Wall clock time and date at job start Tue Mar 31 2020 20:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81397 * 103.00057 * 2 1 4 4 H 1.08999 * 109.47108 * 55.00047 * 3 2 1 5 5 C 1.52998 * 109.47116 * 294.99855 * 3 2 1 6 6 C 1.53008 * 109.46928 * 175.00073 * 3 2 1 7 7 C 1.50702 * 109.46812 * 295.00101 * 6 3 2 8 8 O 1.21279 * 120.00343 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99604 * 180.02562 * 7 6 3 10 10 C 1.46497 * 119.99861 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.40071 * 126.12777 * 259.87623 * 11 10 9 13 13 N 1.31008 * 108.25933 * 179.83696 * 12 11 10 14 14 N 1.39752 * 108.17587 * 0.36260 * 13 12 11 15 15 C 1.34642 * 126.12436 * 80.00440 * 11 10 9 16 16 C 1.51035 * 127.91038 * 359.68600 * 15 11 10 17 17 N 1.47502 * 107.00120 * 169.72279 * 16 15 11 18 18 C 1.36940 * 121.01057 * 222.89486 * 17 16 15 19 19 H 1.08000 * 119.99632 * 155.91392 * 18 17 16 20 20 C 1.38810 * 120.00291 * 335.92287 * 18 17 16 21 21 N 1.31616 * 119.99791 * 344.44867 * 20 18 17 22 22 Si 1.86801 * 120.00237 * 164.45215 * 20 18 17 23 23 H 1.48499 * 109.46896 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46773 * 119.99548 * 22 20 18 25 25 H 1.48494 * 109.47008 * 239.99575 * 22 20 18 26 26 C 1.47090 * 117.97851 * 42.91837 * 17 16 15 27 27 C 1.46544 * 127.31949 * 179.45101 * 14 13 12 28 28 H 1.09004 * 109.47257 * 59.99738 * 1 2 3 29 29 H 1.08997 * 109.47242 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47117 * 299.99919 * 1 2 3 31 31 H 1.08999 * 109.47289 * 300.00081 * 5 3 2 32 32 H 1.09003 * 109.46780 * 60.00408 * 5 3 2 33 33 H 1.09007 * 109.46920 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46552 * 175.00584 * 6 3 2 35 35 H 1.08991 * 109.47020 * 55.00182 * 6 3 2 36 36 H 0.96995 * 120.00250 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.47393 * 60.00295 * 10 9 7 38 38 H 1.09004 * 109.47674 * 300.00146 * 10 9 7 39 39 H 1.08007 * 125.86781 * 0.03833 * 12 11 10 40 40 H 1.09005 * 109.94596 * 289.08950 * 16 15 11 41 41 H 1.08995 * 109.95446 * 50.34958 * 16 15 11 42 42 H 0.97001 * 120.00162 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.51221 * 56.33698 * 26 17 16 44 44 H 1.08996 * 109.51216 * 176.48957 * 26 17 16 45 45 H 1.09003 * 109.51603 * 41.61815 * 27 14 13 46 46 H 1.09004 * 109.51358 * 281.47209 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3074 6 6 3.7370 1.9411 0.1257 7 6 4.1919 1.4268 1.4672 8 8 3.3841 0.9663 2.2459 9 7 5.4965 1.4786 1.8017 10 6 5.9387 0.9792 3.1060 11 6 7.4307 1.1513 3.2302 12 6 8.3956 0.1538 3.0410 13 7 9.5779 0.6849 3.2318 14 7 9.4030 2.0329 3.5562 15 6 8.0748 2.2909 3.5455 16 6 7.4746 3.6455 3.8384 17 7 8.5596 4.4925 4.3684 18 6 8.3517 5.3146 5.4436 19 1 9.1853 5.6212 6.0581 20 6 7.0696 5.7538 5.7439 21 7 6.1105 5.6457 4.8491 22 14 6.7055 6.4984 7.4180 23 1 7.9445 6.5058 8.2365 24 1 6.2175 7.8903 7.2450 25 1 5.6648 5.6906 8.1032 26 6 9.8716 4.4276 3.7066 27 6 10.4461 3.0154 3.8631 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2354 1.9149 -2.1492 32 1 0.6635 2.2778 -1.3969 33 1 1.9876 3.4638 -1.3071 34 1 3.9902 2.9975 0.0367 35 1 4.2339 1.3804 -0.6659 36 1 6.1426 1.8466 1.1788 37 1 5.6858 -0.0772 3.1954 38 1 5.4415 1.5401 3.8975 39 1 8.1989 -0.8755 2.7792 40 1 7.0762 4.0817 2.9223 41 1 6.6822 3.5487 4.5805 42 1 5.2147 5.9530 5.0587 43 1 9.7570 4.6587 2.6476 44 1 10.5473 5.1487 4.1663 45 1 11.2827 2.8847 3.1767 46 1 10.7896 2.8737 4.8879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128316721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:41 Heat of formation + Delta-G solvation = 61.590088 kcal Electronic energy + Delta-G solvation = -27324.994722 eV Core-core repulsion = 23571.227216 eV Total energy + Delta-G solvation = -3753.767506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.97828 -39.31414 -36.32365 -34.99831 -34.34077 -32.98152 -31.31015 -30.22763 -29.54955 -28.83250 -27.66229 -25.98383 -24.69114 -23.49679 -22.19764 -21.72965 -20.17796 -20.00297 -18.40896 -17.04860 -16.73508 -16.64792 -16.03980 -15.70295 -15.34528 -15.04285 -14.72249 -14.32167 -14.14310 -13.88488 -13.77215 -13.59939 -13.43250 -13.31530 -13.14393 -12.90831 -12.71085 -12.43741 -12.18644 -11.99800 -11.69689 -11.59231 -11.46995 -11.33323 -11.28812 -10.99907 -10.89010 -10.73522 -10.18987 -10.16963 -10.09585 -9.83605 -9.59112 -8.92134 -8.65382 -8.54924 -7.91364 -7.46634 -7.09892 -6.03315 -3.45786 1.68636 2.42886 2.57240 2.95890 3.00510 3.02910 3.27638 3.36248 3.37466 3.77618 4.30145 4.53121 4.72889 4.96424 5.01188 5.05286 5.06143 5.11505 5.20103 5.21304 5.34338 5.38187 5.41485 5.52632 5.55838 5.59617 5.60391 5.62407 5.73094 5.76738 5.87999 5.92793 6.19264 6.21743 6.38918 6.40417 6.56622 6.80718 6.90770 7.10027 7.14267 7.56630 7.60682 7.87529 8.07800 8.24239 8.57871 8.90499 9.52868 10.05423 11.07640 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.003211 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.682276 B = 8717.230574 C =10380.550253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.240 6.240 3 C -0.042 4.042 4 H 0.095 0.905 5 C -0.148 4.148 6 C -0.125 4.125 7 C 0.507 3.493 8 O -0.525 6.525 9 N -0.721 5.721 10 C 0.212 3.788 11 C -0.287 4.287 12 C 0.056 3.944 13 N -0.319 5.319 14 N -0.358 5.358 15 C 0.118 3.882 16 C 0.232 3.768 17 N -0.597 5.597 18 C -0.263 4.263 19 H 0.074 0.926 20 C 0.008 3.992 21 N -0.903 5.903 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.286 1.286 26 C 0.129 3.871 27 C 0.114 3.886 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.398 0.602 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.175 0.825 40 H 0.056 0.944 41 H 0.109 0.891 42 H 0.259 0.741 43 H 0.036 0.964 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 -6.895 -11.948 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.014 6.014 3 C -0.171 4.171 4 H 0.113 0.887 5 C -0.207 4.207 6 C -0.166 4.166 7 C 0.292 3.708 8 O -0.401 6.401 9 N -0.372 5.372 10 C 0.088 3.912 11 C -0.299 4.299 12 C -0.130 4.130 13 N -0.138 5.138 14 N -0.140 5.140 15 C -0.013 4.013 16 C 0.105 3.895 17 N -0.319 5.319 18 C -0.392 4.392 19 H 0.092 0.908 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.737 3.263 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.001 3.999 27 C -0.010 4.010 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.192 0.808 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.129 -8.140 -11.261 14.243 hybrid contribution -1.491 1.669 0.569 2.309 sum -4.620 -6.471 -10.692 13.325 Atomic orbital electron populations 1.23364 0.95336 1.06034 1.04549 1.86876 1.06199 1.10617 1.97720 1.22864 0.98067 0.94818 1.01396 0.88682 1.22111 1.01348 1.01091 0.96133 1.21530 0.94341 1.03916 0.96843 1.20365 0.82505 0.79179 0.88785 1.90740 1.52679 1.44840 1.51811 1.46168 1.07969 1.63905 1.19196 1.19268 0.88508 0.98918 0.84517 1.19454 0.95626 0.93437 1.21389 1.23681 0.89727 0.99533 1.00109 1.77169 1.22969 0.90059 1.23653 1.48494 1.05605 1.07099 1.52761 1.22571 0.84546 0.99314 0.94902 1.19905 0.90625 0.79550 0.99413 1.44220 1.06099 1.46931 1.34697 1.19201 0.93904 1.23714 1.02343 0.90837 1.25030 0.96973 0.98728 0.98377 1.69947 1.02237 1.50064 1.32405 0.86143 0.78210 0.78484 0.83442 1.20168 1.21455 1.21241 1.21272 0.89862 0.91759 0.97030 1.22540 0.88741 0.88550 1.01170 0.90973 0.88502 0.90563 0.91329 0.92394 0.91428 0.87430 0.88398 0.76893 0.91433 0.91015 0.80769 0.92642 0.87340 0.93133 0.94629 0.89740 0.90211 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.45 101.05 1.06 -0.09 16 2 S -0.24 -2.98 20.24 -107.50 -2.18 -5.15 16 3 C -0.04 -0.47 2.44 -26.73 -0.07 -0.53 16 4 H 0.09 1.19 7.96 -51.92 -0.41 0.78 16 5 C -0.15 -1.21 9.10 37.16 0.34 -0.87 16 6 C -0.13 -1.37 5.17 -27.88 -0.14 -1.52 16 7 C 0.51 7.51 7.54 -10.98 -0.08 7.43 16 8 O -0.52 -9.61 14.79 5.56 0.08 -9.53 16 9 N -0.72 -10.39 5.55 -61.47 -0.34 -10.73 16 10 C 0.21 3.44 5.95 -5.20 -0.03 3.40 16 11 C -0.29 -4.97 5.46 -105.21 -0.57 -5.55 16 12 C 0.06 0.92 11.97 -17.22 -0.21 0.72 16 13 N -0.32 -5.89 12.61 30.70 0.39 -5.51 16 14 N -0.36 -6.85 4.03 -56.94 -0.23 -7.07 16 15 C 0.12 2.33 6.71 -82.17 -0.55 1.77 16 16 C 0.23 5.15 5.11 -4.48 -0.02 5.13 16 17 N -0.60 -13.74 3.01 -172.96 -0.52 -14.26 16 18 C -0.26 -6.67 9.66 -15.06 -0.15 -6.81 16 19 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 20 C 0.01 0.21 5.00 -17.43 -0.09 0.13 16 21 N -0.90 -24.29 11.07 55.49 0.61 -23.68 16 22 Si 0.91 20.70 29.58 -169.99 -5.03 15.67 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.13 2.38 6.49 -3.59 -0.02 2.36 16 27 C 0.11 1.92 7.44 -3.88 -0.03 1.89 16 28 H 0.07 0.54 7.14 -51.92 -0.37 0.17 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.44 6.92 -51.93 -0.36 0.08 16 33 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 5.11 8.46 -40.82 -0.35 4.77 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.18 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.11 2.74 6.46 -51.93 -0.34 2.40 16 42 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -30.90 387.56 -9.22 -40.13 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.28 Total: 6.82 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.57 Total: 7.47 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.09 Total: -61.25 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.18 Total: -5.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.90 -9.22 -40.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128316721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.716 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds