Wall clock time and date at job start Tue Mar 31 2020 21:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46896 * 109.47284 * 2 1 4 4 C 1.47847 * 111.00289 * 49.15520 * 3 2 1 5 5 C 1.54899 * 104.79592 * 146.36889 * 4 3 2 6 6 C 1.55135 * 101.65720 * 322.92942 * 5 4 3 7 7 H 1.08999 * 110.85564 * 277.20500 * 6 5 4 8 8 C 1.50694 * 110.70884 * 154.03732 * 6 5 4 9 9 N 1.30836 * 125.90066 * 306.61599 * 8 6 5 10 10 N 1.40087 * 108.20116 * 180.25944 * 9 8 6 11 11 H 0.97007 * 126.03094 * 179.73620 * 10 9 8 12 12 C 1.34940 * 107.93089 * 359.71660 * 10 9 8 13 13 C 1.35324 * 107.74641 * 0.02562 * 12 10 9 14 14 C 1.50698 * 126.03910 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.47013 * 260.02220 * 14 13 12 16 16 C 1.34770 * 119.99677 * 180.02562 * 15 14 13 17 17 O 1.21284 * 120.00294 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.00005 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.47234 * 180.02562 * 18 16 15 20 20 C 1.76194 * 99.99738 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00441 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00052 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00388 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99994 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00087 * 24 22 20 28 28 C 1.47448 * 111.00468 * 169.99927 * 3 2 1 29 29 H 1.09005 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47378 * 300.00155 * 1 2 3 31 31 H 1.08990 * 109.47036 * 60.00396 * 1 2 3 32 32 H 1.08994 * 109.47509 * 239.99598 * 2 1 3 33 33 H 1.09005 * 109.47400 * 119.99595 * 2 1 3 34 34 H 1.09003 * 110.36939 * 265.19760 * 4 3 2 35 35 H 1.09002 * 110.37230 * 27.42240 * 4 3 2 36 36 H 1.09009 * 110.98848 * 204.83822 * 5 4 3 37 37 H 1.08997 * 110.99598 * 81.02251 * 5 4 3 38 38 H 1.08003 * 126.13282 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.46826 * 140.02680 * 14 13 12 40 40 H 1.08993 * 109.47251 * 20.02718 * 14 13 12 41 41 H 0.96995 * 120.00085 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.47145 * 60.00045 * 18 16 15 43 43 H 1.09001 * 109.46839 * 299.99770 * 18 16 15 44 44 H 0.97005 * 119.99723 * 0.02562 * 23 22 20 45 45 H 1.09002 * 109.88774 * 117.32878 * 28 3 2 46 46 H 1.09002 * 110.01777 * 356.22201 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3452 2.1854 1.0441 5 6 2.4200 3.1905 1.5279 6 6 3.7056 2.3237 1.4765 7 1 3.8006 1.7168 2.3769 8 6 4.9248 3.1892 1.2886 9 7 5.0981 4.0751 0.3415 10 7 6.3601 4.6584 0.5137 11 1 6.7526 5.3452 -0.0478 12 6 6.9329 4.0966 1.5986 13 6 6.0650 3.1867 2.0987 14 6 6.2899 2.3198 3.3106 15 7 6.6989 0.9795 2.8832 16 6 6.9560 0.0283 3.8025 17 8 6.8484 0.2815 4.9837 18 6 7.3774 -1.3503 3.3629 19 16 7.6458 -2.3921 4.8185 20 6 8.1140 -3.8988 4.0342 21 1 8.1608 -3.9549 2.9567 22 6 8.4236 -5.0134 4.8012 23 7 8.3680 -4.9447 6.1145 24 14 8.9207 -6.6106 3.9697 25 1 9.1986 -7.6407 5.0026 26 1 7.8176 -7.0752 3.0907 27 1 10.1416 -6.3854 3.1549 28 6 3.4739 1.4313 0.2390 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.4915 2.7163 0.6229 35 1 1.0251 1.5448 1.8658 36 1 2.2138 3.5232 2.5453 37 1 2.4944 4.0398 0.8487 38 1 7.9092 4.3310 1.9966 39 1 5.3660 2.2517 3.8851 40 1 7.0719 2.7578 3.9307 41 1 6.7846 0.7769 1.9385 42 1 8.3016 -1.2820 2.7891 43 1 6.5957 -1.7884 2.7422 44 1 8.1103 -4.1152 6.5463 45 1 3.9785 1.8598 -0.6269 46 1 3.8529 0.4272 0.4296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130347851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:25 Heat of formation + Delta-G solvation = 4.185357 kcal Electronic energy + Delta-G solvation = -26590.175798 eV Core-core repulsion = 22833.919036 eV Total energy + Delta-G solvation = -3756.256762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46469 -40.52319 -40.00876 -36.09553 -34.99749 -34.73276 -32.59895 -32.02030 -30.48537 -30.32299 -29.07784 -27.15817 -26.30414 -24.25730 -23.63518 -21.80131 -21.53632 -21.30998 -20.42305 -20.23230 -19.02696 -17.84219 -17.34219 -16.99773 -16.77709 -16.61598 -16.20595 -15.71865 -15.68416 -15.43738 -15.17164 -14.90175 -14.76963 -14.48851 -14.36866 -13.97869 -13.85652 -13.77971 -13.67252 -13.41420 -13.11621 -12.72637 -12.66536 -12.49648 -12.23898 -12.22697 -11.95237 -11.94811 -11.85392 -11.55344 -11.46535 -11.12519 -11.08597 -10.37302 -10.30892 -10.12873 -9.65648 -9.29877 -8.91118 -8.84627 -6.25856 0.84806 1.18655 1.47853 1.55722 1.56909 1.61307 1.81633 1.92734 2.34175 2.47602 2.97488 3.03503 3.16576 3.44599 3.63826 3.68302 3.81800 3.91660 4.03769 4.17242 4.19917 4.21769 4.28192 4.32427 4.40087 4.40650 4.47991 4.55287 4.59939 4.71482 4.78569 4.86925 4.94930 4.96012 4.98541 5.04903 5.16606 5.24032 5.29436 5.40111 5.48429 5.65395 5.95808 6.08972 6.16725 6.38849 6.47954 6.65749 7.07538 7.19488 8.52541 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.002759 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.102005 B =10146.274231 C =11969.953838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 N -0.536 5.536 4 C 0.043 3.957 5 C -0.113 4.113 6 C -0.032 4.032 7 H 0.088 0.912 8 C 0.103 3.897 9 N -0.310 5.310 10 N -0.463 5.463 11 H 0.456 0.544 12 C 0.104 3.896 13 C -0.273 4.273 14 C 0.206 3.794 15 N -0.705 5.705 16 C 0.534 3.466 17 O -0.564 6.564 18 C -0.110 4.110 19 S -0.192 6.192 20 C -0.615 4.615 21 H 0.074 0.926 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.135 2.865 25 H -0.280 1.280 26 H -0.264 1.264 27 H -0.263 1.263 28 C 0.059 3.941 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.214 0.786 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.411 0.589 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.261 0.739 45 H 0.072 0.928 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 20.693 -16.742 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 N -0.261 5.261 4 C -0.084 4.084 5 C -0.152 4.152 6 C -0.053 4.053 7 H 0.106 0.894 8 C -0.065 4.065 9 N -0.133 5.133 10 N -0.171 5.171 11 H 0.303 0.697 12 C -0.046 4.046 13 C -0.285 4.285 14 C 0.082 3.918 15 N -0.358 5.358 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.262 4.262 19 S 0.035 5.965 20 C -0.763 4.763 21 H 0.092 0.908 22 C -0.222 4.222 23 N -0.549 5.549 24 Si 0.953 3.047 25 H -0.205 1.205 26 H -0.188 1.188 27 H -0.188 1.188 28 C -0.070 4.070 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.231 0.769 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.158 20.390 -16.033 27.857 hybrid contribution 0.561 0.739 -0.546 1.077 sum -9.597 21.129 -16.579 28.520 Atomic orbital electron populations 1.21846 0.93750 1.02537 1.02544 1.22353 0.96939 0.88762 1.00684 1.63729 1.03591 1.11801 1.46985 1.23096 0.97522 0.94906 0.92912 1.22740 0.92334 0.97840 1.02273 1.20828 0.90592 0.94785 0.99107 0.89422 1.21870 0.95804 0.95741 0.93037 1.77290 0.99027 1.13510 1.23448 1.46312 1.12948 1.33905 1.23963 0.69697 1.22957 0.99685 0.93608 0.88353 1.19865 0.97067 1.07555 1.04058 1.19326 1.00056 0.79564 0.92812 1.45921 1.69305 1.10959 1.09633 1.19932 0.76403 0.85844 0.85836 1.90696 1.52905 1.81846 1.18839 1.23235 1.05794 0.95076 1.02092 1.85018 1.89768 1.09342 1.12379 1.24045 1.56993 0.98264 0.96952 0.90797 1.27801 0.93128 1.06074 0.95153 1.70921 1.44162 1.29575 1.10213 0.82733 0.77600 0.69880 0.74499 1.20538 1.18842 1.18814 1.22785 0.89102 0.98633 0.96497 0.91362 0.92222 0.91837 0.90673 0.95258 0.89249 0.92961 0.89752 0.90605 0.76916 0.92097 0.90655 0.75296 0.87203 0.87431 0.92800 0.90930 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.58 71.98 0.69 -1.46 16 2 C 0.04 0.72 5.54 86.30 0.48 1.19 16 3 N -0.54 -10.22 5.31 -885.55 -4.71 -14.93 16 4 C 0.04 0.71 5.31 86.77 0.46 1.17 16 5 C -0.11 -1.92 6.51 31.98 0.21 -1.71 16 6 C -0.03 -0.60 3.36 -10.36 -0.03 -0.63 16 7 H 0.09 1.80 7.25 -2.39 -0.02 1.78 16 8 C 0.10 1.94 5.75 43.10 0.25 2.18 16 9 N -0.31 -5.81 12.34 -47.39 -0.58 -6.39 16 10 N -0.46 -5.45 7.36 -57.59 -0.42 -5.87 16 11 H 0.46 2.36 8.96 -213.32 -1.91 0.45 16 12 C 0.10 1.18 11.90 83.54 0.99 2.18 16 13 C -0.27 -4.64 5.47 -20.14 -0.11 -4.75 16 14 C 0.21 4.39 5.67 85.63 0.49 4.88 16 15 N -0.70 -17.13 5.55 -466.80 -2.59 -19.72 16 16 C 0.53 18.98 7.85 87.66 0.69 19.66 16 17 O -0.56 -25.14 15.86 -3.04 -0.05 -25.18 16 18 C -0.11 -4.32 6.16 71.24 0.44 -3.88 16 19 S -0.19 -10.48 19.60 -56.49 -1.11 -11.59 16 20 C -0.61 -35.39 9.50 67.95 0.65 -34.74 16 21 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 22 C -0.02 -1.06 5.49 84.86 0.47 -0.60 16 23 N -0.91 -57.97 13.67 21.65 0.30 -57.67 16 24 Si 1.14 49.14 29.92 68.60 2.05 51.20 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 28 C 0.06 1.15 6.45 86.64 0.56 1.71 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.82 6.47 -2.39 -0.02 0.81 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.03 0.56 7.96 -2.38 -0.02 0.54 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.05 0.85 7.02 -2.39 -0.02 0.83 16 36 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 1.41 7.84 -2.39 -0.02 1.39 16 38 H 0.21 0.89 8.06 -2.91 -0.02 0.86 16 39 H 0.06 1.47 7.68 -2.39 -0.02 1.45 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.41 8.06 8.46 -92.71 -0.78 7.28 16 42 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 43 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 44 H 0.26 17.20 7.12 -92.70 -0.66 16.54 16 45 H 0.07 1.57 7.71 -2.39 -0.02 1.55 16 46 H 0.06 1.11 7.50 -2.39 -0.02 1.10 16 Total: -1.00 -79.92 390.46 -2.47 -82.39 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -1.58 Total: 22.57 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 6.22 Total: -14.79 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -8.01 Total: -104.59 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.05 Total: 51.20 kcal Atomic # 16 Polarization: -10.48 SS G_CDS: -1.11 Total: -11.59 kcal Total: -79.92 -2.47 -82.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130347851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.576 kcal (2) G-P(sol) polarization free energy of solvation -79.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds