Wall clock time and date at job start Tue Mar 31 2020 20:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.31795 * 119.08650 * 299.99902 * 4 2 1 6 6 C 1.32549 * 121.01339 * 180.02562 * 5 4 2 7 7 C 1.38119 * 119.19736 * 359.97438 * 6 5 4 8 8 C 1.39620 * 118.33590 * 0.02562 * 7 6 5 9 9 N 1.38543 * 120.53293 * 180.02562 * 8 7 6 10 10 C 1.46496 * 120.00132 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47334 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.47305 * 294.99990 * 11 10 9 13 13 C 1.52999 * 109.47104 * 174.99958 * 11 10 9 14 14 N 1.46501 * 109.47104 * 55.00276 * 11 10 9 15 15 C 1.34771 * 120.00041 * 205.00255 * 14 11 10 16 16 O 1.21280 * 120.00110 * 359.97438 * 15 14 11 17 17 C 1.50703 * 120.00114 * 180.02562 * 15 14 11 18 18 S 1.80999 * 109.47191 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00213 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99682 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00194 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47566 * 60.00229 * 23 21 19 25 25 H 1.48510 * 109.46970 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47189 * 299.99901 * 23 21 19 27 27 N 1.31755 * 119.08369 * 119.73306 * 4 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.07993 * 120.39848 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.83181 * 179.97438 * 7 6 5 37 37 H 0.97003 * 120.00176 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47095 * 300.00186 * 10 9 8 39 39 H 1.09006 * 109.46895 * 59.99592 * 10 9 8 40 40 H 1.09008 * 109.47178 * 300.00227 * 13 11 10 41 41 H 1.09000 * 109.47471 * 60.00210 * 13 11 10 42 42 H 1.08997 * 109.47347 * 180.02562 * 13 11 10 43 43 H 0.97006 * 119.99765 * 24.99280 * 14 11 10 44 44 H 1.09003 * 109.46836 * 299.99208 * 17 15 14 45 45 H 1.08996 * 109.47531 * 59.99501 * 17 15 14 46 46 H 0.96997 * 120.00479 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7029 -0.2444 2.4185 6 6 2.1239 -0.8389 3.5260 7 6 2.9192 -1.9637 3.4263 8 6 3.2496 -2.4310 2.1528 9 7 4.0441 -3.5556 2.0000 10 6 4.5453 -4.2643 3.1801 11 6 5.3896 -5.4606 2.7363 12 1 4.7564 -6.1791 2.2158 13 6 6.0147 -6.1269 3.9635 14 7 6.4505 -5.0024 1.8359 15 6 6.9878 -5.8534 0.9395 16 8 6.5935 -6.9986 0.8786 17 6 8.0796 -5.3822 0.0137 18 16 8.5891 -6.7460 -1.0617 19 6 9.8353 -5.9387 -2.0102 20 1 10.0668 -4.9001 -1.8251 21 6 10.5202 -6.6376 -2.9945 22 7 10.2385 -7.9035 -3.2198 23 14 11.8419 -5.7818 -3.9995 24 1 12.9135 -5.2936 -3.0948 25 1 12.4175 -6.7394 -4.9779 26 1 11.2450 -4.6320 -4.7255 27 7 2.7842 -1.7830 1.0887 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.8483 -0.4484 4.4944 36 1 3.2773 -2.4686 4.3113 37 1 4.2692 -3.8734 1.1115 38 1 5.1577 -3.5884 3.7770 39 1 3.7039 -4.6155 3.7775 40 1 6.6480 -5.4084 4.4841 41 1 5.2255 -6.4679 4.6335 42 1 6.6166 -6.9789 3.6473 43 1 6.7661 -4.0864 1.8848 44 1 7.7087 -4.5578 -0.5955 45 1 8.9335 -5.0445 0.6009 46 1 10.7173 -8.3921 -3.9074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108254779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:45 Heat of formation + Delta-G solvation = -1.903818 kcal Electronic energy + Delta-G solvation = -25856.188999 eV Core-core repulsion = 22099.668191 eV Total energy + Delta-G solvation = -3756.520808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.25197 -39.64135 -37.53344 -35.80031 -34.73170 -33.02042 -32.45372 -31.56795 -30.30434 -28.66346 -27.40202 -26.68344 -25.51152 -24.62739 -23.66258 -21.92265 -20.65193 -20.44945 -18.38094 -17.79141 -17.60196 -16.67630 -16.27366 -15.67893 -15.47889 -15.33139 -15.00756 -14.90877 -14.82532 -14.39237 -14.30955 -13.88368 -13.76232 -13.33729 -13.23650 -13.05312 -12.95877 -12.60366 -12.39526 -12.18272 -12.05220 -11.87304 -11.57668 -11.39861 -11.22560 -11.16118 -11.07253 -11.05493 -10.79240 -10.76424 -10.01862 -9.85613 -9.50247 -9.37950 -9.12646 -9.06205 -8.46028 -8.28417 -6.53506 -6.24040 -3.95133 0.82570 1.17282 2.58197 2.93981 2.98668 3.22098 3.25549 3.28452 3.61348 3.66034 3.78218 4.11146 4.18051 4.24394 4.45847 4.70776 4.74738 4.89628 4.91037 4.93746 4.98329 5.03222 5.11144 5.12881 5.20843 5.32347 5.40951 5.41124 5.43919 5.57288 5.57714 5.60423 5.72123 5.81026 5.83223 5.92470 5.97320 6.02828 6.09051 6.10799 6.45971 6.51121 6.96422 7.26796 7.55078 7.57449 8.10270 8.32552 8.49070 9.21286 10.83318 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.002285 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.491100 B =12251.178439 C =14150.774269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 C -0.139 4.139 4 C 0.369 3.631 5 N -0.558 5.558 6 C 0.177 3.823 7 C -0.302 4.302 8 C 0.441 3.559 9 N -0.709 5.709 10 C 0.118 3.882 11 C 0.133 3.867 12 H 0.097 0.903 13 C -0.161 4.161 14 N -0.738 5.738 15 C 0.535 3.465 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 N -0.575 5.575 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.163 0.837 36 H 0.140 0.860 37 H 0.413 0.587 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.399 0.601 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.007 15.676 15.840 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.049 4.049 3 C -0.197 4.197 4 C 0.100 3.900 5 N -0.277 5.277 6 C 0.014 3.986 7 C -0.330 4.330 8 C 0.197 3.803 9 N -0.342 5.342 10 C -0.007 4.007 11 C 0.028 3.972 12 H 0.115 0.885 13 C -0.220 4.220 14 N -0.393 5.393 15 C 0.321 3.679 16 O -0.387 6.387 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.299 5.299 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.181 0.819 36 H 0.158 0.842 37 H 0.250 0.750 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.233 0.767 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.874 13.902 15.038 27.183 hybrid contribution 2.022 1.583 0.013 2.568 sum -15.852 15.485 15.052 26.789 Atomic orbital electron populations 1.21769 0.93097 1.02071 1.02725 1.19975 0.96501 0.95807 0.92611 1.21770 1.01002 0.94193 1.02721 1.22823 0.87262 0.86809 0.93149 1.68174 1.26989 1.34084 0.98454 1.22866 0.88894 0.89434 0.97385 1.22122 1.09718 1.03688 0.97520 1.18525 0.86395 0.86063 0.89358 1.44544 1.52576 1.26860 1.10199 1.21848 0.97821 0.93450 0.87562 1.21094 0.89064 0.95160 0.91917 0.88538 1.22123 1.01520 1.01722 0.96634 1.46133 1.40121 1.15127 1.37930 1.20342 0.82444 0.85415 0.79712 1.90711 1.60750 1.18174 1.69091 1.23540 0.98860 1.06824 1.01275 1.85380 1.47338 1.11054 1.39432 1.22817 1.23278 0.99731 1.22652 0.90988 1.24988 0.97205 0.94913 0.96439 1.70000 1.40423 1.08187 1.31674 0.86224 0.80783 0.79093 0.79405 1.19940 1.20781 1.19906 1.67804 1.17352 1.11672 1.33041 0.92878 0.91694 0.91455 0.88709 0.91456 0.92822 0.91688 0.81949 0.84243 0.74954 0.90868 0.90087 0.92146 0.91463 0.90850 0.76689 0.89203 0.89218 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.09 37.16 0.34 -0.75 16 2 C -0.03 -0.26 3.25 -91.77 -0.30 -0.56 16 3 C -0.14 -1.11 9.09 37.16 0.34 -0.77 16 4 C 0.37 4.20 6.34 -157.23 -1.00 3.21 16 5 N -0.56 -5.95 9.80 -10.81 -0.11 -6.05 16 6 C 0.18 1.51 11.29 -17.29 -0.20 1.32 16 7 C -0.30 -2.58 9.40 -39.11 -0.37 -2.94 16 8 C 0.44 4.73 7.71 -154.77 -1.19 3.54 16 9 N -0.71 -6.66 5.54 -60.27 -0.33 -6.99 16 10 C 0.12 0.82 4.48 -4.05 -0.02 0.80 16 11 C 0.13 1.27 2.73 -67.93 -0.19 1.08 16 12 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 13 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 14 N -0.74 -8.62 4.52 -53.81 -0.24 -8.86 16 15 C 0.53 9.25 7.81 -10.99 -0.09 9.16 16 16 O -0.51 -10.91 15.52 5.56 0.09 -10.83 16 17 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 18 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 19 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 N -0.58 -7.17 10.34 -9.96 -0.10 -7.27 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 31 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.07 0.55 8.01 -51.93 -0.42 0.14 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 0.82 6.87 -52.49 -0.36 0.46 16 37 H 0.41 4.48 8.26 -40.82 -0.34 4.14 16 38 H 0.07 0.41 7.97 -51.93 -0.41 0.00 16 39 H 0.08 0.45 7.97 -51.93 -0.41 0.04 16 40 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -35.01 401.04 -10.35 -45.35 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.29 Total: 4.00 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.89 Total: -2.63 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.05 Total: -54.49 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.01 -10.35 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108254779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.451 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds