Wall clock time and date at job start Tue Mar 31 2020 21:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99748 * 2 1 4 4 C 1.53006 * 109.46782 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47115 * 64.99893 * 4 3 2 6 6 C 1.42900 * 113.99768 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46841 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46987 * 185.00174 * 7 6 5 9 9 C 1.53004 * 109.47020 * 304.99913 * 7 6 5 10 10 N 1.46503 * 109.47277 * 64.99930 * 7 6 5 11 11 C 1.34769 * 119.99972 * 155.00006 * 10 7 6 12 12 O 1.21596 * 120.00054 * 359.97438 * 11 10 7 13 13 N 1.34778 * 120.00159 * 179.97438 * 11 10 7 14 14 C 1.40026 * 120.00015 * 174.74305 * 13 11 10 15 15 C 1.38904 * 120.00288 * 326.14909 * 14 13 11 16 16 C 1.38015 * 119.99761 * 179.79049 * 15 14 13 17 17 C 1.38899 * 120.00068 * 0.46148 * 16 15 14 18 18 O 1.35779 * 119.99760 * 179.76807 * 17 16 15 19 19 C 1.34816 * 116.99769 * 185.94165 * 18 17 16 20 20 H 1.08000 * 120.00555 * 5.41563 * 19 18 17 21 21 C 1.38636 * 120.00116 * 185.41154 * 19 18 17 22 22 N 1.31573 * 119.99729 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00053 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47154 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47216 * 120.00592 * 23 21 19 26 26 H 1.48504 * 109.46920 * 240.00062 * 23 21 19 27 27 C 1.38904 * 120.00387 * 359.79364 * 17 16 15 28 28 C 1.38012 * 120.00036 * 359.97174 * 27 17 16 29 29 H 1.09005 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47845 * 300.00393 * 1 2 3 31 31 H 1.09002 * 109.47245 * 60.00383 * 1 2 3 32 32 H 1.08999 * 109.46970 * 59.99750 * 3 2 1 33 33 H 1.08993 * 109.46790 * 299.99463 * 3 2 1 34 34 H 1.09000 * 109.47221 * 304.99784 * 4 3 2 35 35 H 1.09002 * 109.46806 * 184.99664 * 4 3 2 36 36 H 1.08997 * 109.47190 * 60.00393 * 6 5 4 37 37 H 1.08997 * 109.46987 * 299.99439 * 6 5 4 38 38 H 1.08995 * 109.46873 * 180.02562 * 9 7 6 39 39 H 1.08997 * 109.47172 * 300.00267 * 9 7 6 40 40 H 1.08999 * 109.47027 * 60.00286 * 9 7 6 41 41 H 0.96999 * 119.99432 * 335.27411 * 10 7 6 42 42 H 0.96997 * 119.99676 * 354.74829 * 13 11 10 43 43 H 1.08001 * 120.00573 * 0.02562 * 15 14 13 44 44 H 1.08003 * 119.99782 * 180.23148 * 16 15 14 45 45 H 0.97000 * 120.00353 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.00148 * 179.97438 * 27 17 16 47 47 H 1.07993 * 120.00292 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4197 -1.3220 7 6 5.7267 -0.2340 -2.6617 8 1 6.7969 -0.4368 -2.7025 9 6 4.9533 -1.5466 -2.8026 10 7 5.3588 0.6694 -3.7548 11 6 5.9854 0.5778 -4.9445 12 8 6.8565 -0.2542 -5.1105 13 7 5.6466 1.4086 -5.9503 14 6 6.3705 1.3886 -7.1488 15 6 7.7341 1.1245 -7.1323 16 6 8.4467 1.1006 -8.3140 17 6 7.8021 1.3502 -9.5188 18 8 8.5041 1.3313 -10.6809 19 6 7.8475 1.7016 -11.7986 20 1 6.8377 2.0786 -11.7319 21 6 8.4687 1.5987 -13.0338 22 7 9.6989 1.1391 -13.1151 23 14 7.5592 2.1125 -14.5824 24 1 6.2000 2.5904 -14.2226 25 1 8.3065 3.2047 -15.2559 26 1 7.4479 0.9500 -15.4997 27 6 6.4395 1.6195 -9.5349 28 6 5.7260 1.6386 -8.3537 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6884 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1766 0.0902 36 1 5.7362 -0.2121 -0.5074 37 1 5.8631 1.3959 -1.2602 38 1 5.1990 -2.0125 -3.7568 39 1 5.2270 -2.2187 -1.9893 40 1 3.8831 -1.3438 -2.7618 41 1 4.6670 1.3360 -3.6210 42 1 4.9014 2.0202 -5.8439 43 1 8.2361 0.9341 -6.1952 44 1 9.5062 0.8916 -8.3016 45 1 10.1337 1.0674 -13.9792 46 1 5.9385 1.8139 -10.4716 47 1 4.6667 1.8485 -8.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116148478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:53 Heat of formation + Delta-G solvation = -141.900164 kcal Electronic energy + Delta-G solvation = -28222.365595 eV Core-core repulsion = 23984.728467 eV Total energy + Delta-G solvation = -4237.637128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64042 -40.51687 -39.52025 -38.58517 -38.05674 -36.15283 -35.38501 -34.14558 -32.22443 -31.84392 -30.81976 -29.14915 -27.47494 -27.25933 -26.95161 -24.05064 -23.54646 -23.45506 -22.15785 -21.60055 -20.06030 -19.37707 -18.95803 -18.20929 -17.84811 -17.65214 -16.85630 -16.53007 -16.39362 -16.32433 -16.17859 -15.95427 -15.72494 -15.46493 -15.38929 -15.00103 -14.62376 -14.51781 -14.36173 -14.10452 -13.59257 -13.45587 -13.27084 -13.22476 -13.11880 -12.95365 -12.73474 -12.66934 -12.36929 -12.24788 -12.06654 -11.94309 -11.86437 -11.37363 -11.31724 -10.95349 -10.61444 -10.55308 -10.52665 -10.09341 -9.81657 -8.53637 -8.43295 -6.10260 0.55064 0.61188 1.38036 1.46023 1.56750 1.64546 2.13118 2.20771 2.67468 2.87015 2.91349 3.19906 3.26452 3.54348 3.81174 4.07824 4.08886 4.16215 4.18291 4.26907 4.38046 4.47939 4.51731 4.52649 4.55390 4.60052 4.62757 4.63334 4.68530 4.77937 4.83467 4.85339 4.89432 4.99707 5.09334 5.21219 5.33395 5.36163 5.45877 5.54118 5.62101 5.72030 6.03474 6.06667 6.18921 6.22293 6.32488 7.01138 7.08237 7.57800 7.82915 8.80483 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.001715 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.586585 B =16319.043424 C =16992.533795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.057 3.943 4 C 0.059 3.941 5 O -0.394 6.394 6 C 0.062 3.938 7 C 0.163 3.837 8 H 0.089 0.911 9 C -0.152 4.152 10 N -0.718 5.718 11 C 0.698 3.302 12 O -0.619 6.619 13 N -0.664 5.664 14 C 0.086 3.914 15 C -0.073 4.073 16 C -0.187 4.187 17 C 0.105 3.895 18 O -0.233 6.233 19 C -0.410 4.410 20 H 0.106 0.894 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 1.021 2.979 24 H -0.247 1.247 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.217 4.217 28 C -0.084 4.084 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.421 0.579 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.132 0.868 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.521 3.890 29.690 35.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.019 4.019 4 C -0.017 4.017 5 O -0.314 6.314 6 C -0.015 4.015 7 C 0.058 3.942 8 H 0.107 0.893 9 C -0.211 4.211 10 N -0.375 5.375 11 C 0.398 3.602 12 O -0.499 6.499 13 N -0.314 5.314 14 C -0.008 4.008 15 C -0.094 4.094 16 C -0.207 4.207 17 C 0.054 3.946 18 O -0.140 6.140 19 C -0.486 4.486 20 H 0.123 0.877 21 C -0.223 4.223 22 N -0.562 5.562 23 Si 0.840 3.160 24 H -0.171 1.171 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.237 4.237 28 C -0.104 4.104 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.249 0.751 42 H 0.259 0.741 43 H 0.147 0.853 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.149 0.851 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.402 2.822 29.305 34.719 hybrid contribution -0.490 0.697 -0.675 1.087 sum -18.892 3.519 28.630 34.481 Atomic orbital electron populations 1.22868 0.79918 1.03441 1.00741 1.87919 1.21037 1.28836 1.95588 1.22739 0.92393 0.84893 1.01895 1.22698 0.93429 0.98605 0.86967 1.87928 1.21854 1.82545 1.39068 1.22769 0.82101 1.00928 0.95721 1.20957 0.99759 0.89294 0.84169 0.89298 1.22006 1.01092 0.96683 1.01299 1.44976 1.42491 1.39971 1.10049 1.16138 0.81867 0.80967 0.81216 1.90934 1.36452 1.40048 1.82511 1.42146 1.35940 1.41232 1.12049 1.17123 0.90281 1.08118 0.85290 1.20719 0.93000 0.98789 0.96845 1.20238 1.00136 1.10070 0.90217 1.19851 0.91998 0.95437 0.87317 1.83968 1.39094 1.77291 1.13623 1.21897 1.00555 1.43158 0.83039 0.87677 1.26630 0.97028 0.96685 1.01999 1.70215 1.13902 1.45402 1.26633 0.84495 0.78311 0.78088 0.75084 1.17058 1.19471 1.19661 1.21108 0.93248 1.09806 0.99548 1.20787 1.00143 1.00325 0.89163 0.89360 0.92758 0.93641 0.89828 0.92347 0.92250 0.89469 0.90113 0.91018 0.94839 0.90574 0.91807 0.75071 0.74130 0.85272 0.86982 0.91963 0.85067 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.22 10.67 -144.34 -1.54 -7.76 16 3 C 0.06 0.52 6.32 71.98 0.45 0.98 16 4 C 0.06 0.51 6.32 71.98 0.45 0.96 16 5 O -0.39 -5.19 9.16 -144.34 -1.32 -6.51 16 6 C 0.06 0.69 5.68 71.98 0.41 1.10 16 7 C 0.16 2.88 2.98 44.99 0.13 3.02 16 8 H 0.09 1.84 7.58 -2.39 -0.02 1.82 16 9 C -0.15 -3.01 9.29 71.98 0.67 -2.34 16 10 N -0.72 -13.57 5.07 -457.79 -2.32 -15.89 16 11 C 0.70 19.39 8.26 179.06 1.48 20.87 16 12 O -0.62 -23.22 13.72 -4.02 -0.06 -23.28 16 13 N -0.66 -16.91 5.35 -317.04 -1.70 -18.61 16 14 C 0.09 2.98 6.27 38.15 0.24 3.22 16 15 C -0.07 -2.96 8.65 22.38 0.19 -2.76 16 16 C -0.19 -8.76 9.98 22.38 0.22 -8.54 16 17 C 0.10 5.39 6.65 22.59 0.15 5.54 16 18 O -0.23 -14.35 9.76 -22.92 -0.22 -14.58 16 19 C -0.41 -24.04 9.44 67.92 0.64 -23.40 16 20 H 0.11 5.55 5.29 -2.91 -0.02 5.54 16 21 C -0.03 -1.52 5.49 84.83 0.47 -1.05 16 22 N -0.92 -57.65 13.67 21.61 0.30 -57.35 16 23 Si 1.02 43.08 29.55 68.60 2.03 45.11 16 24 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 C -0.22 -9.44 9.13 22.38 0.20 -9.24 16 28 C -0.08 -2.87 9.96 22.38 0.22 -2.65 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.30 7.56 -2.39 -0.02 1.28 16 41 H 0.41 5.51 8.40 -92.71 -0.78 4.73 16 42 H 0.42 7.00 8.84 -92.71 -0.82 6.19 16 43 H 0.13 5.13 6.45 -2.91 -0.02 5.11 16 44 H 0.11 5.26 8.06 -2.91 -0.02 5.24 16 45 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.13 5.62 5.71 -2.91 -0.02 5.61 16 47 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -82.31 397.49 1.76 -80.55 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.60 Total: 31.11 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 7.19 Total: -12.79 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -3.72 Total: -91.85 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -3.14 Total: -52.13 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -82.31 1.76 -80.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116148478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.350 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds