Wall clock time and date at job start Tue Mar 31 2020 20:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47126 * 2 1 4 4 C 1.53001 * 109.47391 * 120.00832 * 2 1 3 5 5 C 1.50701 * 109.46671 * 294.99610 * 4 2 1 6 6 O 1.21283 * 120.00046 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99986 * 179.97438 * 5 4 2 8 8 C 1.46495 * 119.99922 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46922 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.55457 * 304.87757 * 9 8 7 11 11 C 1.53297 * 109.51246 * 184.74770 * 9 8 7 12 12 N 1.47149 * 108.38367 * 187.77545 * 11 9 8 13 13 C 1.36939 * 120.98120 * 230.55672 * 12 11 9 14 14 H 1.08001 * 119.99552 * 153.30577 * 13 12 11 15 15 C 1.38813 * 120.00119 * 333.30436 * 13 12 11 16 16 N 1.31618 * 119.99580 * 343.55205 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 163.55336 * 15 13 12 18 18 H 1.48500 * 109.47155 * 90.00141 * 17 15 13 19 19 H 1.48503 * 109.47042 * 209.99744 * 17 15 13 20 20 H 1.48502 * 109.47247 * 329.99983 * 17 15 13 21 21 C 1.47151 * 118.03345 * 50.53743 * 12 11 9 22 22 C 1.53288 * 108.38873 * 309.46127 * 21 12 11 23 23 O 1.42962 * 109.50823 * 65.00503 * 9 8 7 24 24 C 1.53004 * 109.46487 * 240.00360 * 2 1 3 25 25 F 1.39906 * 109.47387 * 299.99843 * 24 2 1 26 26 F 1.39897 * 109.47202 * 60.00290 * 24 2 1 27 27 F 1.39898 * 109.46790 * 180.02562 * 24 2 1 28 28 H 1.08991 * 109.47505 * 59.99295 * 1 2 3 29 29 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46720 * 299.99745 * 1 2 3 31 31 H 1.08996 * 109.46943 * 174.99706 * 4 2 1 32 32 H 1.08995 * 109.47219 * 54.99300 * 4 2 1 33 33 H 0.96995 * 119.99480 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.46798 * 60.00606 * 8 7 5 35 35 H 1.08995 * 109.47425 * 300.00149 * 8 7 5 36 36 H 1.09001 * 109.47240 * 180.12515 * 10 9 8 37 37 H 1.09004 * 109.47239 * 300.12331 * 10 9 8 38 38 H 1.08997 * 109.47556 * 60.12398 * 10 9 8 39 39 H 1.09000 * 109.67939 * 307.50216 * 11 9 8 40 40 H 1.08998 * 109.67890 * 68.01377 * 11 9 8 41 41 H 0.97005 * 119.99361 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.67871 * 189.73706 * 21 12 11 43 43 H 1.09002 * 109.68254 * 69.19321 * 21 12 11 44 44 H 1.08999 * 109.51584 * 172.22696 * 22 21 12 45 45 H 1.09004 * 109.51249 * 292.33325 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 8 1.0111 1.0867 2.3633 7 7 1.9847 -0.3922 3.7001 8 6 1.5976 0.3646 4.8932 9 6 2.1076 -0.3569 6.1424 10 6 1.5955 -1.7985 6.1461 11 6 1.6029 0.3690 7.3948 12 7 2.2554 -0.2271 8.5713 13 6 1.5214 -0.6377 9.6520 14 1 1.8940 -1.4255 10.2899 15 6 0.2986 -0.0413 9.9276 16 7 -0.0119 1.1106 9.3716 17 14 -0.9060 -0.8735 11.0876 18 1 -0.6509 -0.4166 12.4774 19 1 -2.2943 -0.5192 10.6971 20 1 -0.7305 -2.3461 11.0105 21 6 3.7199 -0.3693 8.5520 22 6 4.1215 -1.0591 7.2434 23 8 3.5372 -0.3578 6.1430 24 6 2.0399 -0.7212 -1.2494 25 9 1.5735 -2.0403 -1.2494 26 9 1.5736 -0.0616 -2.3915 27 9 3.4389 -0.7218 -1.2491 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1264 -0.7996 1.2054 32 1 1.6055 -1.7199 1.2950 33 1 2.4885 -1.2161 3.7906 34 1 0.5113 0.4436 4.9368 35 1 2.0330 1.3628 4.8474 36 1 1.9577 -2.3105 7.0376 37 1 0.5055 -1.7970 6.1456 38 1 1.9584 -2.3153 5.2577 39 1 1.8549 1.4276 7.3321 40 1 0.5221 0.2532 7.4757 41 1 -0.8665 1.5271 9.5639 42 1 4.0411 -0.9746 9.3997 43 1 4.1851 0.6150 8.6060 44 1 5.2071 -1.0505 7.1454 45 1 3.7648 -2.0891 7.2503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108177903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:25 Heat of formation + Delta-G solvation = -238.943107 kcal Electronic energy + Delta-G solvation = -30758.510621 eV Core-core repulsion = 25974.808655 eV Total energy + Delta-G solvation = -4783.701966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.10027 -48.59013 -48.55419 -41.21962 -40.31118 -36.72883 -36.16967 -35.67990 -33.27688 -33.13796 -29.70384 -29.41873 -27.99522 -27.35971 -26.61810 -24.97545 -23.16052 -22.41368 -21.33385 -20.28979 -19.60005 -19.33905 -18.92411 -18.59989 -17.66122 -17.40592 -16.99004 -16.77120 -16.38542 -16.04124 -15.76239 -15.56945 -15.49472 -15.28649 -15.14570 -15.00407 -14.79537 -14.72523 -14.69887 -14.54530 -14.46560 -14.01707 -13.91885 -13.50329 -13.18820 -13.14767 -12.90977 -12.76973 -12.52187 -12.41631 -12.36539 -12.32187 -12.25156 -12.16310 -11.93198 -11.83090 -11.13600 -10.91440 -10.71635 -10.48721 -10.07637 -8.70271 -7.89312 -5.36318 1.46083 1.48200 1.57173 1.62308 1.67495 2.16861 2.48631 2.80270 2.83770 3.03033 3.08057 3.26025 3.52053 3.61559 3.86447 3.89087 4.01248 4.05067 4.12667 4.25750 4.43883 4.47745 4.54144 4.55006 4.61469 4.66398 4.73298 4.79283 4.84087 4.94705 4.98893 5.06641 5.13823 5.22290 5.25556 5.38464 5.44628 5.55191 5.62375 6.30338 6.38722 6.55304 7.07948 7.24148 7.77056 8.30970 9.16233 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.002445 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.851566 B =11451.457004 C =12072.956366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 H 0.118 0.882 4 C -0.136 4.136 5 C 0.516 3.484 6 O -0.576 6.576 7 N -0.706 5.706 8 C 0.150 3.850 9 C 0.092 3.908 10 C -0.153 4.153 11 C 0.168 3.832 12 N -0.607 5.607 13 C -0.259 4.259 14 H 0.073 0.927 15 C -0.049 4.049 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.287 1.287 19 H -0.294 1.294 20 H -0.266 1.266 21 C 0.101 3.899 22 C 0.053 3.947 23 O -0.385 6.385 24 C 0.460 3.540 25 F -0.182 7.182 26 F -0.187 7.187 27 F -0.185 7.185 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.415 0.585 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.081 0.919 39 H -0.009 1.009 40 H 0.066 0.934 41 H 0.250 0.750 42 H 0.071 0.929 43 H 0.011 0.989 44 H 0.117 0.883 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -8.425 -19.684 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.135 4.135 3 H 0.137 0.863 4 C -0.175 4.175 5 C 0.303 3.697 6 O -0.456 6.456 7 N -0.359 5.359 8 C 0.025 3.975 9 C 0.051 3.949 10 C -0.211 4.211 11 C 0.041 3.959 12 N -0.332 5.332 13 C -0.389 4.389 14 H 0.090 0.910 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.214 1.214 19 H -0.221 1.221 20 H -0.191 1.191 21 C -0.025 4.025 22 C -0.024 4.024 23 O -0.304 6.304 24 C 0.406 3.594 25 F -0.164 7.164 26 F -0.169 7.169 27 F -0.167 7.167 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.253 0.747 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.009 0.991 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.029 0.971 44 H 0.135 0.865 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.333 -7.558 -19.874 21.921 hybrid contribution -0.612 -0.178 1.131 1.298 sum 4.722 -7.736 -18.743 20.819 Atomic orbital electron populations 1.21963 0.91090 1.03859 1.04508 1.22122 1.00206 1.01617 0.89551 0.86343 1.21718 1.05387 1.00973 0.89448 1.20761 0.78629 0.85281 0.85006 1.90696 1.41628 1.26237 1.87020 1.45834 1.57223 1.28029 1.04767 1.20986 0.99229 0.94741 0.82506 1.22208 0.81808 0.96464 0.94412 1.22110 1.01296 0.95108 1.02546 1.21053 0.97888 0.92379 0.84572 1.44252 1.01250 1.72608 1.15045 1.19487 1.01191 1.13019 1.05190 0.90968 1.25791 1.01866 0.95931 1.00900 1.70180 1.22999 1.16528 1.48473 0.85306 0.78140 0.78744 0.78441 1.21429 1.22067 1.19108 1.21826 0.84599 0.97893 0.98140 1.23092 0.98584 0.95193 0.85537 1.87832 1.18838 1.76719 1.47046 1.20571 0.75209 0.77589 0.86062 1.93176 1.88431 1.37934 1.96816 1.93170 1.88530 1.80880 1.54270 1.93183 1.30280 1.96429 1.96801 0.90999 0.90715 0.90265 0.85521 0.85190 0.74704 0.90927 0.92651 0.92203 0.92553 0.90059 0.99114 0.91541 0.94075 0.91073 0.97096 0.86533 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 8.69 71.98 0.63 -2.00 16 2 C -0.12 -1.81 2.01 -10.79 -0.02 -1.84 16 3 H 0.12 2.01 7.95 -2.39 -0.02 1.99 16 4 C -0.14 -1.93 4.93 29.85 0.15 -1.78 16 5 C 0.52 11.79 7.55 87.66 0.66 12.45 16 6 O -0.58 -17.70 13.96 -3.04 -0.04 -17.74 16 7 N -0.71 -16.45 5.19 -463.05 -2.40 -18.86 16 8 C 0.15 4.77 4.85 86.38 0.42 5.19 16 9 C 0.09 3.19 0.78 -10.69 -0.01 3.18 16 10 C -0.15 -4.61 7.86 71.98 0.57 -4.04 16 11 C 0.17 7.82 4.11 86.36 0.35 8.18 16 12 N -0.61 -29.13 2.56 -697.55 -1.79 -30.92 16 13 C -0.26 -13.57 9.65 84.03 0.81 -12.76 16 14 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 15 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 16 N -0.94 -54.29 11.14 21.65 0.24 -54.04 16 17 Si 0.97 43.41 29.58 68.60 2.03 45.44 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 C 0.10 3.94 6.73 86.35 0.58 4.53 16 22 C 0.05 1.61 6.60 72.08 0.48 2.09 16 23 O -0.38 -12.75 10.17 -148.98 -1.52 -14.27 16 24 C 0.46 7.24 2.69 71.98 0.19 7.43 16 25 F -0.18 -2.88 16.37 44.97 0.74 -2.14 16 26 F -0.19 -3.33 16.80 44.97 0.76 -2.58 16 27 F -0.19 -3.06 16.71 44.97 0.75 -2.31 16 28 H 0.07 1.11 7.80 -2.39 -0.02 1.09 16 29 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 30 H 0.08 1.72 5.95 -2.39 -0.01 1.71 16 31 H 0.13 1.34 7.66 -2.39 -0.02 1.33 16 32 H 0.13 1.29 7.94 -2.39 -0.02 1.27 16 33 H 0.42 7.56 7.00 -92.71 -0.65 6.91 16 34 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 2.00 6.11 -2.39 -0.01 1.99 16 37 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.08 1.80 6.59 -2.39 -0.02 1.78 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.07 3.48 6.16 -2.39 -0.01 3.46 16 41 H 0.25 14.15 8.31 -92.70 -0.77 13.37 16 42 H 0.07 2.60 7.96 -2.39 -0.02 2.58 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.06 1.75 6.26 -2.38 -0.01 1.73 16 Total: -1.00 -66.15 365.46 4.36 -61.78 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.37 Total: 17.26 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 5.23 Total: 18.38 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -3.95 Total: -103.82 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.56 Total: -32.01 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 2.24 Total: -7.03 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -66.15 4.36 -61.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108177903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.160 kcal (2) G-P(sol) polarization free energy of solvation -66.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds