Wall clock time and date at job start Tue Mar 31 2020 20:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 C 1.53003 * 109.46733 * 119.99944 * 2 1 3 5 5 C 1.53005 * 109.46903 * 295.16321 * 4 2 1 6 6 F 1.39897 * 109.46957 * 65.53778 * 5 4 2 7 7 F 1.39908 * 109.46888 * 185.53967 * 5 4 2 8 8 F 1.39903 * 109.47337 * 305.53160 * 5 4 2 9 9 C 1.50691 * 109.47111 * 239.99440 * 2 1 3 10 10 O 1.21282 * 120.00421 * 240.00114 * 9 2 1 11 11 N 1.34783 * 119.99699 * 60.00301 * 9 2 1 12 12 C 1.46500 * 119.99764 * 179.97438 * 11 9 2 13 13 C 1.53001 * 109.47305 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.51010 * 305.00620 * 13 12 11 15 15 C 1.53288 * 109.51856 * 184.89640 * 13 12 11 16 16 N 1.47146 * 108.39160 * 187.77245 * 15 13 12 17 17 C 1.36927 * 120.98823 * 230.51853 * 16 15 13 18 18 H 1.08000 * 120.00065 * 154.37072 * 17 16 15 19 19 C 1.38812 * 120.00129 * 334.36782 * 17 16 15 20 20 N 1.31625 * 119.99636 * 343.41790 * 19 17 16 21 21 Si 1.86804 * 120.00246 * 163.41054 * 19 17 16 22 22 H 1.48499 * 109.46631 * 60.00519 * 21 19 17 23 23 H 1.48497 * 109.46902 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47054 * 300.00340 * 21 19 17 25 25 C 1.47160 * 118.03133 * 50.53881 * 16 15 13 26 26 C 1.53301 * 108.38544 * 309.46619 * 25 16 15 27 27 O 1.42963 * 109.50749 * 65.10063 * 13 12 11 28 28 H 1.08998 * 109.46688 * 66.67454 * 1 2 3 29 29 H 1.09009 * 109.46780 * 306.68419 * 1 2 3 30 30 H 1.08991 * 109.47093 * 186.68404 * 1 2 3 31 31 H 1.09000 * 109.47652 * 55.16615 * 4 2 1 32 32 H 1.09007 * 109.47035 * 175.16859 * 4 2 1 33 33 H 0.96992 * 120.00074 * 0.02562 * 11 9 2 34 34 H 1.08999 * 109.47386 * 300.00314 * 12 11 9 35 35 H 1.08999 * 109.47315 * 60.00241 * 12 11 9 36 36 H 1.08993 * 109.47484 * 59.99392 * 14 13 12 37 37 H 1.09005 * 109.46939 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.46505 * 299.99014 * 14 13 12 39 39 H 1.09005 * 109.68158 * 307.50563 * 15 13 12 40 40 H 1.09013 * 109.67920 * 68.01171 * 15 13 12 41 41 H 0.97006 * 119.99547 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.67859 * 69.18762 * 25 16 15 43 43 H 1.08997 * 109.68171 * 189.74298 * 25 16 15 44 44 H 1.08997 * 109.51302 * 172.22210 * 26 25 16 45 45 H 1.09001 * 109.51027 * 292.33296 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6316 0.0669 2.4955 6 9 0.2380 0.0564 2.6180 7 9 2.2038 -0.5224 3.6282 8 9 2.0798 1.3871 2.3801 9 6 2.0323 -0.7105 -1.2303 10 8 2.7296 -1.6966 -1.1190 11 7 1.7067 -0.2500 -2.4545 12 6 2.1955 -0.9404 -3.6506 13 6 1.6850 -0.2197 -4.8999 14 6 0.1601 -0.1104 -4.8395 15 6 2.0927 -1.0090 -6.1491 16 7 1.7571 -0.2061 -7.3357 17 6 1.0411 -0.7441 -8.3715 18 1 0.4549 -0.1030 -9.0131 19 6 1.0688 -2.1136 -8.5968 20 7 2.0105 -2.8518 -8.0485 21 14 -0.2306 -2.9087 -9.6781 22 1 -0.1692 -2.3197 -11.0399 23 1 0.0193 -4.3703 -9.7586 24 1 -1.5748 -2.6681 -9.0948 25 6 2.2141 1.1921 -7.3765 26 6 1.8005 1.8744 -6.0674 27 8 2.2554 1.0897 -4.9624 28 1 -0.3632 0.4069 -0.9437 29 1 -0.3633 0.6140 0.8242 30 1 -0.3633 -1.0206 0.1196 31 1 1.6076 -1.7209 1.2937 32 1 3.1266 -0.7969 1.2071 33 1 1.1495 0.5388 -2.5435 34 1 3.2855 -0.9401 -3.6504 35 1 1.8325 -1.9682 -3.6508 36 1 -0.1290 0.4525 -3.9521 37 1 -0.2029 0.4036 -5.7296 38 1 -0.2742 -1.1091 -4.7937 39 1 3.1653 -1.2019 -6.1276 40 1 1.5504 -1.9542 -6.1794 41 1 2.0300 -3.8088 -8.2063 42 1 3.2989 1.2209 -7.4786 43 1 1.7517 1.7050 -8.2198 44 1 2.2473 2.8673 -6.0174 45 1 0.7146 1.9613 -6.0295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108180703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:04 Heat of formation + Delta-G solvation = -237.364193 kcal Electronic energy + Delta-G solvation = -30896.004060 eV Core-core repulsion = 26112.370562 eV Total energy + Delta-G solvation = -4783.633499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.11341 -48.60891 -48.56146 -41.29311 -40.33844 -36.60953 -36.03903 -35.89679 -33.25298 -33.08490 -30.12001 -29.55385 -28.06905 -27.36087 -25.62615 -24.97358 -23.65887 -22.66867 -21.16984 -20.27267 -19.62501 -19.52010 -18.93002 -18.55205 -17.68867 -17.43888 -16.83744 -16.79297 -16.39626 -16.07174 -15.74658 -15.58060 -15.48547 -15.29740 -15.17052 -15.05284 -14.95018 -14.78327 -14.68353 -14.62462 -14.33666 -13.96403 -13.82214 -13.39872 -13.17751 -13.05409 -12.90990 -12.75601 -12.64524 -12.52510 -12.43681 -12.36225 -12.22446 -12.17328 -11.93940 -11.82753 -11.14889 -10.89610 -10.71284 -10.48476 -10.12306 -8.71619 -7.88876 -5.35326 1.47125 1.48873 1.55770 1.57627 1.68808 2.14744 2.48777 2.79865 2.87879 2.99653 3.10910 3.25765 3.51019 3.58082 3.82882 3.86509 3.97768 4.03603 4.11789 4.21550 4.43209 4.47224 4.51649 4.58547 4.65120 4.66631 4.72800 4.80284 4.82724 4.93941 4.98124 5.06462 5.13387 5.22459 5.26789 5.37185 5.38080 5.55312 5.62189 6.29745 6.38350 6.50989 7.07824 7.18687 7.77237 8.30607 9.16402 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.002477 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.092053 B =11302.319578 C =11745.391682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 H 0.130 0.870 4 C -0.146 4.146 5 C 0.461 3.539 6 F -0.179 7.179 7 F -0.189 7.189 8 F -0.185 7.185 9 C 0.519 3.481 10 O -0.582 6.582 11 N -0.703 5.703 12 C 0.149 3.851 13 C 0.093 3.907 14 C -0.153 4.153 15 C 0.167 3.833 16 N -0.607 5.607 17 C -0.259 4.259 18 H 0.074 0.926 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.277 1.277 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.101 3.899 26 C 0.053 3.947 27 O -0.385 6.385 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.415 0.585 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.055 0.945 39 H -0.009 1.009 40 H 0.069 0.931 41 H 0.250 0.750 42 H 0.011 0.989 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 10.024 19.389 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.126 4.126 3 H 0.147 0.853 4 C -0.185 4.185 5 C 0.407 3.593 6 F -0.161 7.161 7 F -0.171 7.171 8 F -0.167 7.167 9 C 0.306 3.694 10 O -0.462 6.462 11 N -0.355 5.355 12 C 0.024 3.976 13 C 0.052 3.948 14 C -0.210 4.210 15 C 0.040 3.960 16 N -0.331 5.331 17 C -0.389 4.389 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.224 1.224 24 H -0.200 1.200 25 C -0.024 4.024 26 C -0.024 4.024 27 O -0.305 6.305 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.253 0.747 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.009 0.991 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.090 0.910 44 H 0.135 0.865 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.309 9.266 19.562 22.070 hybrid contribution -0.448 -0.600 -1.098 1.329 sum -4.756 8.666 18.463 20.943 Atomic orbital electron populations 1.22162 0.90434 1.04125 1.04932 1.21247 0.99579 1.01681 0.90081 0.85261 1.22683 1.06183 1.00674 0.88952 1.20487 0.74699 0.78295 0.85839 1.93151 1.30207 1.96394 1.96340 1.93189 1.84796 1.83936 1.55151 1.93183 1.89101 1.38278 1.96097 1.20794 0.79389 0.84055 0.85142 1.90718 1.39883 1.28259 1.87345 1.45812 1.53112 1.32068 1.04523 1.21012 0.98805 0.95356 0.82404 1.22200 0.93959 0.84349 0.94334 1.22111 0.93914 1.02510 1.02501 1.21080 0.95943 0.94590 0.84394 1.44256 1.63361 1.08524 1.17006 1.19476 1.20124 0.91340 1.07937 0.90871 1.25773 0.99559 0.98181 1.01030 1.70176 1.33276 1.05518 1.49295 0.85355 0.79459 0.76768 0.78964 1.20239 1.22403 1.20021 1.21828 0.96547 0.85965 0.98109 1.23099 0.99668 0.94289 0.85370 1.87831 1.69046 1.25549 1.48040 0.90335 0.89134 0.91618 0.86251 0.86533 0.74707 0.92579 0.90947 0.90131 0.92121 0.92580 0.99135 0.91287 0.94079 0.97062 0.91020 0.86505 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.33 71.98 0.60 -1.37 16 2 C -0.10 -1.62 2.63 -11.54 -0.03 -1.65 16 3 H 0.13 1.57 7.52 -2.39 -0.02 1.56 16 4 C -0.15 -2.24 4.19 30.60 0.13 -2.11 16 5 C 0.46 6.95 3.11 71.98 0.22 7.18 16 6 F -0.18 -2.70 14.29 44.97 0.64 -2.05 16 7 F -0.19 -3.29 17.32 44.97 0.78 -2.52 16 8 F -0.19 -2.95 16.50 44.97 0.74 -2.20 16 9 C 0.52 12.52 7.15 87.65 0.63 13.15 16 10 O -0.58 -18.92 15.92 -3.03 -0.05 -18.97 16 11 N -0.70 -16.99 5.04 -463.06 -2.33 -19.32 16 12 C 0.15 4.82 4.85 86.38 0.42 5.24 16 13 C 0.09 3.23 0.78 -10.70 -0.01 3.22 16 14 C -0.15 -4.64 7.87 71.98 0.57 -4.07 16 15 C 0.17 7.80 4.12 86.35 0.36 8.15 16 16 N -0.61 -29.13 2.57 -697.53 -1.79 -30.92 16 17 C -0.26 -13.56 9.66 84.04 0.81 -12.75 16 18 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 19 C -0.05 -2.71 4.96 84.86 0.42 -2.29 16 20 N -0.94 -54.36 11.07 21.65 0.24 -54.12 16 21 Si 0.97 43.44 29.59 68.60 2.03 45.47 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C 0.10 3.94 6.74 86.35 0.58 4.52 16 26 C 0.05 1.61 6.60 72.08 0.48 2.09 16 27 O -0.39 -12.83 10.17 -148.98 -1.52 -14.34 16 28 H 0.08 0.84 7.38 -2.39 -0.02 0.82 16 29 H 0.09 0.98 5.93 -2.38 -0.01 0.96 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.12 1.88 7.96 -2.38 -0.02 1.86 16 33 H 0.41 7.94 6.34 -92.71 -0.59 7.35 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 1.80 6.58 -2.39 -0.02 1.78 16 37 H 0.06 2.03 6.12 -2.38 -0.01 2.02 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 40 H 0.07 3.63 6.08 -2.38 -0.01 3.61 16 41 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.07 2.61 7.96 -2.39 -0.02 2.59 16 44 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.06 1.75 6.26 -2.39 -0.01 1.73 16 Total: -1.00 -66.50 364.22 4.35 -62.16 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.44 Total: 17.51 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.17 Total: 19.31 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -3.89 Total: -104.37 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.56 Total: -33.31 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 2.16 Total: -6.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -66.50 4.35 -62.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108180703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.208 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds