Wall clock time and date at job start Tue Mar 31 2020 20:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47126 * 2 1 4 4 C 1.53001 * 109.47391 * 120.00832 * 2 1 3 5 5 C 1.50701 * 109.46671 * 294.99610 * 4 2 1 6 6 O 1.21283 * 120.00046 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99986 * 179.97438 * 5 4 2 8 8 C 1.46495 * 119.99922 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46922 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.55457 * 304.87757 * 9 8 7 11 11 C 1.53297 * 109.51246 * 184.74770 * 9 8 7 12 12 N 1.47149 * 108.38367 * 187.77545 * 11 9 8 13 13 C 1.36939 * 120.98120 * 230.55672 * 12 11 9 14 14 H 1.08001 * 119.99552 * 153.30577 * 13 12 11 15 15 C 1.38813 * 120.00119 * 333.30436 * 13 12 11 16 16 N 1.31618 * 119.99580 * 343.55205 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 163.55336 * 15 13 12 18 18 H 1.48500 * 109.47155 * 90.00141 * 17 15 13 19 19 H 1.48503 * 109.47042 * 209.99744 * 17 15 13 20 20 H 1.48502 * 109.47247 * 329.99983 * 17 15 13 21 21 C 1.47151 * 118.03345 * 50.53743 * 12 11 9 22 22 C 1.53288 * 108.38873 * 309.46127 * 21 12 11 23 23 O 1.42962 * 109.50823 * 65.00503 * 9 8 7 24 24 C 1.53004 * 109.46487 * 240.00360 * 2 1 3 25 25 F 1.39906 * 109.47387 * 299.99843 * 24 2 1 26 26 F 1.39897 * 109.47202 * 60.00290 * 24 2 1 27 27 F 1.39898 * 109.46790 * 180.02562 * 24 2 1 28 28 H 1.08991 * 109.47505 * 59.99295 * 1 2 3 29 29 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46720 * 299.99745 * 1 2 3 31 31 H 1.08996 * 109.46943 * 174.99706 * 4 2 1 32 32 H 1.08995 * 109.47219 * 54.99300 * 4 2 1 33 33 H 0.96995 * 119.99480 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.46798 * 60.00606 * 8 7 5 35 35 H 1.08995 * 109.47425 * 300.00149 * 8 7 5 36 36 H 1.09001 * 109.47240 * 180.12515 * 10 9 8 37 37 H 1.09004 * 109.47239 * 300.12331 * 10 9 8 38 38 H 1.08997 * 109.47556 * 60.12398 * 10 9 8 39 39 H 1.09000 * 109.67939 * 307.50216 * 11 9 8 40 40 H 1.08998 * 109.67890 * 68.01377 * 11 9 8 41 41 H 0.97005 * 119.99361 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.67871 * 189.73706 * 21 12 11 43 43 H 1.09002 * 109.68254 * 69.19321 * 21 12 11 44 44 H 1.08999 * 109.51584 * 172.22696 * 22 21 12 45 45 H 1.09004 * 109.51249 * 292.33325 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 8 1.0111 1.0867 2.3633 7 7 1.9847 -0.3922 3.7001 8 6 1.5976 0.3646 4.8932 9 6 2.1076 -0.3569 6.1424 10 6 1.5955 -1.7985 6.1461 11 6 1.6029 0.3690 7.3948 12 7 2.2554 -0.2271 8.5713 13 6 1.5214 -0.6377 9.6520 14 1 1.8940 -1.4255 10.2899 15 6 0.2986 -0.0413 9.9276 16 7 -0.0119 1.1106 9.3716 17 14 -0.9060 -0.8735 11.0876 18 1 -0.6509 -0.4166 12.4774 19 1 -2.2943 -0.5192 10.6971 20 1 -0.7305 -2.3461 11.0105 21 6 3.7199 -0.3693 8.5520 22 6 4.1215 -1.0591 7.2434 23 8 3.5372 -0.3578 6.1430 24 6 2.0399 -0.7212 -1.2494 25 9 1.5735 -2.0403 -1.2494 26 9 1.5736 -0.0616 -2.3915 27 9 3.4389 -0.7218 -1.2491 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1264 -0.7996 1.2054 32 1 1.6055 -1.7199 1.2950 33 1 2.4885 -1.2161 3.7906 34 1 0.5113 0.4436 4.9368 35 1 2.0330 1.3628 4.8474 36 1 1.9577 -2.3105 7.0376 37 1 0.5055 -1.7970 6.1456 38 1 1.9584 -2.3153 5.2577 39 1 1.8549 1.4276 7.3321 40 1 0.5221 0.2532 7.4757 41 1 -0.8665 1.5271 9.5639 42 1 4.0411 -0.9746 9.3997 43 1 4.1851 0.6150 8.6060 44 1 5.2071 -1.0505 7.1454 45 1 3.7648 -2.0891 7.2503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108177903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:26 Heat of formation + Delta-G solvation = -220.270520 kcal Electronic energy + Delta-G solvation = -30757.700917 eV Core-core repulsion = 25974.808655 eV Total energy + Delta-G solvation = -4782.892261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.37982 -47.85949 -47.84024 -40.06691 -38.95429 -35.61740 -34.78850 -34.37192 -31.89140 -31.30285 -28.68014 -27.98914 -26.65459 -26.31944 -25.26084 -23.28218 -22.01731 -21.15946 -20.34762 -18.95836 -18.70651 -18.55581 -17.83130 -17.18168 -16.57242 -16.03839 -15.95847 -15.33991 -15.07987 -14.84706 -14.73786 -14.41363 -14.28018 -14.23608 -14.03624 -14.00091 -13.94800 -13.70641 -13.53248 -13.32298 -13.12110 -12.94904 -12.61093 -12.36938 -12.00346 -11.68295 -11.65721 -11.57538 -11.50501 -11.24428 -11.06437 -10.86727 -10.70747 -10.37000 -10.31007 -10.05865 -9.85974 -9.58991 -9.10071 -8.93085 -8.58542 -6.78317 -5.89319 -3.33084 2.42731 2.59273 3.11657 3.30458 3.38124 3.39190 3.56662 3.78329 3.78852 4.19034 4.36778 4.39506 4.55010 4.75478 4.96424 5.09435 5.19297 5.20667 5.29322 5.41379 5.46061 5.51866 5.60904 5.63318 5.86470 5.88218 5.94325 6.00405 6.03607 6.08388 6.25136 6.38924 6.50716 6.61340 6.69859 6.77308 7.01556 7.40797 7.53095 7.66376 7.82278 8.20837 8.28535 9.06168 9.69096 10.26327 11.18729 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.002445 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.851566 B =11451.457004 C =12072.956366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.145 4.145 5 C 0.516 3.484 6 O -0.540 6.540 7 N -0.715 5.715 8 C 0.139 3.861 9 C 0.077 3.923 10 C -0.162 4.162 11 C 0.161 3.839 12 N -0.591 5.591 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.286 1.286 19 H -0.288 1.288 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 C 0.453 3.547 25 F -0.183 7.183 26 F -0.182 7.182 27 F -0.184 7.184 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.403 0.597 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.029 0.971 40 H 0.096 0.904 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 -5.920 -18.397 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.136 4.136 3 H 0.141 0.859 4 C -0.185 4.185 5 C 0.301 3.699 6 O -0.419 6.419 7 N -0.366 5.366 8 C 0.016 3.984 9 C 0.036 3.964 10 C -0.219 4.219 11 C 0.034 3.966 12 N -0.314 5.314 13 C -0.384 4.384 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.213 1.213 19 H -0.214 1.214 20 H -0.205 1.205 21 C -0.018 4.018 22 C -0.032 4.032 23 O -0.304 6.304 24 C 0.399 3.601 25 F -0.164 7.164 26 F -0.164 7.164 27 F -0.166 7.166 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.238 0.762 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.114 -5.011 -18.572 19.672 hybrid contribution -0.317 -1.008 0.714 1.275 sum 3.797 -6.019 -17.859 19.225 Atomic orbital electron populations 1.22017 0.90852 1.03422 1.05359 1.22164 1.00406 1.01708 0.89366 0.85872 1.21709 1.03972 1.00798 0.92023 1.20139 0.79708 0.85636 0.84403 1.90694 1.40158 1.24456 1.86549 1.46017 1.57007 1.27910 1.05652 1.21373 1.00089 0.95385 0.81589 1.22559 0.81611 0.95853 0.96371 1.22203 1.01741 0.96573 1.01417 1.21278 0.99442 0.93720 0.82180 1.43990 0.99552 1.72770 1.15107 1.19139 1.00952 1.13442 1.04899 0.91460 1.25052 1.00138 0.95359 0.98942 1.70010 1.22938 1.14981 1.46601 0.86298 0.80700 0.79160 0.80624 1.21310 1.21444 1.20456 1.21602 0.86888 0.97964 0.95315 1.23037 0.96609 0.95394 0.88140 1.87820 1.19343 1.76347 1.46889 1.20683 0.75371 0.77714 0.86365 1.93171 1.88446 1.37998 1.96834 1.93177 1.88464 1.80740 1.53974 1.93183 1.30163 1.96427 1.96813 0.91444 0.91802 0.88132 0.87638 0.87602 0.76178 0.89877 0.90715 0.90743 0.91845 0.93979 0.95265 0.88587 0.93405 0.92028 0.95640 0.90169 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.69 37.16 0.32 -1.12 16 2 C -0.12 -1.03 2.01 -90.61 -0.18 -1.22 16 3 H 0.12 1.12 7.95 -51.93 -0.41 0.71 16 4 C -0.14 -1.24 4.93 -27.88 -0.14 -1.38 16 5 C 0.52 6.32 7.55 -10.98 -0.08 6.23 16 6 O -0.54 -8.36 13.96 5.56 0.08 -8.28 16 7 N -0.71 -9.01 5.19 -60.29 -0.31 -9.32 16 8 C 0.14 2.20 4.85 -4.04 -0.02 2.18 16 9 C 0.08 1.35 0.78 -90.47 -0.07 1.28 16 10 C -0.16 -2.59 7.86 37.15 0.29 -2.29 16 11 C 0.16 3.60 4.11 -3.53 -0.01 3.59 16 12 N -0.59 -13.98 2.56 -171.83 -0.44 -14.42 16 13 C -0.26 -6.63 9.65 -15.06 -0.15 -6.77 16 14 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 15 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 16 N -0.90 -25.14 11.14 55.49 0.62 -24.52 16 17 Si 0.90 20.84 29.58 -169.99 -5.03 15.81 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.11 2.16 6.73 -3.54 -0.02 2.14 16 22 C 0.05 0.76 6.60 37.31 0.25 1.01 16 23 O -0.38 -6.74 10.17 -35.23 -0.36 -7.10 16 24 C 0.45 4.09 2.69 37.16 0.10 4.19 16 25 F -0.18 -1.71 16.37 2.25 0.04 -1.67 16 26 F -0.18 -1.78 16.80 2.25 0.04 -1.74 16 27 F -0.18 -1.76 16.71 2.25 0.04 -1.72 16 28 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 29 H 0.06 0.52 7.80 -51.93 -0.41 0.12 16 30 H 0.10 1.11 5.95 -51.93 -0.31 0.80 16 31 H 0.11 0.77 7.66 -51.93 -0.40 0.37 16 32 H 0.11 0.74 7.94 -51.93 -0.41 0.33 16 33 H 0.40 4.37 7.00 -40.82 -0.29 4.09 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.33 6.11 -51.93 -0.32 1.01 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.54 6.59 -51.93 -0.34 0.20 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 2.39 6.16 -51.93 -0.32 2.07 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.77 6.26 -51.93 -0.32 0.44 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -29.56 365.46 -6.06 -35.62 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.43 Total: 3.96 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 0.20 Total: 7.87 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.14 Total: -48.26 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.28 Total: -15.38 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.56 -6.06 -35.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108177903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.648 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds