.97438 * 11 9 8 41 41 H 1.09005 * 109.46635 * 300.00016 * 11 9 8 42 42 H 0.97005 * 119.99904 * 334.99917 * 12 9 8 43 43 H 1.09000 * 109.46612 * 299.99931 * 15 13 12 44 44 H 1.08997 * 109.47149 * 59.99523 * 15 13 12 45 45 H 0.96999 * 119.99742 * 179.97438 * 20 19 17 46 46 H 1.07991 * 119.08682 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1673 -0.0293 -2.4245 6 6 2.6371 -0.7296 -3.5373 7 7 2.7904 -0.0913 -4.7573 8 6 2.4593 1.3299 -4.8872 9 6 2.7160 1.7840 -6.3255 10 1 2.0320 1.2660 -6.9977 11 6 2.4900 3.2935 -6.4318 12 7 4.0977 1.4698 -6.6976 13 6 4.4239 1.2969 -7.9938 14 8 3.5736 1.4019 -8.8523 15 6 5.8451 0.9731 -8.3765 16 16 5.9616 0.8017 -10.1746 17 6 7.6777 0.4362 -10.3365 18 1 8.3030 0.3795 -9.4577 19 6 8.2256 0.2201 -11.5933 20 7 7.4634 0.2887 -12.6642 21 14 10.0447 -0.1682 -11.7649 22 1 10.2457 -1.6380 -11.6979 23 1 10.5384 0.3400 -13.0700 24 1 10.7963 0.4849 -10.6632 25 7 2.9349 -2.0192 -3.4075 26 6 2.7908 -2.6292 -2.2486 27 7 2.3552 -1.9949 -1.1787 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 1.9157 1.0185 -2.4956 36 1 3.1170 -0.5854 -5.5256 37 1 1.4085 1.4821 -4.6406 38 1 3.0804 1.9114 -4.2059 39 1 3.1740 3.8115 -5.7596 40 1 2.6733 3.6171 -7.4564 41 1 1.4619 3.5273 -6.1550 42 1 4.7778 1.3862 -6.0110 43 1 6.5027 1.7764 -8.0443 44 1 6.1450 0.0386 -7.9026 45 1 7.8464 0.1380 -13.5426 46 1 3.0400 -3.6772 -2.1724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107627670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:40 Heat of formation + Delta-G solvation = -26.289623 kcal Electronic energy + Delta-G solvation = -25960.929934 eV Core-core repulsion = 22203.351677 eV Total energy + Delta-G solvation = -3757.578256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99122 -40.85335 -38.33424 -37.04583 -35.78501 -34.60167 -33.32862 -32.49746 -31.11255 -30.02712 -28.07485 -27.67409 -27.24281 -25.69055 -23.99485 -22.79979 -21.65590 -21.50269 -19.90756 -18.98648 -18.19383 -17.97263 -17.41677 -16.89497 -16.47270 -16.30193 -16.28566 -16.06474 -15.79138 -15.68812 -15.12074 -14.83794 -14.82967 -14.61341 -14.29778 -14.02724 -13.97492 -13.76427 -13.28291 -13.18013 -12.98855 -12.92617 -12.90692 -12.60771 -12.42513 -12.28587 -12.08893 -12.00022 -11.80662 -11.73752 -11.41165 -11.16064 -10.96333 -10.67870 -10.29626 -10.21381 -10.14887 -9.16433 -8.67746 -8.36484 -6.14097 0.12582 0.41748 1.25228 1.40733 1.45171 1.55517 1.58517 1.92222 2.23863 2.27929 2.94074 2.97686 3.16901 3.30003 3.41250 3.54147 3.77365 3.95381 4.04302 4.07886 4.16650 4.22820 4.26696 4.30352 4.44805 4.48613 4.50952 4.57991 4.64965 4.73782 4.75726 4.84556 4.97250 5.00152 5.01410 5.17828 5.25827 5.34068 5.39202 5.40144 5.43186 5.46094 5.76575 6.17994 6.23519 6.43961 6.51342 7.05067 7.21175 7.35142 8.72572 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.002044 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.301960 B =13692.162690 C =14614.601384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C -0.143 4.143 4 C 0.198 3.802 5 C -0.286 4.286 6 C 0.425 3.575 7 N -0.711 5.711 8 C 0.125 3.875 9 C 0.134 3.866 10 H 0.073 0.927 11 C -0.156 4.156 12 N -0.711 5.711 13 C 0.539 3.461 14 O -0.560 6.560 15 C -0.132 4.132 16 S -0.148 6.148 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.910 5.910 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.259 1.259 25 N -0.610 5.610 26 C 0.330 3.670 27 N -0.583 5.583 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.404 0.596 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.093 0.907 42 H 0.414 0.586 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 4.265 29.495 32.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 C -0.201 4.201 4 C 0.056 3.944 5 C -0.314 4.314 6 C 0.181 3.819 7 N -0.343 5.343 8 C 0.001 3.999 9 C 0.029 3.971 10 H 0.092 0.908 11 C -0.215 4.215 12 N -0.366 5.366 13 C 0.324 3.676 14 O -0.437 6.437 15 C -0.283 4.283 16 S 0.079 5.921 17 C -0.695 4.695 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.546 5.546 21 Si 0.819 3.181 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.182 1.182 25 N -0.335 5.335 26 C 0.040 3.960 27 N -0.303 5.303 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.185 0.815 36 H 0.240 0.760 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.112 0.888 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.970 3.745 27.961 31.480 hybrid contribution 2.258 -0.184 -0.033 2.266 sum -11.712 3.561 27.928 30.493 Atomic orbital electron populations 1.21765 0.92405 1.01859 1.03389 1.20182 0.96981 0.96298 0.93202 1.21897 1.01007 0.93419 1.03735 1.21828 0.88187 0.89235 0.95135 1.22147 1.12421 1.03894 0.92903 1.18797 0.87538 0.88387 0.87137 1.44632 1.70262 1.10876 1.08514 1.21945 1.03418 0.79231 0.95275 1.21239 0.82859 0.97619 0.95346 0.90833 1.22078 1.04201 0.93031 1.02168 1.45864 1.11725 1.72438 1.06531 1.19956 0.89127 0.75434 0.83040 1.90706 1.51381 1.51179 1.50474 1.23383 0.97144 1.05975 1.01806 1.85530 1.13265 1.92641 1.00616 1.23198 0.94256 1.55751 0.96296 0.90083 1.26114 1.04441 0.94282 0.94314 1.70173 1.38155 1.47349 0.98968 0.84971 0.76246 0.78752 0.78126 1.19403 1.20204 1.18249 1.67970 1.25953 1.10029 1.29579 1.25051 0.88363 1.00779 0.81770 1.68296 1.18743 1.10694 1.32544 0.92007 0.93687 0.89849 0.89520 0.92951 0.91026 0.90159 0.81531 0.75987 0.87812 0.88361 0.90169 0.94342 0.88802 0.74955 0.87380 0.87655 0.91981 0.77231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.18 71.98 0.66 -0.58 16 2 C -0.05 -0.53 3.27 -11.54 -0.04 -0.57 16 3 C -0.14 -0.98 8.64 71.98 0.62 -0.35 16 4 C 0.20 3.35 5.82 42.42 0.25 3.60 16 5 C -0.29 -4.36 8.48 22.58 0.19 -4.17 16 6 C 0.43 8.32 7.71 133.16 1.03 9.34 16 7 N -0.71 -11.83 5.54 -344.61 -1.91 -13.74 16 8 C 0.13 1.31 4.48 86.38 0.39 1.70 16 9 C 0.13 2.27 2.73 44.99 0.12 2.40 16 10 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 11 C -0.16 -2.31 9.48 71.98 0.68 -1.63 16 12 N -0.71 -15.34 4.52 -442.53 -2.00 -17.34 16 13 C 0.54 18.48 7.81 87.66 0.68 19.17 16 14 O -0.56 -24.43 15.53 -3.06 -0.05 -24.48 16 15 C -0.13 -5.08 6.16 71.23 0.44 -4.65 16 16 S -0.15 -8.11 20.57 -56.49 -1.16 -9.28 16 17 C -0.55 -31.22 9.50 67.96 0.65 -30.58 16 18 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 21 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 N -0.61 -14.25 10.47 -197.62 -2.07 -16.32 16 26 C 0.33 6.85 12.28 180.90 2.22 9.08 16 27 N -0.58 -12.13 10.37 -188.34 -1.95 -14.09 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.34 6.57 -2.39 -0.02 0.32 16 34 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.17 1.50 5.24 -2.91 -0.02 1.49 16 36 H 0.40 8.24 8.26 -92.70 -0.77 7.47 16 37 H 0.10 0.71 7.97 -2.39 -0.02 0.69 16 38 H 0.10 0.62 7.98 -2.39 -0.02 0.60 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.41 6.75 8.60 -92.70 -0.80 5.95 16 43 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 44 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.21 3.17 8.06 -2.92 -0.02 3.15 16 Total: -1.00 -80.16 398.06 0.97 -79.19 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.56 Total: 21.90 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 8.36 Total: 3.98 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -7.65 Total: -117.07 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.28 kcal Total: -80.16 0.97 -79.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107627670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.903 kcal (2) G-P(sol) polarization free energy of solvation -80.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds