Wall clock time and date at job start Tue Mar 31 2020 21:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81403 * 102.99861 * 2 1 4 4 C 1.52998 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46686 * 304.99945 * 4 3 2 6 6 C 1.52994 * 109.47284 * 64.99854 * 4 3 2 7 7 C 1.50699 * 109.47399 * 184.99851 * 4 3 2 8 8 O 1.21286 * 119.99820 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00475 * 179.97438 * 7 4 3 10 10 C 1.46495 * 120.00062 * 180.02562 * 9 7 4 11 11 C 1.50703 * 109.46737 * 179.97438 * 10 9 7 12 12 C 1.40068 * 126.12929 * 259.99749 * 11 10 9 13 13 N 1.31011 * 108.25759 * 180.02562 * 12 11 10 14 14 N 1.39748 * 108.17485 * 0.16456 * 13 12 11 15 15 C 1.34650 * 126.12034 * 80.00532 * 11 10 9 16 16 C 1.51036 * 127.90845 * 359.69763 * 15 11 10 17 17 N 1.47505 * 106.99288 * 169.43205 * 16 15 11 18 18 C 1.36937 * 121.01584 * 222.93954 * 17 16 15 19 19 H 1.07997 * 119.99940 * 333.05866 * 18 17 16 20 20 C 1.38805 * 119.99857 * 152.77611 * 18 17 16 21 21 N 1.31618 * 120.00311 * 341.13909 * 20 18 17 22 22 Si 1.86806 * 119.99761 * 161.13561 * 20 18 17 23 23 H 1.48504 * 109.46692 * 94.14801 * 22 20 18 24 24 H 1.48498 * 109.47130 * 214.14770 * 22 20 18 25 25 H 1.48498 * 109.47090 * 334.15049 * 22 20 18 26 26 C 1.47086 * 117.97007 * 43.21838 * 17 16 15 27 27 C 1.46555 * 127.31844 * 179.45356 * 14 13 12 28 28 H 1.08989 * 109.47451 * 300.00048 * 1 2 3 29 29 H 1.09003 * 109.47276 * 60.00422 * 1 2 3 30 30 H 1.09000 * 109.46714 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47367 * 59.99472 * 3 2 1 32 32 H 1.09004 * 109.46907 * 299.99798 * 3 2 1 33 33 H 1.09006 * 109.47184 * 300.00646 * 6 4 3 34 34 H 1.09004 * 109.47494 * 59.99978 * 6 4 3 35 35 H 1.08999 * 109.47797 * 180.02562 * 6 4 3 36 36 H 0.97004 * 119.99406 * 359.97438 * 9 7 4 37 37 H 1.09003 * 109.47249 * 60.00517 * 10 9 7 38 38 H 1.08997 * 109.47310 * 300.00178 * 10 9 7 39 39 H 1.08001 * 125.87268 * 0.07981 * 12 11 10 40 40 H 1.08994 * 109.94740 * 50.06560 * 16 15 11 41 41 H 1.09000 * 109.94975 * 288.80265 * 16 15 11 42 42 H 0.97002 * 120.00038 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.51960 * 56.06012 * 26 17 16 44 44 H 1.09007 * 109.51167 * 176.21192 * 26 17 16 45 45 H 1.08998 * 109.50613 * 281.49496 * 27 14 13 46 46 H 1.08996 * 109.51311 * 41.63119 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9401 0.0006 5 1 4.1693 1.3954 0.8427 6 6 4.3183 1.3917 -1.3063 7 6 4.0818 3.4031 0.1244 8 8 3.1951 4.2268 0.2038 9 7 5.3707 3.7963 0.1469 10 6 5.7007 5.2185 0.2679 11 6 7.1981 5.3882 0.2696 12 6 8.0063 5.5792 1.3976 13 7 9.2496 5.6854 0.9985 14 7 9.2718 5.5694 -0.3940 15 6 7.9987 5.3837 -0.8130 16 6 7.6025 5.2052 -2.2595 17 7 8.7876 5.5318 -3.0746 18 6 8.6760 6.2882 -4.2106 19 1 7.7494 6.2961 -4.7652 20 6 9.7520 7.0493 -4.6461 21 7 10.7266 7.3482 -3.8135 22 14 9.8169 7.6494 -6.4139 23 1 9.2484 9.0191 -6.4928 24 1 11.2274 7.6714 -6.8778 25 1 9.0264 6.7349 -7.2764 26 6 10.0921 5.0150 -2.6334 27 6 10.4428 5.6379 -1.2727 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8030 2.2372 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 4.0727 0.3335 -1.3959 34 1 3.8912 1.9363 -2.1485 35 1 5.4014 1.5142 -1.3058 36 1 6.0799 3.1374 0.0838 37 1 5.2901 5.6089 1.1991 38 1 5.2738 5.7634 -0.5741 39 1 7.6635 5.6293 2.4206 40 1 6.7835 5.8806 -2.5067 41 1 7.3014 4.1729 -2.4379 42 1 11.4783 7.8804 -4.1177 43 1 10.0401 3.9306 -2.5358 44 1 10.8550 5.2792 -3.3657 45 1 10.7322 6.6794 -1.4128 46 1 11.2686 5.0874 -0.8223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128279817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:18 Heat of formation + Delta-G solvation = 56.262088 kcal Electronic energy + Delta-G solvation = -27191.263018 eV Core-core repulsion = 23437.264473 eV Total energy + Delta-G solvation = -3753.998545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.99454 -39.77420 -36.32117 -35.00340 -34.66935 -32.54902 -31.85720 -29.94882 -29.38298 -28.91180 -27.34033 -26.18573 -25.15717 -23.50799 -22.93271 -21.77563 -20.26429 -19.87930 -18.35216 -17.47228 -16.88306 -16.39177 -15.87712 -15.66436 -15.58616 -15.23899 -14.70176 -14.54153 -14.20175 -13.96110 -13.81464 -13.77167 -13.53509 -13.50376 -13.23156 -13.05244 -12.64235 -12.51232 -12.37235 -12.30751 -11.72696 -11.61129 -11.55121 -11.41795 -11.39098 -11.04948 -10.91793 -10.51473 -10.28101 -10.23524 -10.18782 -10.08168 -9.78361 -8.94552 -8.81052 -8.59081 -7.96889 -7.94393 -7.05235 -6.09110 -3.53058 1.34737 2.28212 2.43144 2.65229 2.91054 3.12944 3.24593 3.32938 3.35088 3.64769 4.27937 4.36308 4.60864 4.74811 4.82545 4.83809 5.01397 5.09216 5.09549 5.13481 5.26603 5.30617 5.38394 5.42841 5.45846 5.61236 5.69466 5.75118 5.77079 5.96805 6.00954 6.02308 6.13398 6.19472 6.23889 6.46836 6.53760 6.59099 6.91789 7.01485 7.10006 7.55808 7.59120 7.64535 8.08489 8.24550 8.28572 8.86770 9.47912 10.02936 11.00315 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.002640 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.248812 B =10603.595868 C =11840.801143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.063 4.063 4 C -0.095 4.095 5 H 0.104 0.896 6 C -0.147 4.147 7 C 0.520 3.480 8 O -0.547 6.547 9 N -0.717 5.717 10 C 0.210 3.790 11 C -0.291 4.291 12 C 0.050 3.950 13 N -0.312 5.312 14 N -0.341 5.341 15 C 0.117 3.883 16 C 0.196 3.804 17 N -0.593 5.593 18 C -0.260 4.260 19 H 0.074 0.926 20 C 0.007 3.993 21 N -0.901 5.901 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.153 3.847 27 C 0.115 3.885 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.174 0.826 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.258 0.742 43 H 0.017 0.983 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.178 -12.691 7.653 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.038 6.038 3 C -0.212 4.212 4 C -0.117 4.117 5 H 0.122 0.878 6 C -0.205 4.205 7 C 0.304 3.696 8 O -0.425 6.425 9 N -0.368 5.368 10 C 0.087 3.913 11 C -0.304 4.304 12 C -0.137 4.137 13 N -0.133 5.133 14 N -0.121 5.121 15 C -0.017 4.017 16 C 0.069 3.931 17 N -0.316 5.316 18 C -0.388 4.388 19 H 0.091 0.909 20 C -0.192 4.192 21 N -0.545 5.545 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.202 1.202 26 C 0.026 3.974 27 C -0.007 4.007 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.191 0.809 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.035 0.965 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.603 -12.656 7.923 18.313 hybrid contribution -1.065 1.203 -0.871 1.828 sum -11.668 -11.452 7.052 17.805 Atomic orbital electron populations 1.23376 0.94164 1.06385 1.05086 1.86744 1.07460 1.11505 1.98091 1.23214 0.98031 0.93477 1.06459 1.21038 0.94721 0.94122 1.01851 0.87778 1.21860 1.01189 1.02290 0.95148 1.20378 0.82848 0.90252 0.76146 1.90697 1.47105 1.54595 1.50113 1.46274 1.07000 1.09671 1.73809 1.19315 0.89677 0.80459 1.01863 1.19398 0.95391 1.23379 0.92236 1.23628 0.90303 1.00724 0.99001 1.77221 1.20829 1.24939 0.90304 1.48815 1.06989 1.52335 1.03931 1.21912 0.85426 0.96417 0.97919 1.20130 0.92041 0.99062 0.81873 1.44272 1.01365 1.59472 1.26445 1.19180 1.00380 1.20519 0.98747 0.90871 1.25058 0.98571 0.96822 0.98781 1.69932 1.11745 1.39460 1.33332 0.86172 0.77165 0.78695 0.84096 1.21261 1.21352 1.20176 1.21271 0.90770 0.92616 0.92738 1.22789 0.83395 1.05189 0.89309 0.90476 0.90393 0.88138 0.89196 0.89265 0.90511 0.91646 0.91564 0.76460 0.91206 0.91149 0.80906 0.90049 0.93297 0.93159 0.96470 0.86747 0.87665 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.76 101.05 1.09 0.30 16 2 S -0.26 -2.37 21.19 -107.50 -2.28 -4.64 16 3 C -0.06 -0.61 4.73 37.16 0.18 -0.43 16 4 C -0.09 -0.91 2.72 -91.78 -0.25 -1.16 16 5 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.15 -1.31 8.92 37.15 0.33 -0.97 16 7 C 0.52 6.44 7.15 -10.99 -0.08 6.36 16 8 O -0.55 -8.68 15.92 5.55 0.09 -8.59 16 9 N -0.72 -8.56 5.44 -61.47 -0.33 -8.90 16 10 C 0.21 2.93 5.95 -5.19 -0.03 2.90 16 11 C -0.29 -4.71 5.46 -105.20 -0.57 -5.28 16 12 C 0.05 0.81 11.97 -17.22 -0.21 0.60 16 13 N -0.31 -6.05 12.61 30.70 0.39 -5.66 16 14 N -0.34 -6.92 4.03 -56.70 -0.23 -7.15 16 15 C 0.12 2.20 6.71 -82.17 -0.55 1.65 16 16 C 0.20 3.79 6.66 -4.48 -0.03 3.76 16 17 N -0.59 -13.52 2.99 -172.69 -0.52 -14.03 16 18 C -0.26 -6.50 9.66 -15.06 -0.15 -6.65 16 19 H 0.07 1.81 7.90 -52.49 -0.41 1.39 16 20 C 0.01 0.17 4.90 -17.43 -0.09 0.09 16 21 N -0.90 -23.42 10.26 55.49 0.57 -22.85 16 22 Si 0.91 20.17 29.60 -169.99 -5.03 15.14 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 26 C 0.15 3.27 5.58 -3.36 -0.02 3.25 16 27 C 0.12 2.37 7.36 -3.65 -0.03 2.34 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.09 0.91 7.96 -51.92 -0.41 0.50 16 32 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.08 0.65 7.13 -51.93 -0.37 0.28 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.55 7.57 -51.93 -0.39 0.16 16 36 H 0.40 4.28 7.88 -40.82 -0.32 3.96 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.08 1.58 8.01 -51.93 -0.42 1.17 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.11 2.66 5.93 -51.93 -0.31 2.35 16 45 H 0.11 2.47 7.21 -51.93 -0.37 2.09 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -29.12 387.41 -9.13 -38.25 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.22 Total: 5.83 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.40 Total: 6.76 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.12 Total: -58.59 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.28 Total: -4.64 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.12 -9.13 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128279817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.513 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds