Wall clock time and date at job start Tue Mar 31 2020 21:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81403 * 102.99861 * 2 1 4 4 C 1.52998 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46686 * 304.99945 * 4 3 2 6 6 C 1.52994 * 109.47284 * 64.99854 * 4 3 2 7 7 C 1.50699 * 109.47399 * 184.99851 * 4 3 2 8 8 O 1.21286 * 119.99820 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00475 * 179.97438 * 7 4 3 10 10 C 1.46495 * 120.00062 * 180.02562 * 9 7 4 11 11 C 1.50703 * 109.46737 * 179.97438 * 10 9 7 12 12 C 1.40068 * 126.12929 * 259.99749 * 11 10 9 13 13 N 1.31011 * 108.25759 * 180.02562 * 12 11 10 14 14 N 1.39748 * 108.17485 * 0.16456 * 13 12 11 15 15 C 1.34650 * 126.12034 * 80.00532 * 11 10 9 16 16 C 1.51036 * 127.90845 * 359.69763 * 15 11 10 17 17 N 1.47505 * 106.99288 * 169.43205 * 16 15 11 18 18 C 1.36937 * 121.01584 * 222.93954 * 17 16 15 19 19 H 1.07997 * 119.99940 * 333.05866 * 18 17 16 20 20 C 1.38805 * 119.99857 * 152.77611 * 18 17 16 21 21 N 1.31618 * 120.00311 * 341.13909 * 20 18 17 22 22 Si 1.86806 * 119.99761 * 161.13561 * 20 18 17 23 23 H 1.48504 * 109.46692 * 94.14801 * 22 20 18 24 24 H 1.48498 * 109.47130 * 214.14770 * 22 20 18 25 25 H 1.48498 * 109.47090 * 334.15049 * 22 20 18 26 26 C 1.47086 * 117.97007 * 43.21838 * 17 16 15 27 27 C 1.46555 * 127.31844 * 179.45356 * 14 13 12 28 28 H 1.08989 * 109.47451 * 300.00048 * 1 2 3 29 29 H 1.09003 * 109.47276 * 60.00422 * 1 2 3 30 30 H 1.09000 * 109.46714 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47367 * 59.99472 * 3 2 1 32 32 H 1.09004 * 109.46907 * 299.99798 * 3 2 1 33 33 H 1.09006 * 109.47184 * 300.00646 * 6 4 3 34 34 H 1.09004 * 109.47494 * 59.99978 * 6 4 3 35 35 H 1.08999 * 109.47797 * 180.02562 * 6 4 3 36 36 H 0.97004 * 119.99406 * 359.97438 * 9 7 4 37 37 H 1.09003 * 109.47249 * 60.00517 * 10 9 7 38 38 H 1.08997 * 109.47310 * 300.00178 * 10 9 7 39 39 H 1.08001 * 125.87268 * 0.07981 * 12 11 10 40 40 H 1.08994 * 109.94740 * 50.06560 * 16 15 11 41 41 H 1.09000 * 109.94975 * 288.80265 * 16 15 11 42 42 H 0.97002 * 120.00038 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.51960 * 56.06012 * 26 17 16 44 44 H 1.09007 * 109.51167 * 176.21192 * 26 17 16 45 45 H 1.08998 * 109.50613 * 281.49496 * 27 14 13 46 46 H 1.08996 * 109.51311 * 41.63119 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9401 0.0006 5 1 4.1693 1.3954 0.8427 6 6 4.3183 1.3917 -1.3063 7 6 4.0818 3.4031 0.1244 8 8 3.1951 4.2268 0.2038 9 7 5.3707 3.7963 0.1469 10 6 5.7007 5.2185 0.2679 11 6 7.1981 5.3882 0.2696 12 6 8.0063 5.5792 1.3976 13 7 9.2496 5.6854 0.9985 14 7 9.2718 5.5694 -0.3940 15 6 7.9987 5.3837 -0.8130 16 6 7.6025 5.2052 -2.2595 17 7 8.7876 5.5318 -3.0746 18 6 8.6760 6.2882 -4.2106 19 1 7.7494 6.2961 -4.7652 20 6 9.7520 7.0493 -4.6461 21 7 10.7266 7.3482 -3.8135 22 14 9.8169 7.6494 -6.4139 23 1 9.2484 9.0191 -6.4928 24 1 11.2274 7.6714 -6.8778 25 1 9.0264 6.7349 -7.2764 26 6 10.0921 5.0150 -2.6334 27 6 10.4428 5.6379 -1.2727 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8030 2.2372 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 4.0727 0.3335 -1.3959 34 1 3.8912 1.9363 -2.1485 35 1 5.4014 1.5142 -1.3058 36 1 6.0799 3.1374 0.0838 37 1 5.2901 5.6089 1.1991 38 1 5.2738 5.7634 -0.5741 39 1 7.6635 5.6293 2.4206 40 1 6.7835 5.8806 -2.5067 41 1 7.3014 4.1729 -2.4379 42 1 11.4783 7.8804 -4.1177 43 1 10.0401 3.9306 -2.5358 44 1 10.8550 5.2792 -3.3657 45 1 10.7322 6.6794 -1.4128 46 1 11.2686 5.0874 -0.8223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128279817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:17 Heat of formation + Delta-G solvation = 39.135952 kcal Electronic energy + Delta-G solvation = -27192.005663 eV Core-core repulsion = 23437.264473 eV Total energy + Delta-G solvation = -3754.741190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.40951 -40.80707 -37.98154 -36.13569 -35.55365 -34.23259 -33.39649 -31.52057 -30.37314 -29.86683 -28.14237 -27.73679 -26.50677 -25.05971 -24.04854 -23.30337 -21.61457 -20.93697 -19.83961 -18.71934 -18.33465 -17.45259 -17.03316 -16.95126 -16.73510 -16.51888 -16.23957 -15.60841 -15.45582 -15.32582 -14.99165 -14.95066 -14.66658 -14.54985 -14.29911 -14.04037 -13.88376 -13.75138 -13.39903 -13.22539 -13.04609 -12.99492 -12.95166 -12.73878 -12.64393 -12.31807 -12.23911 -12.17187 -12.00957 -11.86659 -11.57779 -11.00173 -10.79871 -10.67115 -10.10214 -10.01140 -9.37395 -8.85059 -8.63482 -7.98878 -5.44840 0.67331 0.99014 1.46936 1.50777 1.59096 1.62055 1.65409 1.67963 1.70354 2.46578 2.58308 3.19794 3.43709 3.58964 3.67725 3.79254 3.84185 3.89851 4.18239 4.28025 4.32965 4.35001 4.37667 4.38908 4.45111 4.53641 4.56064 4.65315 4.69518 4.72066 4.85529 4.91133 4.92079 5.00889 5.03938 5.17753 5.24244 5.31423 5.33284 5.48469 5.61417 5.80218 6.13590 6.24925 6.61419 6.87235 7.00347 7.26748 7.64042 8.17592 9.08057 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.002640 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.248812 B =10603.595868 C =11840.801143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.282 6.282 3 C -0.058 4.058 4 C -0.086 4.086 5 H 0.121 0.879 6 C -0.143 4.143 7 C 0.522 3.478 8 O -0.583 6.583 9 N -0.708 5.708 10 C 0.218 3.782 11 C -0.271 4.271 12 C 0.060 3.940 13 N -0.338 5.338 14 N -0.361 5.361 15 C 0.097 3.903 16 C 0.200 3.800 17 N -0.610 5.610 18 C -0.269 4.269 19 H 0.072 0.928 20 C -0.038 4.038 21 N -0.922 5.922 22 Si 0.967 3.033 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.270 1.270 26 C 0.159 3.841 27 C 0.127 3.873 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.213 0.787 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.037 0.963 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.480 -14.202 8.492 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.057 6.057 3 C -0.207 4.207 4 C -0.108 4.108 5 H 0.139 0.861 6 C -0.200 4.200 7 C 0.307 3.693 8 O -0.463 6.463 9 N -0.359 5.359 10 C 0.094 3.906 11 C -0.284 4.284 12 C -0.126 4.126 13 N -0.159 5.159 14 N -0.141 5.141 15 C -0.035 4.035 16 C 0.073 3.927 17 N -0.333 5.333 18 C -0.399 4.399 19 H 0.090 0.910 20 C -0.234 4.234 21 N -0.566 5.566 22 Si 0.796 3.204 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.194 1.194 26 C 0.032 3.968 27 C 0.004 3.996 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.229 0.771 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.912 -14.202 8.765 20.504 hybrid contribution -0.781 1.635 -1.050 2.094 sum -12.693 -12.568 7.715 19.457 Atomic orbital electron populations 1.23464 0.91870 1.07515 1.05679 1.86765 1.10089 1.10704 1.98120 1.23109 0.98002 0.93940 1.05636 1.21012 0.94872 0.92048 1.02890 0.86108 1.21834 1.01517 1.02428 0.94266 1.20816 0.82275 0.91155 0.75010 1.90687 1.48070 1.55824 1.51762 1.46113 1.07329 1.09009 1.73458 1.19181 0.87970 0.81563 1.01924 1.19541 0.96091 1.21394 0.91356 1.24281 0.89196 0.98452 1.00632 1.77210 1.22616 1.26251 0.89813 1.48779 1.07054 1.53950 1.04362 1.21988 0.85605 0.97768 0.98176 1.20155 0.90605 0.99965 0.81926 1.44448 1.02716 1.59471 1.26685 1.19410 1.00314 1.20404 0.99755 0.91022 1.25701 0.98613 0.97484 1.01643 1.70069 1.12034 1.40169 1.34367 0.85278 0.76734 0.77792 0.80636 1.21864 1.21661 1.19438 1.21160 0.89708 0.93484 0.92478 1.22435 0.84448 1.03138 0.89547 0.89824 0.89912 0.86711 0.89908 0.90209 0.89889 0.92576 0.90798 0.75393 0.90136 0.92424 0.77090 0.90678 0.91075 0.93676 0.94556 0.89076 0.91217 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.76 113.37 1.22 -0.07 16 2 S -0.28 -4.59 21.19 -56.49 -1.20 -5.79 16 3 C -0.06 -1.05 4.73 71.98 0.34 -0.71 16 4 C -0.09 -1.48 2.72 -11.54 -0.03 -1.51 16 5 H 0.12 1.72 8.14 -2.39 -0.02 1.71 16 6 C -0.14 -2.26 8.92 71.98 0.64 -1.62 16 7 C 0.52 12.05 7.15 87.66 0.63 12.68 16 8 O -0.58 -17.90 15.92 -3.05 -0.05 -17.95 16 9 N -0.71 -15.35 5.44 -466.79 -2.54 -17.89 16 10 C 0.22 5.62 5.95 85.63 0.51 6.13 16 11 C -0.27 -8.20 5.46 -20.24 -0.11 -8.31 16 12 C 0.06 1.80 11.97 85.26 1.02 2.82 16 13 N -0.34 -12.62 12.61 -56.80 -0.72 -13.33 16 14 N -0.36 -14.43 4.03 -333.29 -1.34 -15.77 16 15 C 0.10 3.55 6.71 41.31 0.28 3.82 16 16 C 0.20 7.57 6.66 85.55 0.57 8.14 16 17 N -0.61 -27.85 2.99 -700.27 -2.09 -29.94 16 18 C -0.27 -13.59 9.66 84.03 0.81 -12.78 16 19 H 0.07 3.55 7.90 -2.91 -0.02 3.53 16 20 C -0.04 -1.92 4.90 84.86 0.42 -1.51 16 21 N -0.92 -49.06 10.26 21.65 0.22 -48.84 16 22 Si 0.97 41.91 29.60 68.60 2.03 43.94 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 C 0.16 6.81 5.58 86.51 0.48 7.29 16 27 C 0.13 5.28 7.36 86.61 0.64 5.92 16 28 H 0.08 0.83 8.14 -2.40 -0.02 0.81 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.60 7.96 -2.39 -0.02 1.58 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.24 7.13 -2.38 -0.02 1.22 16 34 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.05 7.57 -2.39 -0.02 1.03 16 36 H 0.41 7.63 7.88 -92.71 -0.73 6.90 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.21 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.08 2.90 8.01 -2.39 -0.02 2.88 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 42 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 4.34 5.93 -2.38 -0.01 4.33 16 45 H 0.07 3.39 7.21 -2.39 -0.02 3.37 16 46 H 0.09 3.16 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -62.76 387.41 1.98 -60.78 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.25 Total: 24.49 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 7.41 Total: 20.29 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -6.47 Total: -125.77 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -4.59 SS G_CDS: -1.20 Total: -5.79 kcal Total: -62.76 1.98 -60.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128279817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.915 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds