Wall clock time and date at job start Tue Mar 31 2020 21:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00223 * 2 1 4 4 C 1.52997 * 109.46814 * 180.02562 * 3 2 1 5 5 O 1.42892 * 109.47516 * 64.99989 * 4 3 2 6 6 C 1.42900 * 114.00212 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47410 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47451 * 174.99887 * 7 6 5 9 9 C 1.53002 * 109.47316 * 54.99233 * 7 6 5 10 10 N 1.46505 * 109.46832 * 294.99761 * 7 6 5 11 11 C 1.34777 * 119.99843 * 205.00468 * 10 7 6 12 12 O 1.21589 * 120.00360 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99759 * 180.02562 * 11 10 7 14 14 C 1.40034 * 119.99568 * 175.48731 * 13 11 10 15 15 C 1.38914 * 119.99884 * 214.84398 * 14 13 11 16 16 C 1.38003 * 119.99881 * 179.79386 * 15 14 13 17 17 C 1.38908 * 119.99986 * 0.46603 * 16 15 14 18 18 O 1.35780 * 120.00074 * 179.76878 * 17 16 15 19 19 C 1.34814 * 117.00046 * 185.36745 * 18 17 16 20 20 H 1.07995 * 120.00207 * 354.95561 * 19 18 17 21 21 C 1.38635 * 119.99866 * 174.96344 * 19 18 17 22 22 N 1.31573 * 119.99657 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00075 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46875 * 90.00275 * 23 21 19 25 25 H 1.48496 * 109.47205 * 209.99998 * 23 21 19 26 26 H 1.48502 * 109.47099 * 330.00198 * 23 21 19 27 27 C 1.38910 * 120.00112 * 359.79123 * 17 16 15 28 28 C 1.38006 * 119.99852 * 359.97438 * 27 17 16 29 29 H 1.08998 * 109.46880 * 60.00051 * 1 2 3 30 30 H 1.09002 * 109.47574 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46997 * 300.00602 * 1 2 3 32 32 H 1.08997 * 109.47216 * 59.99611 * 3 2 1 33 33 H 1.09001 * 109.46559 * 299.99493 * 3 2 1 34 34 H 1.09002 * 109.47083 * 304.99085 * 4 3 2 35 35 H 1.09002 * 109.46938 * 185.00162 * 4 3 2 36 36 H 1.09000 * 109.47624 * 59.99460 * 6 5 4 37 37 H 1.08998 * 109.46730 * 299.99323 * 6 5 4 38 38 H 1.09000 * 109.46961 * 180.02562 * 9 7 6 39 39 H 1.08999 * 109.46334 * 60.00346 * 9 7 6 40 40 H 1.08994 * 109.47080 * 300.00689 * 9 7 6 41 41 H 0.96996 * 120.00146 * 24.99368 * 10 7 6 42 42 H 0.96997 * 120.00448 * 355.48479 * 13 11 10 43 43 H 1.08001 * 119.99813 * 0.03485 * 15 14 13 44 44 H 1.07997 * 120.00415 * 180.23399 * 16 15 14 45 45 H 0.96998 * 119.99755 * 179.97438 * 22 21 19 46 46 H 1.07996 * 119.99733 * 179.97438 * 27 17 16 47 47 H 1.07999 * 119.99398 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3811 0.4189 -1.3245 7 6 5.7245 -0.2354 -2.6642 8 1 6.8074 -0.2771 -2.7812 9 6 5.1197 0.5874 -3.8035 10 7 5.1769 -1.5938 -2.6988 11 6 5.7362 -2.5257 -3.4958 12 8 6.6950 -2.2390 -4.1864 13 7 5.2321 -3.7752 -3.5280 14 6 5.7521 -4.7170 -4.4245 15 6 4.9137 -5.6607 -5.0043 16 6 5.4253 -6.5861 -5.8910 17 6 6.7804 -6.5801 -6.1963 18 8 7.2847 -7.4936 -7.0651 19 6 8.6223 -7.5053 -7.2331 20 1 9.2335 -6.7563 -6.7517 21 6 9.2131 -8.4787 -8.0238 22 7 10.5185 -8.4898 -8.1881 23 14 8.1559 -9.7746 -8.8560 24 1 7.7419 -9.2891 -10.1970 25 1 8.9356 -11.0298 -9.0031 26 1 6.9499 -10.0349 -8.0297 27 6 7.6198 -5.6399 -5.6124 28 6 7.1073 -4.7114 -4.7293 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8514 0.5681 0.8410 35 1 3.9786 2.1763 0.0890 36 1 5.7350 -0.2136 -0.5103 37 1 5.8628 1.3946 -1.2623 38 1 5.3640 0.1210 -4.7579 39 1 5.5271 1.5980 -3.7777 40 1 4.0369 0.6291 -3.6865 41 1 4.4120 -1.8225 -2.1480 42 1 4.5092 -4.0222 -2.9303 43 1 3.8607 -5.6676 -4.7642 44 1 4.7729 -7.3174 -6.3448 45 1 10.9320 -9.1711 -8.7410 46 1 8.6734 -5.6356 -5.8494 47 1 7.7600 -3.9807 -4.2751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116148479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:56 Heat of formation + Delta-G solvation = -138.017517 kcal Electronic energy + Delta-G solvation = -28406.051083 eV Core-core repulsion = 24168.582320 eV Total energy + Delta-G solvation = -4237.468763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67485 -40.61858 -39.53609 -38.62768 -38.10379 -36.17187 -35.39913 -34.35750 -32.27276 -31.84251 -30.83938 -29.37981 -27.48227 -27.09238 -26.91826 -24.21287 -23.45761 -23.43456 -22.09346 -21.59055 -20.12405 -19.39813 -19.06674 -18.35904 -17.86480 -17.64679 -16.75546 -16.68336 -16.41640 -16.37980 -16.08509 -15.81681 -15.72385 -15.60655 -15.44095 -15.25908 -14.61402 -14.42498 -14.19786 -14.18658 -14.01047 -13.51743 -13.46874 -13.30018 -13.17288 -12.89225 -12.72395 -12.62720 -12.45022 -12.19530 -12.03066 -11.98077 -11.86442 -11.49153 -11.30448 -10.98127 -10.62695 -10.60966 -10.52976 -10.10991 -9.83437 -8.61492 -8.47272 -6.19376 0.51944 0.57252 1.33735 1.38918 1.54793 1.63088 2.11559 2.30903 2.66614 2.79821 2.91472 3.05571 3.19158 3.26676 3.80247 4.09259 4.10378 4.13165 4.16992 4.27542 4.35822 4.48129 4.49268 4.53118 4.55038 4.61144 4.62979 4.64626 4.66314 4.71403 4.81129 4.86954 4.91038 4.99790 5.07729 5.21429 5.34809 5.39059 5.52233 5.54266 5.65413 5.77254 5.94096 6.03567 6.18679 6.24396 6.32129 6.86400 7.06716 7.56262 7.60047 8.64619 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.001854 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.223982 B =15100.503831 C =15964.779340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.058 3.942 4 C 0.059 3.941 5 O -0.394 6.394 6 C 0.062 3.938 7 C 0.161 3.839 8 H 0.087 0.913 9 C -0.152 4.152 10 N -0.719 5.719 11 C 0.697 3.303 12 O -0.621 6.621 13 N -0.664 5.664 14 C 0.091 3.909 15 C -0.082 4.082 16 C -0.165 4.165 17 C 0.110 3.890 18 O -0.241 6.241 19 C -0.399 4.399 20 H 0.075 0.925 21 C 0.006 3.994 22 N -0.926 5.926 23 Si 0.976 3.024 24 H -0.267 1.267 25 H -0.268 1.268 26 H -0.258 1.258 27 C -0.221 4.221 28 C -0.082 4.082 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.413 0.587 42 H 0.422 0.578 43 H 0.171 0.829 44 H 0.145 0.855 45 H 0.284 0.716 46 H 0.105 0.895 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.040 21.570 21.073 37.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.019 4.019 4 C -0.017 4.017 5 O -0.313 6.313 6 C -0.015 4.015 7 C 0.056 3.944 8 H 0.105 0.895 9 C -0.211 4.211 10 N -0.375 5.375 11 C 0.397 3.603 12 O -0.501 6.501 13 N -0.314 5.314 14 C -0.003 4.003 15 C -0.102 4.102 16 C -0.185 4.185 17 C 0.060 3.940 18 O -0.148 6.148 19 C -0.476 4.476 20 H 0.093 0.907 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.798 3.202 24 H -0.192 1.192 25 H -0.193 1.193 26 H -0.181 1.181 27 C -0.241 4.241 28 C -0.102 4.102 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.260 0.740 43 H 0.188 0.812 44 H 0.163 0.837 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.157 21.428 20.137 36.225 hybrid contribution 0.029 -0.288 0.086 0.302 sum -21.128 21.140 20.223 36.087 Atomic orbital electron populations 1.22871 0.79906 1.03531 1.00654 1.87905 1.21015 1.28675 1.95578 1.22720 0.92369 0.84992 1.01779 1.22693 0.93454 0.98672 0.86880 1.87924 1.21816 1.82621 1.38969 1.22767 0.82269 1.00918 0.95546 1.20981 0.98551 0.79688 0.95154 0.89509 1.22014 1.01908 1.00051 0.97086 1.45013 1.36065 1.09928 1.46531 1.16172 0.82490 0.80889 0.80746 1.90925 1.30526 1.80955 1.47657 1.42134 1.40349 1.08537 1.40366 1.17224 0.91414 0.94001 0.97695 1.20809 1.00072 0.94137 0.95162 1.20370 0.91446 1.03545 1.03123 1.19668 0.94206 0.89699 0.90398 1.83500 1.23517 1.51979 1.55852 1.20679 0.79334 1.15454 1.32098 0.90735 1.25353 0.96804 0.99720 0.97277 1.69755 1.10275 1.36706 1.39950 0.85138 0.78711 0.77451 0.78913 1.19152 1.19281 1.18150 1.21115 1.00200 0.99220 1.03604 1.20922 0.94951 0.96776 0.97557 0.93717 0.89177 0.92873 0.89834 0.92568 0.92265 0.89482 0.91755 0.89441 0.94989 0.90127 0.91596 0.75057 0.73952 0.81168 0.83746 0.90612 0.87716 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -5.84 10.67 -144.34 -1.54 -7.38 16 3 C 0.06 0.52 6.32 71.98 0.45 0.97 16 4 C 0.06 0.50 6.32 71.98 0.45 0.95 16 5 O -0.39 -5.14 9.16 -144.34 -1.32 -6.46 16 6 C 0.06 0.70 5.68 71.98 0.41 1.11 16 7 C 0.16 2.90 2.98 44.99 0.13 3.03 16 8 H 0.09 1.85 7.58 -2.39 -0.02 1.83 16 9 C -0.15 -2.86 9.29 71.98 0.67 -2.20 16 10 N -0.72 -14.36 5.06 -457.80 -2.32 -16.67 16 11 C 0.70 19.96 8.37 179.05 1.50 21.46 16 12 O -0.62 -23.97 13.44 -4.00 -0.05 -24.03 16 13 N -0.66 -16.98 5.35 -317.04 -1.69 -18.67 16 14 C 0.09 3.09 6.30 38.15 0.24 3.33 16 15 C -0.08 -2.49 9.96 22.38 0.22 -2.26 16 16 C -0.17 -6.27 9.99 22.37 0.22 -6.04 16 17 C 0.11 5.35 6.65 22.59 0.15 5.50 16 18 O -0.24 -13.46 8.58 -22.91 -0.20 -13.66 16 19 C -0.40 -24.51 9.94 67.91 0.68 -23.84 16 20 H 0.08 4.88 5.43 -2.91 -0.02 4.87 16 21 C 0.01 0.38 5.49 84.83 0.47 0.84 16 22 N -0.93 -57.14 13.96 21.61 0.30 -56.84 16 23 Si 0.98 46.39 28.62 68.60 1.96 48.35 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 C -0.22 -10.86 9.16 22.38 0.20 -10.66 16 28 C -0.08 -3.46 8.69 22.37 0.19 -3.26 16 29 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.23 7.56 -2.39 -0.02 1.21 16 41 H 0.41 6.33 8.40 -92.71 -0.78 5.55 16 42 H 0.42 7.01 8.84 -92.71 -0.82 6.19 16 43 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 44 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 45 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16 46 H 0.10 5.69 5.63 -2.91 -0.02 5.67 16 47 H 0.12 5.31 6.22 -2.91 -0.02 5.29 16 Total: -1.00 -80.55 395.95 1.79 -78.76 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.60 Total: 26.18 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 7.25 Total: -9.58 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -3.71 Total: -92.19 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -3.11 Total: -51.53 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.96 Total: 48.35 kcal Total: -80.55 1.79 -78.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116148479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.261 kcal (2) G-P(sol) polarization free energy of solvation -80.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds