Wall clock time and date at job start Tue Mar 31 2020 21:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00223 * 2 1 4 4 C 1.52997 * 109.46814 * 180.02562 * 3 2 1 5 5 O 1.42892 * 109.47516 * 64.99989 * 4 3 2 6 6 C 1.42900 * 114.00212 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47410 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47451 * 174.99887 * 7 6 5 9 9 C 1.53002 * 109.47316 * 54.99233 * 7 6 5 10 10 N 1.46505 * 109.46832 * 294.99761 * 7 6 5 11 11 C 1.34777 * 119.99843 * 205.00468 * 10 7 6 12 12 O 1.21589 * 120.00360 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99759 * 180.02562 * 11 10 7 14 14 C 1.40034 * 119.99568 * 175.48731 * 13 11 10 15 15 C 1.38914 * 119.99884 * 214.84398 * 14 13 11 16 16 C 1.38003 * 119.99881 * 179.79386 * 15 14 13 17 17 C 1.38908 * 119.99986 * 0.46603 * 16 15 14 18 18 O 1.35780 * 120.00074 * 179.76878 * 17 16 15 19 19 C 1.34814 * 117.00046 * 185.36745 * 18 17 16 20 20 H 1.07995 * 120.00207 * 354.95561 * 19 18 17 21 21 C 1.38635 * 119.99866 * 174.96344 * 19 18 17 22 22 N 1.31573 * 119.99657 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00075 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46875 * 90.00275 * 23 21 19 25 25 H 1.48496 * 109.47205 * 209.99998 * 23 21 19 26 26 H 1.48502 * 109.47099 * 330.00198 * 23 21 19 27 27 C 1.38910 * 120.00112 * 359.79123 * 17 16 15 28 28 C 1.38006 * 119.99852 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.46880 * 60.00051 * 1 2 3 30 30 H 1.09002 * 109.47574 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46997 * 300.00602 * 1 2 3 32 32 H 1.08997 * 109.47216 * 59.99611 * 3 2 1 33 33 H 1.09001 * 109.46559 * 299.99493 * 3 2 1 34 34 H 1.09002 * 109.47083 * 304.99085 * 4 3 2 35 35 H 1.09002 * 109.46938 * 185.00162 * 4 3 2 36 36 H 1.09000 * 109.47624 * 59.99460 * 6 5 4 37 37 H 1.08998 * 109.46730 * 299.99323 * 6 5 4 38 38 H 1.09000 * 109.46961 * 180.02562 * 9 7 6 39 39 H 1.08999 * 109.46334 * 60.00346 * 9 7 6 40 40 H 1.08994 * 109.47080 * 300.00689 * 9 7 6 41 41 H 0.96996 * 120.00146 * 24.99368 * 10 7 6 42 42 H 0.96997 * 120.00448 * 355.48479 * 13 11 10 43 43 H 1.08001 * 119.99813 * 0.03485 * 15 14 13 44 44 H 1.07997 * 120.00415 * 180.23399 * 16 15 14 45 45 H 0.96998 * 119.99755 * 179.97438 * 22 21 19 46 46 H 1.07996 * 119.99733 * 179.97438 * 27 17 16 47 47 H 1.07999 * 119.99398 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3811 0.4189 -1.3245 7 6 5.7245 -0.2354 -2.6642 8 1 6.8074 -0.2771 -2.7812 9 6 5.1197 0.5874 -3.8035 10 7 5.1769 -1.5938 -2.6988 11 6 5.7362 -2.5257 -3.4958 12 8 6.6950 -2.2390 -4.1864 13 7 5.2321 -3.7752 -3.5280 14 6 5.7521 -4.7170 -4.4245 15 6 4.9137 -5.6607 -5.0043 16 6 5.4253 -6.5861 -5.8910 17 6 6.7804 -6.5801 -6.1963 18 8 7.2847 -7.4936 -7.0651 19 6 8.6223 -7.5053 -7.2331 20 1 9.2335 -6.7563 -6.7517 21 6 9.2131 -8.4787 -8.0238 22 7 10.5185 -8.4898 -8.1881 23 14 8.1559 -9.7746 -8.8560 24 1 7.7419 -9.2891 -10.1970 25 1 8.9356 -11.0298 -9.0031 26 1 6.9499 -10.0349 -8.0297 27 6 7.6198 -5.6399 -5.6124 28 6 7.1073 -4.7114 -4.7293 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8514 0.5681 0.8410 35 1 3.9786 2.1763 0.0890 36 1 5.7350 -0.2136 -0.5103 37 1 5.8628 1.3946 -1.2623 38 1 5.3640 0.1210 -4.7579 39 1 5.5271 1.5980 -3.7777 40 1 4.0369 0.6291 -3.6865 41 1 4.4120 -1.8225 -2.1480 42 1 4.5092 -4.0222 -2.9303 43 1 3.8607 -5.6676 -4.7642 44 1 4.7729 -7.3174 -6.3448 45 1 10.9320 -9.1711 -8.7410 46 1 8.6734 -5.6356 -5.8494 47 1 7.7600 -3.9807 -4.2751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116148479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:57 Heat of formation + Delta-G solvation = -112.272481 kcal Electronic energy + Delta-G solvation = -28404.934695 eV Core-core repulsion = 24168.582320 eV Total energy + Delta-G solvation = -4236.352375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.37270 -39.14304 -38.74856 -37.84237 -36.74899 -35.18090 -33.93051 -32.27241 -31.38773 -30.24364 -30.16404 -27.80431 -26.91521 -26.44218 -25.05803 -23.04851 -22.74038 -21.95675 -20.85431 -20.39789 -18.57915 -17.71933 -17.52546 -17.36580 -17.24061 -16.64972 -15.97650 -15.83419 -15.77351 -15.20849 -14.94549 -14.72654 -14.33853 -13.89834 -13.78567 -13.72755 -13.68455 -13.36763 -13.08939 -12.70231 -12.65414 -12.39234 -12.31944 -12.20566 -12.07191 -11.71342 -11.60928 -11.54078 -11.43999 -11.15277 -10.89671 -10.66613 -10.21877 -10.17566 -10.06485 -9.85241 -9.60655 -9.17259 -9.09066 -8.68468 -8.18855 -6.95021 -6.33960 -3.99504 2.14646 2.24159 2.75727 3.15731 3.27193 3.29119 3.30334 3.41207 3.45278 4.29119 4.30142 4.43034 4.57914 4.59001 4.65744 4.77340 4.81976 4.87419 4.93486 4.94002 4.98598 5.00867 5.17891 5.18137 5.25497 5.26660 5.37484 5.59364 5.64825 5.74003 5.85270 6.16786 6.17471 6.22758 6.31014 6.49223 6.62630 6.68577 6.74399 6.77449 6.94167 7.21310 7.27409 7.40395 7.68691 7.88312 8.11082 8.13851 8.75995 9.01368 9.64260 10.73858 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.001854 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.223982 B =15100.503831 C =15964.779340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.375 6.375 6 C 0.053 3.947 7 C 0.167 3.833 8 H 0.101 0.899 9 C -0.160 4.160 10 N -0.740 5.740 11 C 0.700 3.300 12 O -0.576 6.576 13 N -0.677 5.677 14 C 0.066 3.934 15 C -0.099 4.099 16 C -0.177 4.177 17 C 0.149 3.851 18 O -0.219 6.219 19 C -0.387 4.387 20 H 0.107 0.893 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.206 4.206 28 C -0.067 4.067 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.398 0.602 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.278 0.722 46 H 0.136 0.864 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.179 20.607 19.164 33.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.294 6.294 6 C -0.024 4.024 7 C 0.062 3.938 8 H 0.119 0.881 9 C -0.219 4.219 10 N -0.396 5.396 11 C 0.401 3.599 12 O -0.453 6.453 13 N -0.324 5.324 14 C -0.027 4.027 15 C -0.120 4.120 16 C -0.197 4.197 17 C 0.097 3.903 18 O -0.124 6.124 19 C -0.462 4.462 20 H 0.124 0.876 21 C -0.141 4.141 22 N -0.519 5.519 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.184 1.184 27 C -0.225 4.225 28 C -0.087 4.087 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.234 0.766 42 H 0.232 0.768 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.088 0.912 46 H 0.153 0.847 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.221 20.407 18.142 32.283 hybrid contribution -1.003 -0.311 0.420 1.131 sum -18.224 20.096 18.563 32.871 Atomic orbital electron populations 1.22757 0.80926 1.03021 0.99858 1.87956 1.19689 1.27189 1.95374 1.22557 0.92367 0.85633 1.00871 1.22510 0.93371 0.97614 0.87844 1.87960 1.21694 1.82087 1.37698 1.22869 0.82112 0.99945 0.97514 1.20827 0.99298 0.80390 0.93287 0.88133 1.22099 1.01827 0.99222 0.98723 1.45119 1.36359 1.10177 1.47959 1.15970 0.82928 0.80331 0.80706 1.90932 1.28451 1.80203 1.45747 1.42319 1.40053 1.09364 1.40678 1.17106 0.92526 0.94233 0.98868 1.20326 0.97785 0.96388 0.97477 1.19955 0.93180 1.02999 1.03550 1.19143 0.92393 0.89451 0.89328 1.83561 1.25155 1.50173 1.53540 1.20775 0.78182 1.15599 1.31684 0.87609 1.24464 0.95467 0.97545 0.96643 1.69661 1.08625 1.35258 1.38404 0.86172 0.80555 0.80011 0.80092 1.19963 1.20924 1.18367 1.21231 1.01320 0.97837 1.02157 1.20945 0.93222 0.97199 0.97364 0.93963 0.89445 0.94225 0.91911 0.92359 0.92375 0.91739 0.92453 0.91719 0.91843 0.92090 0.91692 0.76586 0.76766 0.86653 0.86150 0.91157 0.84656 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.11 10.67 -40.09 -0.43 -3.54 16 3 C 0.06 0.36 6.32 37.16 0.23 0.59 16 4 C 0.06 0.36 6.32 37.16 0.23 0.59 16 5 O -0.38 -2.98 9.16 -40.09 -0.37 -3.35 16 6 C 0.05 0.37 5.68 37.16 0.21 0.58 16 7 C 0.17 1.64 2.98 -67.93 -0.20 1.44 16 8 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 9 C -0.16 -1.61 9.29 37.16 0.35 -1.27 16 10 N -0.74 -8.14 5.06 -58.67 -0.30 -8.44 16 11 C 0.70 10.56 8.37 -86.92 -0.73 9.83 16 12 O -0.58 -11.08 13.44 5.29 0.07 -11.01 16 13 N -0.68 -9.64 5.35 -14.18 -0.08 -9.72 16 14 C 0.07 1.19 6.30 -83.61 -0.53 0.66 16 15 C -0.10 -1.71 9.96 -39.42 -0.39 -2.10 16 16 C -0.18 -3.56 9.99 -39.42 -0.39 -3.95 16 17 C 0.15 3.56 6.65 -39.08 -0.26 3.30 16 18 O -0.22 -5.92 8.58 0.00 0.00 -5.92 16 19 C -0.39 -11.19 9.94 30.88 0.31 -10.88 16 20 H 0.11 3.15 5.43 -52.49 -0.28 2.86 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 22 N -0.88 -26.01 13.96 55.48 0.77 -25.24 16 23 Si 0.91 22.09 28.62 -169.99 -4.86 17.23 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.21 -4.76 9.16 -39.42 -0.36 -5.12 16 28 C -0.07 -1.39 8.69 -39.42 -0.34 -1.74 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.15 8.14 -51.92 -0.42 -0.27 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 41 H 0.40 3.67 8.40 -40.82 -0.34 3.33 16 42 H 0.40 4.20 8.84 -40.82 -0.36 3.84 16 43 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 45 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.14 3.29 5.63 -52.49 -0.30 3.00 16 47 H 0.13 2.70 6.22 -52.49 -0.33 2.38 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -34.56 395.95 -7.10 -41.66 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.03 Total: 7.47 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.86 Total: -5.12 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.40 Total: -43.39 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.72 Total: -23.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.56 -7.10 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116148479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.611 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds