Wall clock time and date at job start Tue Mar 31 2020 20:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 C 1.53003 * 109.46733 * 119.99944 * 2 1 3 5 5 C 1.53005 * 109.46903 * 295.16321 * 4 2 1 6 6 F 1.39897 * 109.46957 * 65.53778 * 5 4 2 7 7 F 1.39908 * 109.46888 * 185.53967 * 5 4 2 8 8 F 1.39903 * 109.47337 * 305.53160 * 5 4 2 9 9 C 1.50691 * 109.47111 * 239.99440 * 2 1 3 10 10 O 1.21282 * 120.00421 * 240.00114 * 9 2 1 11 11 N 1.34783 * 119.99699 * 60.00301 * 9 2 1 12 12 C 1.46500 * 119.99764 * 179.97438 * 11 9 2 13 13 C 1.53001 * 109.47305 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.51010 * 305.00620 * 13 12 11 15 15 C 1.53288 * 109.51856 * 184.89640 * 13 12 11 16 16 N 1.47146 * 108.39160 * 187.77245 * 15 13 12 17 17 C 1.36927 * 120.98823 * 230.51853 * 16 15 13 18 18 H 1.08000 * 120.00065 * 154.37072 * 17 16 15 19 19 C 1.38812 * 120.00129 * 334.36782 * 17 16 15 20 20 N 1.31625 * 119.99636 * 343.41790 * 19 17 16 21 21 Si 1.86804 * 120.00246 * 163.41054 * 19 17 16 22 22 H 1.48499 * 109.46631 * 60.00519 * 21 19 17 23 23 H 1.48497 * 109.46902 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47054 * 300.00340 * 21 19 17 25 25 C 1.47160 * 118.03133 * 50.53881 * 16 15 13 26 26 C 1.53301 * 108.38544 * 309.46619 * 25 16 15 27 27 O 1.42963 * 109.50749 * 65.10063 * 13 12 11 28 28 H 1.08998 * 109.46688 * 66.67454 * 1 2 3 29 29 H 1.09009 * 109.46780 * 306.68419 * 1 2 3 30 30 H 1.08991 * 109.47093 * 186.68404 * 1 2 3 31 31 H 1.09000 * 109.47652 * 55.16615 * 4 2 1 32 32 H 1.09007 * 109.47035 * 175.16859 * 4 2 1 33 33 H 0.96992 * 120.00074 * 0.02562 * 11 9 2 34 34 H 1.08999 * 109.47386 * 300.00314 * 12 11 9 35 35 H 1.08999 * 109.47315 * 60.00241 * 12 11 9 36 36 H 1.08993 * 109.47484 * 59.99392 * 14 13 12 37 37 H 1.09005 * 109.46939 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.46505 * 299.99014 * 14 13 12 39 39 H 1.09005 * 109.68158 * 307.50563 * 15 13 12 40 40 H 1.09013 * 109.67920 * 68.01171 * 15 13 12 41 41 H 0.97006 * 119.99547 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.67859 * 69.18762 * 25 16 15 43 43 H 1.08997 * 109.68171 * 189.74298 * 25 16 15 44 44 H 1.08997 * 109.51302 * 172.22210 * 26 25 16 45 45 H 1.09001 * 109.51027 * 292.33296 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6316 0.0669 2.4955 6 9 0.2380 0.0564 2.6180 7 9 2.2038 -0.5224 3.6282 8 9 2.0798 1.3871 2.3801 9 6 2.0323 -0.7105 -1.2303 10 8 2.7296 -1.6966 -1.1190 11 7 1.7067 -0.2500 -2.4545 12 6 2.1955 -0.9404 -3.6506 13 6 1.6850 -0.2197 -4.8999 14 6 0.1601 -0.1104 -4.8395 15 6 2.0927 -1.0090 -6.1491 16 7 1.7571 -0.2061 -7.3357 17 6 1.0411 -0.7441 -8.3715 18 1 0.4549 -0.1030 -9.0131 19 6 1.0688 -2.1136 -8.5968 20 7 2.0105 -2.8518 -8.0485 21 14 -0.2306 -2.9087 -9.6781 22 1 -0.1692 -2.3197 -11.0399 23 1 0.0193 -4.3703 -9.7586 24 1 -1.5748 -2.6681 -9.0948 25 6 2.2141 1.1921 -7.3765 26 6 1.8005 1.8744 -6.0674 27 8 2.2554 1.0897 -4.9624 28 1 -0.3632 0.4069 -0.9437 29 1 -0.3633 0.6140 0.8242 30 1 -0.3633 -1.0206 0.1196 31 1 1.6076 -1.7209 1.2937 32 1 3.1266 -0.7969 1.2071 33 1 1.1495 0.5388 -2.5435 34 1 3.2855 -0.9401 -3.6504 35 1 1.8325 -1.9682 -3.6508 36 1 -0.1290 0.4525 -3.9521 37 1 -0.2029 0.4036 -5.7296 38 1 -0.2742 -1.1091 -4.7937 39 1 3.1653 -1.2019 -6.1276 40 1 1.5504 -1.9542 -6.1794 41 1 2.0300 -3.8088 -8.2063 42 1 3.2989 1.2209 -7.4786 43 1 1.7517 1.7050 -8.2198 44 1 2.2473 2.8673 -6.0174 45 1 0.7146 1.9613 -6.0295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108180703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:05 Heat of formation + Delta-G solvation = -218.417019 kcal Electronic energy + Delta-G solvation = -30895.182449 eV Core-core repulsion = 26112.370562 eV Total energy + Delta-G solvation = -4782.811888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.42120 -47.91319 -47.86777 -40.12274 -38.94810 -35.32099 -34.96027 -34.39912 -31.81054 -31.29398 -29.37328 -28.00159 -26.62907 -25.84857 -24.76155 -23.28333 -22.69812 -21.19023 -20.15373 -18.99573 -18.84604 -18.61055 -17.80044 -17.19575 -16.60223 -16.01124 -15.74080 -15.41107 -15.10074 -14.95421 -14.76309 -14.43368 -14.34770 -14.18807 -14.12413 -14.04125 -13.90359 -13.82459 -13.56780 -13.21659 -13.08537 -12.77875 -12.51799 -12.42463 -11.98671 -11.88810 -11.71507 -11.63116 -11.54330 -11.24250 -11.05382 -10.85741 -10.71760 -10.35987 -10.31228 -10.04520 -9.82644 -9.58691 -9.10144 -8.93038 -8.57927 -6.79491 -5.88596 -3.31892 2.42767 2.59925 3.11277 3.31566 3.38110 3.38533 3.58800 3.73253 3.78239 4.19335 4.34376 4.39818 4.51989 4.65809 4.93212 5.08952 5.18489 5.28030 5.29932 5.40304 5.41899 5.46854 5.57147 5.61387 5.84097 5.86641 5.88427 5.95382 6.03366 6.08406 6.24988 6.38958 6.50546 6.61414 6.70008 6.77371 7.02719 7.42170 7.53710 7.65913 7.82883 8.20713 8.28476 9.06529 9.69512 10.26192 11.19278 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.002477 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.092053 B =11302.319578 C =11745.391682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 H 0.110 0.890 4 C -0.148 4.148 5 C 0.453 3.547 6 F -0.181 7.181 7 F -0.184 7.184 8 F -0.184 7.184 9 C 0.519 3.481 10 O -0.543 6.543 11 N -0.713 5.713 12 C 0.139 3.861 13 C 0.077 3.923 14 C -0.161 4.161 15 C 0.159 3.841 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.385 6.385 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.029 0.971 40 H 0.099 0.901 41 H 0.256 0.744 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 7.924 18.234 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.136 4.136 3 H 0.128 0.872 4 C -0.186 4.186 5 C 0.399 3.601 6 F -0.162 7.162 7 F -0.165 7.165 8 F -0.165 7.165 9 C 0.304 3.696 10 O -0.421 6.421 11 N -0.364 5.364 12 C 0.015 3.985 13 C 0.036 3.964 14 C -0.219 4.219 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.238 0.762 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.553 7.103 18.394 19.883 hybrid contribution -1.059 0.002 -0.710 1.275 sum -3.612 7.105 17.685 19.398 Atomic orbital electron populations 1.22134 0.91810 1.03926 1.03926 1.21266 0.98640 1.01437 0.92306 0.87152 1.22708 1.06262 1.00548 0.89103 1.20609 0.74775 0.78535 0.86165 1.93147 1.30307 1.96410 1.96358 1.93197 1.84668 1.83819 1.54846 1.93184 1.89062 1.38152 1.96115 1.20138 0.80405 0.84623 0.84453 1.90727 1.38163 1.26382 1.86819 1.45993 1.53072 1.31924 1.05401 1.21381 0.99964 0.95667 0.81465 1.22559 0.92611 0.84857 0.96336 1.22204 0.95911 1.02436 1.01352 1.21308 0.98723 0.94691 0.82003 1.43996 1.63313 1.07088 1.17033 1.19123 1.20464 0.91049 1.07764 0.91415 1.25032 0.97745 0.97534 0.99239 1.70000 1.31415 1.05841 1.47396 0.86345 0.81552 0.78366 0.80374 1.20849 1.21522 1.20982 1.21602 0.97325 0.87550 0.95288 1.23037 0.98528 0.93600 0.88010 1.87820 1.68704 1.26053 1.47834 0.91310 0.90197 0.91314 0.86425 0.86271 0.76160 0.90709 0.89873 0.94030 0.90749 0.91828 0.95304 0.88346 0.93345 0.95638 0.92026 0.90167 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.33 37.16 0.31 -0.93 16 2 C -0.11 -1.03 2.63 -91.77 -0.24 -1.27 16 3 H 0.11 0.86 7.52 -51.93 -0.39 0.47 16 4 C -0.15 -1.25 4.19 -26.73 -0.11 -1.36 16 5 C 0.45 3.87 3.11 37.16 0.12 3.99 16 6 F -0.18 -1.57 14.29 2.25 0.03 -1.54 16 7 F -0.18 -1.74 17.32 2.25 0.04 -1.70 16 8 F -0.18 -1.68 16.50 2.25 0.04 -1.64 16 9 C 0.52 6.63 7.15 -10.99 -0.08 6.55 16 10 O -0.54 -8.89 15.92 5.56 0.09 -8.80 16 11 N -0.71 -9.23 5.04 -60.30 -0.30 -9.54 16 12 C 0.14 2.24 4.85 -4.04 -0.02 2.22 16 13 C 0.08 1.37 0.78 -90.47 -0.07 1.30 16 14 C -0.16 -2.60 7.87 37.16 0.29 -2.31 16 15 C 0.16 3.60 4.12 -3.54 -0.01 3.58 16 16 N -0.59 -14.00 2.57 -171.82 -0.44 -14.45 16 17 C -0.25 -6.63 9.66 -15.06 -0.15 -6.77 16 18 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 20 N -0.90 -25.21 11.07 55.49 0.61 -24.59 16 21 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.11 2.17 6.74 -3.53 -0.02 2.14 16 26 C 0.05 0.76 6.60 37.31 0.25 1.01 16 27 O -0.38 -6.78 10.17 -35.23 -0.36 -7.13 16 28 H 0.07 0.50 7.38 -51.93 -0.38 0.11 16 29 H 0.08 0.57 5.93 -51.92 -0.31 0.26 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.12 1.03 7.96 -51.93 -0.41 0.61 16 33 H 0.40 4.52 6.34 -40.82 -0.26 4.26 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.04 0.54 6.58 -51.93 -0.34 0.20 16 37 H 0.07 1.33 6.12 -51.93 -0.32 1.01 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.10 2.46 6.08 -51.92 -0.32 2.14 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.77 6.26 -51.93 -0.32 0.44 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -29.90 364.22 -6.06 -35.96 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.40 Total: 3.93 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 0.17 Total: 8.14 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.13 Total: -48.57 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.27 Total: -15.93 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.11 Total: -4.88 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.90 -6.06 -35.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108180703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.459 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds