Wall clock time and date at job start Tue Mar 31 2020 20:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81397 * 103.00057 * 2 1 4 4 H 1.08999 * 109.47108 * 55.00047 * 3 2 1 5 5 C 1.52998 * 109.47116 * 294.99855 * 3 2 1 6 6 C 1.53008 * 109.46928 * 175.00073 * 3 2 1 7 7 C 1.50702 * 109.46812 * 295.00101 * 6 3 2 8 8 O 1.21279 * 120.00343 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99604 * 180.02562 * 7 6 3 10 10 C 1.46497 * 119.99861 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.40071 * 126.12777 * 259.87623 * 11 10 9 13 13 N 1.31008 * 108.25933 * 179.83696 * 12 11 10 14 14 N 1.39752 * 108.17587 * 0.36260 * 13 12 11 15 15 C 1.34642 * 126.12436 * 80.00440 * 11 10 9 16 16 C 1.51035 * 127.91038 * 359.68600 * 15 11 10 17 17 N 1.47502 * 107.00120 * 169.72279 * 16 15 11 18 18 C 1.36940 * 121.01057 * 222.89486 * 17 16 15 19 19 H 1.08000 * 119.99632 * 155.91392 * 18 17 16 20 20 C 1.38810 * 120.00291 * 335.92287 * 18 17 16 21 21 N 1.31616 * 119.99791 * 344.44867 * 20 18 17 22 22 Si 1.86801 * 120.00237 * 164.45215 * 20 18 17 23 23 H 1.48499 * 109.46896 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46773 * 119.99548 * 22 20 18 25 25 H 1.48494 * 109.47008 * 239.99575 * 22 20 18 26 26 C 1.47090 * 117.97851 * 42.91837 * 17 16 15 27 27 C 1.46544 * 127.31949 * 179.45101 * 14 13 12 28 28 H 1.09004 * 109.47257 * 59.99738 * 1 2 3 29 29 H 1.08997 * 109.47242 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47117 * 299.99919 * 1 2 3 31 31 H 1.08999 * 109.47289 * 300.00081 * 5 3 2 32 32 H 1.09003 * 109.46780 * 60.00408 * 5 3 2 33 33 H 1.09007 * 109.46920 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46552 * 175.00584 * 6 3 2 35 35 H 1.08991 * 109.47020 * 55.00182 * 6 3 2 36 36 H 0.96995 * 120.00250 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.47393 * 60.00295 * 10 9 7 38 38 H 1.09004 * 109.47674 * 300.00146 * 10 9 7 39 39 H 1.08007 * 125.86781 * 0.03833 * 12 11 10 40 40 H 1.09005 * 109.94596 * 289.08950 * 16 15 11 41 41 H 1.08995 * 109.95446 * 50.34958 * 16 15 11 42 42 H 0.97001 * 120.00162 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.51221 * 56.33698 * 26 17 16 44 44 H 1.08996 * 109.51216 * 176.48957 * 26 17 16 45 45 H 1.09003 * 109.51603 * 41.61815 * 27 14 13 46 46 H 1.09004 * 109.51358 * 281.47209 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3074 6 6 3.7370 1.9411 0.1257 7 6 4.1919 1.4268 1.4672 8 8 3.3841 0.9663 2.2459 9 7 5.4965 1.4786 1.8017 10 6 5.9387 0.9792 3.1060 11 6 7.4307 1.1513 3.2302 12 6 8.3956 0.1538 3.0410 13 7 9.5779 0.6849 3.2318 14 7 9.4030 2.0329 3.5562 15 6 8.0748 2.2909 3.5455 16 6 7.4746 3.6455 3.8384 17 7 8.5596 4.4925 4.3684 18 6 8.3517 5.3146 5.4436 19 1 9.1853 5.6212 6.0581 20 6 7.0696 5.7538 5.7439 21 7 6.1105 5.6457 4.8491 22 14 6.7055 6.4984 7.4180 23 1 7.9445 6.5058 8.2365 24 1 6.2175 7.8903 7.2450 25 1 5.6648 5.6906 8.1032 26 6 9.8716 4.4276 3.7066 27 6 10.4461 3.0154 3.8631 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2354 1.9149 -2.1492 32 1 0.6635 2.2778 -1.3969 33 1 1.9876 3.4638 -1.3071 34 1 3.9902 2.9975 0.0367 35 1 4.2339 1.3804 -0.6659 36 1 6.1426 1.8466 1.1788 37 1 5.6858 -0.0772 3.1954 38 1 5.4415 1.5401 3.8975 39 1 8.1989 -0.8755 2.7792 40 1 7.0762 4.0817 2.9223 41 1 6.6822 3.5487 4.5805 42 1 5.2147 5.9530 5.0587 43 1 9.7570 4.6587 2.6476 44 1 10.5473 5.1487 4.1663 45 1 11.2827 2.8847 3.1767 46 1 10.7896 2.8737 4.8879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128316721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:40 Heat of formation + Delta-G solvation = 42.318342 kcal Electronic energy + Delta-G solvation = -27325.830408 eV Core-core repulsion = 23571.227216 eV Total energy + Delta-G solvation = -3754.603192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.42156 -40.52668 -37.96948 -36.18733 -35.38255 -34.61613 -32.91019 -31.82678 -30.68685 -29.86442 -28.66584 -27.67505 -26.07741 -25.10727 -23.38556 -22.99421 -21.57797 -21.22053 -19.95646 -18.54211 -18.27625 -17.57627 -17.44959 -17.01196 -16.72175 -16.35193 -16.22674 -15.54088 -15.46554 -15.23972 -15.03866 -14.88556 -14.77629 -14.55564 -14.24209 -14.03296 -13.93018 -13.53280 -13.35980 -13.17815 -13.02134 -12.96851 -12.80887 -12.73639 -12.60380 -12.32283 -12.30334 -12.12664 -12.03073 -11.88861 -11.60880 -10.88588 -10.78309 -10.66726 -10.06205 -9.92813 -9.37479 -8.95072 -8.41734 -7.99215 -5.42374 0.84821 0.93843 1.44276 1.48407 1.55924 1.60144 1.66712 1.75676 1.83118 2.44355 2.59103 3.20193 3.43403 3.61528 3.65915 3.80950 3.85022 4.14505 4.19621 4.23691 4.26258 4.32100 4.34084 4.37698 4.39855 4.48499 4.61453 4.67822 4.76236 4.79126 4.82505 4.88624 4.90332 4.95626 5.02131 5.03952 5.25188 5.27445 5.37463 5.56843 5.58935 5.76066 6.10102 6.20307 6.70881 6.80638 6.99175 7.40904 7.65336 8.16431 9.10173 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.003211 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.682276 B = 8717.230574 C =10380.550253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.301 6.301 3 C -0.033 4.033 4 H 0.073 0.927 5 C -0.140 4.140 6 C -0.119 4.119 7 C 0.501 3.499 8 O -0.564 6.564 9 N -0.715 5.715 10 C 0.220 3.780 11 C -0.274 4.274 12 C 0.066 3.934 13 N -0.327 5.327 14 N -0.367 5.367 15 C 0.095 3.905 16 C 0.251 3.749 17 N -0.616 5.616 18 C -0.266 4.266 19 H 0.079 0.921 20 C -0.042 4.042 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.265 1.265 24 H -0.289 1.289 25 H -0.296 1.296 26 C 0.129 3.871 27 C 0.117 3.883 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.407 0.593 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.213 0.787 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.252 0.748 43 H 0.042 0.958 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 -7.453 -13.298 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.075 6.075 3 C -0.162 4.162 4 H 0.091 0.909 5 C -0.199 4.199 6 C -0.159 4.159 7 C 0.288 3.712 8 O -0.443 6.443 9 N -0.367 5.367 10 C 0.095 3.905 11 C -0.286 4.286 12 C -0.121 4.121 13 N -0.147 5.147 14 N -0.148 5.148 15 C -0.036 4.036 16 C 0.124 3.876 17 N -0.340 5.340 18 C -0.396 4.396 19 H 0.097 0.903 20 C -0.238 4.238 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.216 1.216 25 H -0.223 1.223 26 C 0.002 3.998 27 C -0.006 4.006 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.242 0.758 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.229 0.771 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.130 0.870 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.143 -8.686 -12.634 15.481 hybrid contribution -1.760 1.791 0.978 2.695 sum -3.903 -6.896 -11.656 14.094 Atomic orbital electron populations 1.23381 0.92257 1.06994 1.05283 1.87002 1.09816 1.12839 1.97848 1.22866 0.97822 0.93325 1.02223 0.90879 1.22067 1.01840 1.01492 0.94510 1.21590 0.94550 1.05065 0.94740 1.21078 0.81971 0.78281 0.89834 1.90720 1.53586 1.46615 1.53371 1.46079 1.08365 1.63678 1.18551 1.19061 0.87753 0.98961 0.84708 1.19550 0.96028 0.93062 1.19947 1.24225 0.88499 1.00738 0.98608 1.77162 1.23841 0.89656 1.24015 1.48686 1.05445 1.07712 1.53006 1.22213 0.85492 0.98743 0.97152 1.19339 0.89922 0.81047 0.97285 1.44449 1.07735 1.46864 1.34916 1.19515 0.93993 1.23002 1.03054 0.90347 1.25692 0.97133 0.99960 1.01005 1.70084 1.02132 1.51516 1.33753 0.85264 0.77912 0.77317 0.80297 1.18967 1.21602 1.22287 1.21437 0.87983 0.93395 0.97011 1.22542 0.88948 0.86974 1.02130 0.88949 0.87469 0.91040 0.90392 0.91678 0.90239 0.85531 0.86247 0.75799 0.90434 0.94145 0.77083 0.94511 0.91135 0.93869 0.94040 0.88255 0.86978 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.45 113.37 1.18 -0.74 16 2 S -0.30 -7.35 20.24 -56.49 -1.14 -8.49 16 3 C -0.03 -0.71 2.44 30.60 0.07 -0.63 16 4 H 0.07 1.87 7.96 -2.39 -0.02 1.85 16 5 C -0.14 -2.01 9.10 71.98 0.66 -1.35 16 6 C -0.12 -2.47 5.17 29.85 0.15 -2.32 16 7 C 0.50 14.93 7.54 87.66 0.66 15.59 16 8 O -0.56 -21.29 14.79 -3.03 -0.04 -21.34 16 9 N -0.71 -20.55 5.55 -466.79 -2.59 -23.14 16 10 C 0.22 7.21 5.95 85.63 0.51 7.72 16 11 C -0.27 -9.30 5.46 -20.24 -0.11 -9.41 16 12 C 0.07 2.00 11.97 85.26 1.02 3.02 16 13 N -0.33 -11.31 12.61 -56.79 -0.72 -12.02 16 14 N -0.37 -13.47 4.03 -334.04 -1.35 -14.81 16 15 C 0.10 3.74 6.71 41.30 0.28 4.01 16 16 C 0.25 11.51 5.11 85.55 0.44 11.95 16 17 N -0.62 -28.56 3.01 -701.13 -2.11 -30.67 16 18 C -0.27 -13.58 9.66 84.03 0.81 -12.77 16 19 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 20 C -0.04 -2.20 5.00 84.86 0.42 -1.77 16 21 N -0.93 -51.73 11.07 21.65 0.24 -51.49 16 22 Si 0.96 43.20 29.58 68.60 2.03 45.23 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 26 C 0.13 4.59 6.49 86.35 0.56 5.15 16 27 C 0.12 3.71 7.44 86.46 0.64 4.36 16 28 H 0.09 1.22 7.14 -2.39 -0.02 1.20 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.84 6.92 -2.39 -0.02 0.83 16 33 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.12 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.41 10.17 8.46 -92.71 -0.78 9.38 16 37 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.21 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.07 3.76 6.46 -2.39 -0.02 3.74 16 42 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 3.21 7.94 -2.39 -0.02 3.19 16 45 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -68.42 387.56 1.82 -66.60 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.20 Total: 27.32 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 7.31 Total: 22.81 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -6.52 Total: -132.13 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.04 Total: -21.34 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.14 Total: -8.49 kcal Total: -68.42 1.82 -66.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128316721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.918 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds