Wall clock time and date at job start Tue Mar 31 2020 21:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99748 * 2 1 4 4 C 1.53006 * 109.46782 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47115 * 64.99893 * 4 3 2 6 6 C 1.42900 * 113.99768 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46841 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46987 * 185.00174 * 7 6 5 9 9 C 1.53004 * 109.47020 * 304.99913 * 7 6 5 10 10 N 1.46503 * 109.47277 * 64.99930 * 7 6 5 11 11 C 1.34769 * 119.99972 * 155.00006 * 10 7 6 12 12 O 1.21596 * 120.00054 * 359.97438 * 11 10 7 13 13 N 1.34778 * 120.00159 * 179.97438 * 11 10 7 14 14 C 1.40026 * 120.00015 * 174.74305 * 13 11 10 15 15 C 1.38904 * 120.00288 * 326.14909 * 14 13 11 16 16 C 1.38015 * 119.99761 * 179.79049 * 15 14 13 17 17 C 1.38899 * 120.00068 * 0.46148 * 16 15 14 18 18 O 1.35779 * 119.99760 * 179.76807 * 17 16 15 19 19 C 1.34816 * 116.99769 * 185.94165 * 18 17 16 20 20 H 1.08000 * 120.00555 * 5.41563 * 19 18 17 21 21 C 1.38636 * 120.00116 * 185.41154 * 19 18 17 22 22 N 1.31573 * 119.99729 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00053 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47154 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47216 * 120.00592 * 23 21 19 26 26 H 1.48504 * 109.46920 * 240.00062 * 23 21 19 27 27 C 1.38904 * 120.00387 * 359.79364 * 17 16 15 28 28 C 1.38012 * 120.00036 * 359.97174 * 27 17 16 29 29 H 1.09005 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47845 * 300.00393 * 1 2 3 31 31 H 1.09002 * 109.47245 * 60.00383 * 1 2 3 32 32 H 1.08999 * 109.46970 * 59.99750 * 3 2 1 33 33 H 1.08993 * 109.46790 * 299.99463 * 3 2 1 34 34 H 1.09000 * 109.47221 * 304.99784 * 4 3 2 35 35 H 1.09002 * 109.46806 * 184.99664 * 4 3 2 36 36 H 1.08997 * 109.47190 * 60.00393 * 6 5 4 37 37 H 1.08997 * 109.46987 * 299.99439 * 6 5 4 38 38 H 1.08995 * 109.46873 * 180.02562 * 9 7 6 39 39 H 1.08997 * 109.47172 * 300.00267 * 9 7 6 40 40 H 1.08999 * 109.47027 * 60.00286 * 9 7 6 41 41 H 0.96999 * 119.99432 * 335.27411 * 10 7 6 42 42 H 0.96997 * 119.99676 * 354.74829 * 13 11 10 43 43 H 1.08001 * 120.00573 * 0.02562 * 15 14 13 44 44 H 1.08003 * 119.99782 * 180.23148 * 16 15 14 45 45 H 0.97000 * 120.00353 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.00148 * 179.97438 * 27 17 16 47 47 H 1.07993 * 120.00292 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4197 -1.3220 7 6 5.7267 -0.2340 -2.6617 8 1 6.7969 -0.4368 -2.7025 9 6 4.9533 -1.5466 -2.8026 10 7 5.3588 0.6694 -3.7548 11 6 5.9854 0.5778 -4.9445 12 8 6.8565 -0.2542 -5.1105 13 7 5.6466 1.4086 -5.9503 14 6 6.3705 1.3886 -7.1488 15 6 7.7341 1.1245 -7.1323 16 6 8.4467 1.1006 -8.3140 17 6 7.8021 1.3502 -9.5188 18 8 8.5041 1.3313 -10.6809 19 6 7.8475 1.7016 -11.7986 20 1 6.8377 2.0786 -11.7319 21 6 8.4687 1.5987 -13.0338 22 7 9.6989 1.1391 -13.1151 23 14 7.5592 2.1125 -14.5824 24 1 6.2000 2.5904 -14.2226 25 1 8.3065 3.2047 -15.2559 26 1 7.4479 0.9500 -15.4997 27 6 6.4395 1.6195 -9.5349 28 6 5.7260 1.6386 -8.3537 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6884 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1766 0.0902 36 1 5.7362 -0.2121 -0.5074 37 1 5.8631 1.3959 -1.2602 38 1 5.1990 -2.0125 -3.7568 39 1 5.2270 -2.2187 -1.9893 40 1 3.8831 -1.3438 -2.7618 41 1 4.6670 1.3360 -3.6210 42 1 4.9014 2.0202 -5.8439 43 1 8.2361 0.9341 -6.1952 44 1 9.5062 0.8916 -8.3016 45 1 10.1337 1.0674 -13.9792 46 1 5.9385 1.8139 -10.4716 47 1 4.6667 1.8485 -8.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116148478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:54 Heat of formation + Delta-G solvation = -115.356243 kcal Electronic energy + Delta-G solvation = -28221.214564 eV Core-core repulsion = 23984.728467 eV Total energy + Delta-G solvation = -4236.486097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.34515 -39.09130 -38.65863 -37.81626 -36.63133 -35.14560 -33.90071 -32.17050 -31.34376 -30.20267 -30.12918 -27.55247 -26.89300 -26.43087 -25.27024 -23.04072 -22.57350 -22.02877 -20.88277 -20.41650 -18.56000 -17.79884 -17.51867 -17.23119 -17.18410 -16.56414 -15.93842 -15.86226 -15.71593 -15.22097 -14.75185 -14.60104 -14.49327 -14.18087 -13.82521 -13.65478 -13.48904 -13.39022 -12.78259 -12.73039 -12.66127 -12.49945 -12.38079 -12.02764 -11.78910 -11.72416 -11.51909 -11.48260 -11.36132 -11.14017 -11.03124 -10.61531 -10.40207 -10.16616 -10.06131 -9.90287 -9.59758 -9.19187 -9.09495 -8.64755 -8.13222 -6.82929 -6.39334 -3.97150 2.23195 2.30214 2.77384 3.14235 3.16685 3.17462 3.22428 3.29944 3.43763 4.01090 4.31285 4.44026 4.58499 4.65131 4.67446 4.75033 4.84901 4.88093 4.95265 4.97789 5.02170 5.15922 5.21152 5.25937 5.29187 5.37795 5.38681 5.61523 5.64897 5.83585 5.89763 6.20622 6.24820 6.27969 6.33839 6.48253 6.63264 6.75496 6.79565 6.89340 6.99580 7.20199 7.28976 7.34233 7.49686 7.86990 8.05285 8.14916 8.77173 9.06296 9.78145 10.78981 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.001715 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.586585 B =16319.043424 C =16992.533795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.375 6.375 6 C 0.053 3.947 7 C 0.168 3.832 8 H 0.101 0.899 9 C -0.160 4.160 10 N -0.740 5.740 11 C 0.699 3.301 12 O -0.576 6.576 13 N -0.676 5.676 14 C 0.059 3.941 15 C -0.068 4.068 16 C -0.176 4.176 17 C 0.144 3.856 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.217 4.217 28 C -0.094 4.094 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.397 0.603 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.269 0.731 46 H 0.131 0.869 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.207 2.440 27.511 32.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.294 6.294 6 C -0.024 4.024 7 C 0.062 3.938 8 H 0.118 0.882 9 C -0.219 4.219 10 N -0.397 5.397 11 C 0.400 3.600 12 O -0.453 6.453 13 N -0.324 5.324 14 C -0.034 4.034 15 C -0.088 4.088 16 C -0.196 4.196 17 C 0.091 3.909 18 O -0.083 6.083 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.237 4.237 28 C -0.115 4.115 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.231 0.769 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.079 0.921 46 H 0.148 0.852 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.000 1.334 27.016 30.930 hybrid contribution -1.383 1.186 -0.415 1.869 sum -16.383 2.520 26.601 31.342 Atomic orbital electron populations 1.22754 0.80976 1.02961 0.99882 1.87968 1.19647 1.27195 1.95371 1.22562 0.92372 0.85609 1.00897 1.22515 0.93361 0.97561 0.87905 1.87963 1.21675 1.81999 1.37801 1.22866 0.82028 1.00101 0.97413 1.20835 1.00436 0.89407 0.83101 0.88163 1.22093 1.01306 0.96148 1.02310 1.45114 1.43133 1.40028 1.11414 1.15967 0.82170 0.81503 0.80356 1.90943 1.34451 1.38236 1.81694 1.42342 1.35750 1.40733 1.13527 1.17027 0.90848 1.11844 0.83638 1.20621 0.91850 0.98648 0.97703 1.20122 1.00042 1.09679 0.89769 1.19407 0.90388 0.93321 0.87833 1.84006 1.37240 1.74684 1.12332 1.21344 0.99854 1.42779 0.82634 0.89114 1.25280 0.96125 0.96865 0.98361 1.70058 1.11584 1.42607 1.25569 0.85656 0.79030 0.78371 0.80400 1.19158 1.20217 1.20219 1.20960 0.94336 1.10431 0.98006 1.20445 0.98195 1.02086 0.90768 0.89520 0.94225 0.93933 0.91910 0.92327 0.92367 0.91740 0.91619 0.92569 0.91965 0.92061 0.91500 0.76886 0.76921 0.85717 0.86184 0.92146 0.85164 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.21 10.67 -40.08 -0.43 -3.64 16 3 C 0.06 0.36 6.32 37.16 0.23 0.60 16 4 C 0.06 0.37 6.32 37.16 0.23 0.60 16 5 O -0.38 -3.02 9.16 -40.08 -0.37 -3.39 16 6 C 0.05 0.38 5.68 37.16 0.21 0.59 16 7 C 0.17 1.65 2.98 -67.92 -0.20 1.45 16 8 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 9 C -0.16 -1.68 9.29 37.16 0.35 -1.34 16 10 N -0.74 -7.99 5.07 -58.67 -0.30 -8.29 16 11 C 0.70 10.52 8.26 -86.92 -0.72 9.80 16 12 O -0.58 -11.07 13.72 5.28 0.07 -11.00 16 13 N -0.68 -9.74 5.35 -14.18 -0.08 -9.82 16 14 C 0.06 1.10 6.27 -83.62 -0.52 0.57 16 15 C -0.07 -1.39 8.65 -39.42 -0.34 -1.73 16 16 C -0.18 -3.99 9.98 -39.42 -0.39 -4.38 16 17 C 0.14 3.59 6.65 -39.09 -0.26 3.33 16 18 O -0.18 -5.21 9.76 0.00 0.00 -5.21 16 19 C -0.39 -11.01 9.44 30.88 0.29 -10.72 16 20 H 0.09 2.36 5.29 -52.49 -0.28 2.08 16 21 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 22 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 23 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 C -0.22 -4.79 9.13 -39.42 -0.36 -5.15 16 28 C -0.09 -1.75 9.96 -39.41 -0.39 -2.15 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.73 7.56 -51.93 -0.39 0.34 16 41 H 0.40 3.39 8.40 -40.82 -0.34 3.04 16 42 H 0.40 4.23 8.84 -40.82 -0.36 3.87 16 43 H 0.13 2.49 6.45 -52.49 -0.34 2.15 16 44 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.13 2.84 5.71 -52.49 -0.30 2.54 16 47 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -35.47 397.49 -7.26 -42.73 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.04 Total: 8.13 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.86 Total: -6.29 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.39 Total: -43.03 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.72 Total: -23.24 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.47 -7.26 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116148478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.622 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds