Wall clock time and date at job start Tue Mar 31 2020 20:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00339 * 2 1 4 4 C 1.53002 * 109.47276 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47016 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47766 * 54.99938 * 5 4 3 7 7 C 1.52999 * 109.47080 * 294.99647 * 5 4 3 8 8 C 1.50703 * 109.46941 * 175.00079 * 5 4 3 9 9 O 1.21279 * 120.00054 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99951 * 179.97438 * 8 5 4 11 11 C 1.48142 * 127.83722 * 179.97438 * 10 8 5 12 12 C 1.54397 * 104.61412 * 219.60489 * 11 10 8 13 13 H 1.09002 * 110.34226 * 95.00254 * 12 11 10 14 14 C 1.53001 * 110.34022 * 217.26220 * 12 11 10 15 15 F 1.39897 * 109.47041 * 175.53990 * 14 12 11 16 16 F 1.39907 * 109.46916 * 295.53260 * 14 12 11 17 17 F 1.39899 * 109.47665 * 55.53160 * 14 12 11 18 18 C 1.54287 * 104.95976 * 336.12786 * 12 11 10 19 19 H 1.08991 * 110.43298 * 241.08483 * 18 12 11 20 20 N 1.46499 * 110.34031 * 118.87340 * 18 12 11 21 21 C 1.36931 * 120.00122 * 158.00987 * 20 18 12 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21 27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21 28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21 29 29 C 1.48148 * 127.83782 * 359.97237 * 10 8 5 30 30 H 1.08994 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46820 * 300.00253 * 1 2 3 32 32 H 1.09005 * 109.46569 * 59.99904 * 1 2 3 33 33 H 1.09005 * 109.47551 * 59.99771 * 3 2 1 34 34 H 1.09000 * 109.47427 * 299.99920 * 3 2 1 35 35 H 1.08994 * 109.46948 * 60.00314 * 4 3 2 36 36 H 1.09003 * 109.46968 * 299.99620 * 4 3 2 37 37 H 1.08999 * 109.47074 * 179.97438 * 7 5 4 38 38 H 1.08999 * 109.47570 * 300.00628 * 7 5 4 39 39 H 1.09000 * 109.47177 * 60.00246 * 7 5 4 40 40 H 1.08999 * 110.41048 * 338.38341 * 11 10 8 41 41 H 1.08994 * 110.41171 * 100.70295 * 11 10 8 42 42 H 0.97001 * 119.99790 * 338.00504 * 20 18 12 43 43 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 44 44 H 1.08999 * 110.40547 * 21.60929 * 29 10 8 45 45 H 1.09000 * 110.50546 * 259.23127 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5822 0.0013 6 1 3.7669 3.1538 0.8430 7 6 3.8091 3.2964 -1.3061 8 6 5.6552 2.4653 0.1257 9 8 6.1735 1.3718 0.2055 10 7 6.4184 3.5760 0.1473 11 6 7.8927 3.6635 0.2631 12 6 8.1393 4.8690 1.1957 13 1 8.2611 4.5328 2.2254 14 6 9.3738 5.6498 0.7404 15 9 9.5216 6.7925 1.5338 16 9 10.5095 4.8429 0.8688 17 9 9.2192 6.0278 -0.5977 18 6 6.8737 5.7412 1.0624 19 1 7.1299 6.7266 0.6734 20 7 6.2018 5.8653 2.3583 21 6 5.3531 6.9141 2.5919 22 1 5.1786 7.6497 1.8206 23 6 4.7168 7.0320 3.8199 24 7 4.9290 6.1352 4.7597 25 14 3.5530 8.4585 4.1358 26 1 3.0021 8.3528 5.5108 27 1 4.2908 9.7396 3.9954 28 1 2.4410 8.4173 3.1525 29 6 5.9732 4.9864 0.0606 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6888 1.8463 -0.8900 35 1 3.8575 0.6435 -0.8891 36 1 3.8568 0.6438 0.8909 37 1 4.2520 4.2923 -1.3054 38 1 4.2000 2.7249 -2.1479 39 1 2.7261 3.3809 -1.3961 40 1 8.2939 2.7520 0.7061 41 1 8.3410 3.8392 -0.7147 42 1 6.3582 5.2043 3.0508 43 1 4.4841 6.2173 5.6178 44 1 4.9261 5.0729 0.3506 45 1 6.1204 5.3718 -0.9483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112209824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:57 Heat of formation + Delta-G solvation = -242.659696 kcal Electronic energy + Delta-G solvation = -31202.268965 eV Core-core repulsion = 26418.405836 eV Total energy + Delta-G solvation = -4783.863129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.12467 -48.59857 -48.57821 -41.36414 -39.32232 -38.72165 -35.92986 -35.81239 -33.52371 -32.27493 -30.16534 -29.13845 -27.23754 -27.17522 -26.11612 -25.37894 -23.81485 -22.25154 -21.72447 -20.33618 -19.57378 -19.38577 -19.16900 -18.31994 -18.11147 -17.50949 -17.08571 -16.76713 -16.56835 -16.15764 -15.86208 -15.60916 -15.53039 -15.38792 -15.18911 -15.13403 -15.00675 -14.82097 -14.72442 -14.55494 -14.35698 -13.98309 -13.62113 -13.43755 -13.32558 -13.05662 -12.83421 -12.74368 -12.62934 -12.59497 -12.49399 -12.22990 -12.13969 -12.05900 -11.91357 -11.87231 -11.74465 -11.07338 -10.82505 -10.57727 -9.90498 -9.02905 -7.93161 -5.24009 1.49331 1.52840 1.54203 1.59787 1.63791 1.93288 2.55503 2.74103 2.82216 2.85678 2.98094 3.38807 3.43472 3.66582 3.72322 3.86153 3.89896 3.99383 4.02121 4.21091 4.22569 4.30567 4.39414 4.47265 4.51764 4.54382 4.55895 4.58545 4.73562 4.78763 4.84085 4.86227 4.89061 4.96273 5.00284 5.17305 5.24538 5.34431 5.56411 6.23291 6.24876 6.47024 7.06756 7.33975 8.00623 8.25287 9.29260 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.004446 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.370006 B = 6296.566022 C = 9092.456964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.063 3.937 4 C -0.091 4.091 5 C -0.098 4.098 6 H 0.098 0.902 7 C -0.145 4.145 8 C 0.540 3.460 9 O -0.583 6.583 10 N -0.611 5.611 11 C 0.118 3.882 12 C -0.157 4.157 13 H 0.116 0.884 14 C 0.473 3.527 15 F -0.185 7.185 16 F -0.182 7.182 17 F -0.175 7.175 18 C 0.172 3.828 19 H 0.081 0.919 20 N -0.722 5.722 21 C -0.240 4.240 22 H 0.087 0.913 23 C -0.065 4.065 24 N -0.967 5.967 25 Si 0.966 3.034 26 H -0.304 1.304 27 H -0.280 1.280 28 H -0.272 1.272 29 C 0.081 3.919 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.090 0.910 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -4.164 -14.430 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.129 4.129 5 C -0.119 4.119 6 H 0.116 0.884 7 C -0.202 4.202 8 C 0.331 3.669 9 O -0.463 6.463 10 N -0.343 5.343 11 C -0.005 4.005 12 C -0.179 4.179 13 H 0.134 0.866 14 C 0.418 3.582 15 F -0.166 7.166 16 F -0.164 7.164 17 F -0.156 7.156 18 C 0.061 3.939 19 H 0.099 0.901 20 N -0.362 5.362 21 C -0.371 4.371 22 H 0.105 0.895 23 C -0.257 4.257 24 N -0.616 5.616 25 Si 0.796 3.204 26 H -0.231 1.231 27 H -0.206 1.206 28 H -0.198 1.198 29 C -0.044 4.044 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.206 0.794 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.229 -4.806 -14.419 15.248 hybrid contribution -0.270 0.762 1.206 1.452 sum -1.499 -4.043 -13.213 13.899 Atomic orbital electron populations 1.22938 0.79372 1.03835 1.00958 1.87827 1.21625 1.28835 1.95643 1.22603 0.92705 0.84481 1.01494 1.21159 0.93657 0.95049 1.03028 1.21115 0.89685 0.98519 1.02606 0.88368 1.21965 1.03756 1.00712 0.93806 1.20648 0.89805 0.81995 0.74467 1.90662 1.75720 1.27384 1.52572 1.48824 1.06957 1.06853 1.71667 1.22189 0.82201 0.96657 0.99460 1.23699 0.93034 0.97443 1.03712 0.86593 1.20072 0.84891 0.78132 0.75106 1.93216 1.96196 1.52911 1.74322 1.93187 1.54427 1.73069 1.95676 1.93170 1.95639 1.91880 1.34915 1.21265 0.88529 0.96479 0.87614 0.90127 1.42545 1.52544 1.29558 1.11511 1.19553 1.17274 1.02335 0.97931 0.89512 1.25463 1.02778 1.00938 0.96562 1.69811 1.48319 1.37987 1.05532 0.85328 0.79278 0.79518 0.76306 1.23119 1.20647 1.19821 1.23562 1.01276 0.79100 1.00429 0.88516 0.93612 0.92586 0.93057 0.90710 0.91053 0.92957 0.90723 0.91651 0.89462 0.89409 0.88006 0.79399 0.94163 0.89121 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.39 10.70 -148.98 -1.59 -11.98 16 3 C 0.06 1.42 5.69 71.98 0.41 1.83 16 4 C -0.09 -2.41 4.40 30.60 0.13 -2.28 16 5 C -0.10 -2.55 2.06 -11.54 -0.02 -2.58 16 6 H 0.10 2.76 7.95 -2.39 -0.02 2.74 16 7 C -0.15 -2.77 8.70 71.98 0.63 -2.14 16 8 C 0.54 17.20 7.27 87.66 0.64 17.84 16 9 O -0.58 -22.43 16.19 -3.03 -0.05 -22.48 16 10 N -0.61 -17.61 3.31 -807.90 -2.67 -20.28 16 11 C 0.12 3.13 6.38 86.54 0.55 3.68 16 12 C -0.16 -4.52 2.84 -9.88 -0.03 -4.55 16 13 H 0.12 3.68 7.64 -2.39 -0.02 3.66 16 14 C 0.47 12.74 2.53 71.98 0.18 12.93 16 15 F -0.19 -5.83 16.93 44.97 0.76 -5.07 16 16 F -0.18 -4.77 17.17 44.97 0.77 -3.99 16 17 F -0.17 -4.27 16.05 44.97 0.72 -3.55 16 18 C 0.17 5.56 2.99 45.91 0.14 5.70 16 19 H 0.08 2.57 7.37 -2.39 -0.02 2.56 16 20 N -0.72 -31.42 5.14 -318.62 -1.64 -33.06 16 21 C -0.24 -11.61 9.97 84.03 0.84 -10.77 16 22 H 0.09 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 24 N -0.97 -55.47 13.06 21.65 0.28 -55.18 16 25 Si 0.97 42.58 29.55 68.60 2.03 44.60 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 C 0.08 2.20 4.97 86.54 0.43 2.63 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.07 1.31 6.57 -2.39 -0.02 1.30 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.65 7.96 -2.39 -0.02 1.63 16 37 H 0.07 1.37 5.34 -2.39 -0.01 1.36 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.33 6.57 -2.39 -0.02 1.31 16 40 H 0.09 2.46 7.88 -2.39 -0.02 2.44 16 41 H 0.10 2.25 7.22 -2.39 -0.02 2.24 16 42 H 0.37 18.29 7.50 -92.71 -0.70 17.59 16 43 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 44 H 0.09 2.66 6.48 -2.39 -0.02 2.65 16 45 H 0.10 2.13 8.01 -2.39 -0.02 2.11 16 Total: -1.00 -63.90 375.19 4.55 -59.35 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.33 Total: 30.60 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 5.61 Total: 21.04 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.02 Total: -108.52 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.64 Total: -34.46 kcal Atomic # 9 Polarization: -14.87 SS G_CDS: 2.26 Total: -12.61 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -63.90 4.55 -59.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112209824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.310 kcal (2) G-P(sol) polarization free energy of solvation -63.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds