Wall clock time and date at job start Tue Mar 31 2020 20:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.31795 * 119.08650 * 299.99902 * 4 2 1 6 6 C 1.32549 * 121.01339 * 180.02562 * 5 4 2 7 7 C 1.38119 * 119.19736 * 359.97438 * 6 5 4 8 8 C 1.39620 * 118.33590 * 0.02562 * 7 6 5 9 9 N 1.38543 * 120.53293 * 180.02562 * 8 7 6 10 10 C 1.46496 * 120.00132 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47334 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.47305 * 294.99990 * 11 10 9 13 13 C 1.52999 * 109.47104 * 174.99958 * 11 10 9 14 14 N 1.46501 * 109.47104 * 55.00276 * 11 10 9 15 15 C 1.34771 * 120.00041 * 205.00255 * 14 11 10 16 16 O 1.21280 * 120.00110 * 359.97438 * 15 14 11 17 17 C 1.50703 * 120.00114 * 180.02562 * 15 14 11 18 18 S 1.80999 * 109.47191 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00213 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99682 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00194 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47566 * 60.00229 * 23 21 19 25 25 H 1.48510 * 109.46970 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47189 * 299.99901 * 23 21 19 27 27 N 1.31755 * 119.08369 * 119.73306 * 4 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.07993 * 120.39848 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.83181 * 179.97438 * 7 6 5 37 37 H 0.97003 * 120.00176 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47095 * 300.00186 * 10 9 8 39 39 H 1.09006 * 109.46895 * 59.99592 * 10 9 8 40 40 H 1.09008 * 109.47178 * 300.00227 * 13 11 10 41 41 H 1.09000 * 109.47471 * 60.00210 * 13 11 10 42 42 H 1.08997 * 109.47347 * 180.02562 * 13 11 10 43 43 H 0.97006 * 119.99765 * 24.99280 * 14 11 10 44 44 H 1.09003 * 109.46836 * 299.99208 * 17 15 14 45 45 H 1.08996 * 109.47531 * 59.99501 * 17 15 14 46 46 H 0.96997 * 120.00479 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7029 -0.2444 2.4185 6 6 2.1239 -0.8389 3.5260 7 6 2.9192 -1.9637 3.4263 8 6 3.2496 -2.4310 2.1528 9 7 4.0441 -3.5556 2.0000 10 6 4.5453 -4.2643 3.1801 11 6 5.3896 -5.4606 2.7363 12 1 4.7564 -6.1791 2.2158 13 6 6.0147 -6.1269 3.9635 14 7 6.4505 -5.0024 1.8359 15 6 6.9878 -5.8534 0.9395 16 8 6.5935 -6.9986 0.8786 17 6 8.0796 -5.3822 0.0137 18 16 8.5891 -6.7460 -1.0617 19 6 9.8353 -5.9387 -2.0102 20 1 10.0668 -4.9001 -1.8251 21 6 10.5202 -6.6376 -2.9945 22 7 10.2385 -7.9035 -3.2198 23 14 11.8419 -5.7818 -3.9995 24 1 12.9135 -5.2936 -3.0948 25 1 12.4175 -6.7394 -4.9779 26 1 11.2450 -4.6320 -4.7255 27 7 2.7842 -1.7830 1.0887 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.8483 -0.4484 4.4944 36 1 3.2773 -2.4686 4.3113 37 1 4.2692 -3.8734 1.1115 38 1 5.1577 -3.5884 3.7770 39 1 3.7039 -4.6155 3.7775 40 1 6.6480 -5.4084 4.4841 41 1 5.2255 -6.4679 4.6335 42 1 6.6166 -6.9789 3.6473 43 1 6.7661 -4.0864 1.8848 44 1 7.7087 -4.5578 -0.5955 45 1 8.9335 -5.0445 0.6009 46 1 10.7173 -8.3921 -3.9074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108254779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:44 Heat of formation + Delta-G solvation = -25.922145 kcal Electronic energy + Delta-G solvation = -25857.230512 eV Core-core repulsion = 22099.668191 eV Total energy + Delta-G solvation = -3757.562321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96733 -40.86796 -38.41718 -36.61715 -35.54531 -34.60467 -33.86430 -32.63884 -31.01704 -30.03537 -28.02964 -27.67701 -27.34501 -25.34188 -24.34151 -22.88107 -21.64651 -21.32994 -19.92056 -19.00266 -18.27560 -17.97767 -17.36391 -16.89580 -16.48324 -16.30501 -16.25593 -16.02061 -15.87221 -15.75482 -15.02979 -14.88331 -14.70388 -14.47406 -14.36381 -14.04065 -13.91964 -13.69093 -13.29935 -13.18939 -12.98825 -12.96164 -12.88537 -12.67213 -12.62048 -12.26644 -12.09573 -11.96721 -11.84018 -11.75727 -11.44883 -11.14898 -10.98047 -10.70707 -10.30685 -10.22347 -10.13302 -9.13805 -8.68439 -8.36512 -6.14531 0.13225 0.45996 1.24646 1.42066 1.44606 1.54368 1.57474 1.90363 2.23468 2.27277 2.93749 2.97528 3.10326 3.29520 3.44503 3.54540 3.81206 3.94458 4.04188 4.10582 4.22382 4.23590 4.24073 4.29610 4.41580 4.47800 4.52580 4.58496 4.67385 4.74942 4.77431 4.83377 4.91816 4.96740 4.99360 5.11207 5.24075 5.33417 5.33685 5.39467 5.42745 5.45643 5.82730 6.17506 6.22850 6.42914 6.51481 7.04782 7.20109 7.37282 8.72368 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.002285 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.491100 B =12251.178439 C =14150.774269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 C -0.131 4.131 4 C 0.352 3.648 5 N -0.571 5.571 6 C 0.169 3.831 7 C -0.295 4.295 8 C 0.422 3.578 9 N -0.713 5.713 10 C 0.127 3.873 11 C 0.134 3.866 12 H 0.073 0.927 13 C -0.156 4.156 14 N -0.711 5.711 15 C 0.538 3.462 16 O -0.560 6.560 17 C -0.132 4.132 18 S -0.148 6.148 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.997 3.003 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.609 5.609 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.198 0.802 36 H 0.171 0.829 37 H 0.403 0.597 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.037 0.963 43 H 0.414 0.586 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.088 18.248 17.816 30.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 C -0.189 4.189 4 C 0.083 3.917 5 N -0.290 5.290 6 C 0.007 3.993 7 C -0.322 4.322 8 C 0.178 3.822 9 N -0.344 5.344 10 C 0.003 3.997 11 C 0.029 3.971 12 H 0.091 0.909 13 C -0.214 4.214 14 N -0.366 5.366 15 C 0.324 3.676 16 O -0.438 6.438 17 C -0.283 4.283 18 S 0.079 5.921 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.186 1.186 25 H -0.203 1.203 26 H -0.188 1.188 27 N -0.333 5.333 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.215 0.785 36 H 0.189 0.811 37 H 0.238 0.762 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.056 0.944 43 H 0.250 0.750 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.970 16.522 17.077 29.792 hybrid contribution 1.952 0.820 -0.474 2.169 sum -16.018 17.342 16.604 28.862 Atomic orbital electron populations 1.21708 0.92123 1.01572 1.03457 1.20060 0.97298 0.96215 0.91751 1.21708 1.00191 0.93535 1.03445 1.23132 0.87556 0.86959 0.94074 1.68214 1.27425 1.34575 0.98815 1.23517 0.88326 0.89346 0.98095 1.22425 1.08866 1.03413 0.97513 1.18850 0.86871 0.86421 0.90057 1.44651 1.52631 1.26800 1.10347 1.21940 0.98387 0.92455 0.86933 1.21244 0.88232 0.96169 0.91472 0.90921 1.22074 1.02160 1.00777 0.96436 1.45868 1.39459 1.14882 1.36363 1.19961 0.82097 0.85256 0.80263 1.90702 1.62227 1.20208 1.70615 1.23383 1.00433 1.03825 1.00655 1.85528 1.48147 1.16419 1.41972 1.23161 1.23372 1.00121 1.22929 0.90086 1.26115 0.99744 0.95591 0.97662 1.70166 1.41923 1.10044 1.32548 0.85024 0.77511 0.77964 0.77631 1.18617 1.20311 1.18781 1.67777 1.18456 1.12604 1.34505 0.93941 0.89933 0.91662 0.89687 0.91654 0.93936 0.89959 0.78540 0.81109 0.76187 0.88276 0.87721 0.90175 0.88806 0.94377 0.74966 0.87693 0.87368 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.09 71.98 0.65 -1.33 16 2 C -0.03 -0.61 3.25 -11.54 -0.04 -0.64 16 3 C -0.13 -2.01 9.09 71.98 0.65 -1.36 16 4 C 0.35 7.89 6.34 138.76 0.88 8.77 16 5 N -0.57 -11.43 9.80 -188.11 -1.84 -13.27 16 6 C 0.17 2.45 11.29 84.56 0.95 3.40 16 7 C -0.29 -4.11 9.40 22.58 0.21 -3.90 16 8 C 0.42 8.36 7.71 133.16 1.03 9.39 16 9 N -0.71 -12.10 5.54 -344.59 -1.91 -14.01 16 10 C 0.13 1.33 4.48 86.38 0.39 1.72 16 11 C 0.13 2.31 2.73 44.99 0.12 2.43 16 12 H 0.07 1.67 7.58 -2.39 -0.02 1.65 16 13 C -0.16 -2.35 9.48 71.98 0.68 -1.67 16 14 N -0.71 -15.60 4.52 -442.55 -2.00 -17.60 16 15 C 0.54 18.66 7.81 87.66 0.68 19.34 16 16 O -0.56 -24.62 15.52 -3.03 -0.05 -24.67 16 17 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 18 S -0.15 -8.15 20.57 -56.49 -1.16 -9.32 16 19 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 23 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 27 N -0.61 -15.02 10.34 -185.43 -1.92 -16.93 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.01 8.01 -2.38 -0.02 0.99 16 31 H 0.08 1.68 8.09 -2.39 -0.02 1.66 16 32 H 0.06 1.02 8.01 -2.39 -0.02 1.00 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.17 1.17 6.87 -2.91 -0.02 1.15 16 37 H 0.40 8.47 8.26 -92.71 -0.77 7.71 16 38 H 0.10 0.62 7.97 -2.39 -0.02 0.60 16 39 H 0.10 0.71 7.97 -2.38 -0.02 0.70 16 40 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.41 6.90 8.60 -92.70 -0.80 6.10 16 44 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 45 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 46 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -80.72 401.04 0.64 -80.08 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.57 Total: 23.68 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 7.77 Total: 2.03 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -7.38 Total: -117.54 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.32 kcal Total: -80.72 0.64 -80.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108254779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.155 kcal (2) G-P(sol) polarization free energy of solvation -80.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds