Wall clock time and date at job start Tue Mar 31 2020 21:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81406 * 102.99944 * 2 1 4 4 C 1.53004 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46943 * 54.99937 * 4 3 2 6 6 C 1.52999 * 109.47129 * 294.99912 * 4 3 2 7 7 C 1.50698 * 109.46944 * 174.99757 * 4 3 2 8 8 O 1.21279 * 120.00345 * 0.02562 * 7 4 3 9 9 N 1.34780 * 120.00014 * 179.97438 * 7 4 3 10 10 C 1.46498 * 120.00145 * 180.02562 * 9 7 4 11 11 C 1.50697 * 109.47143 * 179.97438 * 10 9 7 12 12 C 1.40070 * 126.12894 * 259.69313 * 11 10 9 13 13 N 1.31014 * 108.25691 * 179.85382 * 12 11 10 14 14 N 1.39749 * 108.17421 * 0.60274 * 13 12 11 15 15 C 1.34651 * 126.12307 * 79.99769 * 11 10 9 16 16 C 1.51031 * 127.90978 * 359.65752 * 15 11 10 17 17 N 1.47504 * 107.00105 * 169.52402 * 16 15 11 18 18 C 1.36943 * 121.00870 * 222.89973 * 17 16 15 19 19 H 1.08003 * 119.99301 * 155.91678 * 18 17 16 20 20 C 1.38805 * 120.00126 * 335.91278 * 18 17 16 21 21 N 1.31616 * 120.00599 * 344.46200 * 20 18 17 22 22 Si 1.86804 * 119.99725 * 164.45842 * 20 18 17 23 23 H 1.48500 * 109.47057 * 90.00292 * 22 20 18 24 24 H 1.48495 * 109.47129 * 210.00140 * 22 20 18 25 25 H 1.48502 * 109.46926 * 330.00165 * 22 20 18 26 26 C 1.47083 * 117.97566 * 42.92453 * 17 16 15 27 27 C 1.46555 * 127.32001 * 179.19032 * 14 13 12 28 28 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47341 * 300.00422 * 1 2 3 30 30 H 1.09005 * 109.46815 * 59.99776 * 1 2 3 31 31 H 1.08997 * 109.47013 * 60.00220 * 3 2 1 32 32 H 1.08993 * 109.47300 * 299.99570 * 3 2 1 33 33 H 1.08998 * 109.46963 * 180.02562 * 6 4 3 34 34 H 1.08996 * 109.47198 * 300.00405 * 6 4 3 35 35 H 1.09005 * 109.46975 * 60.00389 * 6 4 3 36 36 H 0.97002 * 119.99980 * 0.02562 * 9 7 4 37 37 H 1.09003 * 109.47127 * 300.00126 * 10 9 7 38 38 H 1.09007 * 109.47205 * 60.00258 * 10 9 7 39 39 H 1.08001 * 125.86969 * 0.03590 * 12 11 10 40 40 H 1.08998 * 109.94984 * 288.89610 * 16 15 11 41 41 H 1.09002 * 109.95043 * 50.15067 * 16 15 11 42 42 H 0.96995 * 120.00768 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.51573 * 56.34055 * 26 17 16 44 44 H 1.08995 * 109.51141 * 176.49890 * 26 17 16 45 45 H 1.08997 * 109.51116 * 41.59189 * 27 14 13 46 46 H 1.09002 * 109.50444 * 281.45515 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.1701 1.3952 -0.8409 6 6 4.3172 1.3919 1.3083 7 6 4.0820 3.4030 -0.1232 8 8 3.1955 4.2267 -0.2036 9 7 5.3710 3.7962 -0.1437 10 6 5.7012 5.2184 -0.2636 11 6 7.1985 5.3884 -0.2618 12 6 7.9841 5.7782 0.8304 13 7 9.2359 5.8103 0.4449 14 7 9.2851 5.4561 -0.9061 15 6 8.0202 5.1982 -1.3114 16 6 7.6523 4.7712 -2.7126 17 7 8.8542 4.9522 -3.5483 18 6 8.7668 5.4992 -4.8007 19 1 9.6278 5.9800 -5.2411 20 6 7.5718 5.4355 -5.5040 21 7 6.6264 4.6036 -5.1214 22 14 7.3054 6.5308 -6.9936 23 1 7.7742 5.8280 -8.2149 24 1 5.8597 6.8429 -7.1263 25 1 8.0706 7.7921 -6.8238 26 6 10.1492 4.5268 -2.9957 27 6 10.4732 5.3737 -1.7603 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8032 2.2371 0.8900 32 1 1.8032 2.2372 -0.8900 33 1 5.4002 1.5151 1.3089 34 1 3.8894 1.9366 2.1498 35 1 4.0716 0.3337 1.3978 36 1 6.0801 3.1374 -0.0790 37 1 5.2919 5.6092 -1.1952 38 1 5.2731 5.7630 0.5781 39 1 7.6208 6.0093 1.8208 40 1 7.3519 3.7234 -2.7152 41 1 6.8401 5.3928 -3.0896 42 1 5.7915 4.5588 -5.6131 43 1 10.0967 3.4754 -2.7128 44 1 10.9279 4.6643 -3.7458 45 1 11.2892 4.9109 -1.2053 46 1 10.7669 6.3758 -2.0727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128279819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:21 Heat of formation + Delta-G solvation = 38.281299 kcal Electronic energy + Delta-G solvation = -27376.947795 eV Core-core repulsion = 23622.169544 eV Total energy + Delta-G solvation = -3754.778251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43228 -40.82757 -37.97364 -36.18624 -35.57745 -34.61925 -32.87107 -31.82090 -30.34484 -29.87934 -28.15079 -27.78590 -26.52115 -25.18986 -24.06387 -23.25269 -21.59915 -20.95629 -19.94339 -18.54632 -18.44429 -17.68744 -17.13670 -16.89873 -16.65447 -16.54361 -16.32158 -15.58410 -15.47798 -15.33297 -15.06064 -14.90859 -14.70269 -14.56668 -14.34033 -14.00038 -13.98740 -13.75606 -13.35463 -13.25102 -13.07912 -12.99492 -12.94503 -12.72163 -12.63158 -12.35417 -12.33477 -12.20112 -12.03689 -11.92271 -11.61449 -11.02895 -10.83571 -10.76854 -10.06580 -10.02877 -9.38655 -8.95211 -8.65801 -7.99331 -5.42624 0.64663 0.93989 1.44725 1.48282 1.55113 1.59520 1.62032 1.65002 1.68621 2.44388 2.56757 3.20104 3.42993 3.56665 3.60993 3.80398 3.82440 3.88032 4.14889 4.19610 4.23970 4.30334 4.33249 4.36959 4.37934 4.46304 4.55544 4.66975 4.76128 4.79118 4.87880 4.89104 4.90171 4.93944 5.00012 5.02553 5.24150 5.28352 5.36740 5.46594 5.58113 5.76215 6.09125 6.19949 6.58398 6.80712 6.98827 7.24261 7.65204 8.16180 9.09901 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.003274 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.871788 B = 8550.787926 C =10371.376704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.282 6.282 3 C -0.057 4.057 4 C -0.090 4.090 5 H 0.107 0.893 6 C -0.137 4.137 7 C 0.521 3.479 8 O -0.584 6.584 9 N -0.707 5.707 10 C 0.216 3.784 11 C -0.274 4.274 12 C 0.068 3.932 13 N -0.326 5.326 14 N -0.367 5.367 15 C 0.095 3.905 16 C 0.250 3.750 17 N -0.616 5.616 18 C -0.268 4.268 19 H 0.079 0.921 20 C -0.042 4.042 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.272 1.272 26 C 0.128 3.872 27 C 0.117 3.883 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.408 0.592 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.215 0.785 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.252 0.748 43 H 0.041 0.959 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -7.217 13.601 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.057 6.057 3 C -0.206 4.206 4 C -0.112 4.112 5 H 0.125 0.875 6 C -0.194 4.194 7 C 0.306 3.694 8 O -0.465 6.465 9 N -0.358 5.358 10 C 0.092 3.908 11 C -0.287 4.287 12 C -0.119 4.119 13 N -0.146 5.146 14 N -0.148 5.148 15 C -0.036 4.036 16 C 0.123 3.877 17 N -0.339 5.339 18 C -0.397 4.397 19 H 0.097 0.903 20 C -0.238 4.238 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.207 1.207 24 H -0.223 1.223 25 H -0.197 1.197 26 C 0.001 3.999 27 C -0.006 4.006 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.244 0.756 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.232 0.768 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.117 0.883 45 H 0.130 0.870 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.662 -7.290 13.706 15.751 hybrid contribution -1.665 1.248 -1.452 2.537 sum -4.328 -6.042 12.254 14.332 Atomic orbital electron populations 1.23469 0.91693 1.07595 1.05686 1.86748 1.10268 1.10541 1.98116 1.23088 0.97848 0.94088 1.05550 1.21026 0.95093 0.91946 1.03145 0.87460 1.21803 1.01483 1.02427 0.93711 1.20843 0.82318 0.91239 0.74964 1.90667 1.48083 1.55883 1.51852 1.46070 1.07304 1.09077 1.73314 1.19167 0.88780 0.81695 1.01155 1.19528 0.95777 1.19581 0.93780 1.24250 0.89198 0.98198 1.00226 1.77171 1.21560 1.24378 0.91519 1.48682 1.06577 1.52077 1.07478 1.22220 0.86029 0.97298 0.98098 1.19343 0.89920 0.97830 0.80611 1.44438 1.02461 1.72381 1.14661 1.19475 0.98397 1.29550 0.92286 0.90346 1.25701 0.97984 0.99342 1.00763 1.70078 1.07421 1.37171 1.42864 0.85324 0.76569 0.79135 0.79712 1.20734 1.22269 1.19701 1.21435 0.89289 0.95518 0.93638 1.22533 0.84768 1.02535 0.90717 0.86530 0.89463 0.90248 0.89365 0.90849 0.90710 0.91660 0.89880 0.75589 0.93910 0.89670 0.76817 0.94705 0.91052 0.93862 0.94136 0.88287 0.86970 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 10.76 113.37 1.22 -0.42 16 2 S -0.28 -5.69 21.19 -56.49 -1.20 -6.88 16 3 C -0.06 -1.30 4.73 71.98 0.34 -0.96 16 4 C -0.09 -2.05 2.72 -11.54 -0.03 -2.08 16 5 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 6 C -0.14 -2.38 8.92 71.98 0.64 -1.74 16 7 C 0.52 15.26 7.15 87.66 0.63 15.88 16 8 O -0.58 -21.44 15.92 -3.03 -0.05 -21.48 16 9 N -0.71 -19.75 5.44 -466.79 -2.54 -22.29 16 10 C 0.22 6.77 5.95 85.63 0.51 7.28 16 11 C -0.27 -9.00 5.46 -20.24 -0.11 -9.11 16 12 C 0.07 1.97 11.97 85.26 1.02 2.99 16 13 N -0.33 -10.98 12.61 -56.80 -0.72 -11.70 16 14 N -0.37 -13.25 4.03 -334.04 -1.35 -14.60 16 15 C 0.10 3.67 6.71 41.31 0.28 3.95 16 16 C 0.25 11.44 5.11 85.55 0.44 11.88 16 17 N -0.62 -28.58 3.01 -701.16 -2.11 -30.69 16 18 C -0.27 -13.68 9.66 84.03 0.81 -12.87 16 19 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 20 C -0.04 -2.21 5.00 84.86 0.42 -1.78 16 21 N -0.93 -52.07 11.07 21.65 0.24 -51.83 16 22 Si 0.96 43.25 29.58 68.60 2.03 45.28 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 C 0.13 4.58 6.49 86.35 0.56 5.14 16 27 C 0.12 3.70 7.44 86.45 0.64 4.34 16 28 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 33 H 0.07 1.15 7.56 -2.39 -0.02 1.13 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.37 7.14 -2.38 -0.02 1.35 16 36 H 0.41 10.11 7.88 -92.71 -0.73 9.38 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.22 4.35 8.06 -2.91 -0.02 4.32 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 41 H 0.07 3.78 6.46 -2.39 -0.02 3.77 16 42 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 3.21 7.94 -2.39 -0.02 3.19 16 45 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 46 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -66.08 389.15 1.93 -64.15 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.25 Total: 27.53 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 7.37 Total: 22.51 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -6.47 Total: -131.11 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -5.69 SS G_CDS: -1.20 Total: -6.88 kcal Total: -66.08 1.93 -64.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128279819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.427 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds