Wall clock time and date at job start Tue Mar 31 2020 21:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81405 * 102.99902 * 2 1 4 4 H 1.09002 * 109.46972 * 54.99629 * 3 2 1 5 5 C 1.53007 * 109.46686 * 294.99834 * 3 2 1 6 6 C 1.50701 * 109.46993 * 175.00045 * 3 2 1 7 7 O 1.21275 * 120.00155 * 25.00093 * 6 3 2 8 8 N 1.34773 * 119.99468 * 204.99739 * 6 3 2 9 9 C 1.46502 * 119.99687 * 179.97438 * 8 6 3 10 10 C 1.50702 * 109.47122 * 180.02562 * 9 8 6 11 11 C 1.35315 * 126.04034 * 259.97845 * 10 9 8 12 12 N 1.34947 * 107.74580 * 180.02562 * 11 10 9 13 13 H 0.96998 * 126.03962 * 180.02562 * 12 11 10 14 14 N 1.40084 * 107.92515 * 359.74900 * 12 11 10 15 15 C 1.30834 * 108.20620 * 0.41869 * 14 12 11 16 16 C 1.50696 * 125.90213 * 179.85185 * 15 14 12 17 17 H 1.09000 * 110.78568 * 181.48186 * 16 15 14 18 18 C 1.55405 * 110.85075 * 304.77871 * 16 15 14 19 19 C 1.54914 * 101.66697 * 153.69831 * 18 16 15 20 20 N 1.47426 * 104.82992 * 323.07703 * 19 18 16 21 21 C 1.36936 * 125.64583 * 204.09666 * 20 19 18 22 22 H 1.07997 * 119.99931 * 180.02562 * 21 20 19 23 23 C 1.38819 * 120.00094 * 0.03301 * 21 20 19 24 24 N 1.31618 * 119.99956 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99883 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47048 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46969 * 120.00174 * 25 23 21 28 28 H 1.48497 * 109.47276 * 240.00208 * 25 23 21 29 29 C 1.47018 * 108.70517 * 24.12623 * 20 19 18 30 30 H 1.08993 * 109.46976 * 60.00351 * 1 2 3 31 31 H 1.09003 * 109.46600 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47480 * 300.00051 * 1 2 3 33 33 H 1.09000 * 109.47331 * 60.00290 * 5 3 2 34 34 H 1.08999 * 109.46376 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47084 * 299.99727 * 5 3 2 36 36 H 0.97006 * 120.00333 * 0.02562 * 8 6 3 37 37 H 1.08999 * 109.47190 * 60.00260 * 9 8 6 38 38 H 1.08997 * 109.47001 * 299.99673 * 9 8 6 39 39 H 1.07994 * 126.12904 * 359.97438 * 11 10 9 40 40 H 1.09000 * 110.89538 * 35.62635 * 18 16 15 41 41 H 1.09001 * 111.03900 * 271.83121 * 18 16 15 42 42 H 1.08999 * 110.37121 * 204.23438 * 19 18 16 43 43 H 1.09001 * 110.45739 * 81.96050 * 19 18 16 44 44 H 0.96998 * 120.00119 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.88241 * 118.36067 * 29 20 19 46 46 H 1.09000 * 109.88049 * 239.37196 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4015 -1.3075 6 6 3.7142 1.9386 0.1238 7 8 4.4584 1.0532 -0.2409 8 7 4.2215 3.0756 0.6398 9 6 5.6721 3.2417 0.7607 10 6 5.9748 4.5895 1.3632 11 6 6.3538 5.6976 0.6853 12 7 6.5270 6.6899 1.5833 13 1 6.7983 7.5995 1.3834 14 7 6.2396 6.1762 2.8544 15 6 5.9143 4.9159 2.7220 16 6 5.5338 3.9793 3.8395 17 1 5.3349 2.9790 3.4551 18 6 6.6416 3.9388 4.9286 19 6 5.8287 3.5472 6.1879 20 7 4.5416 4.2507 6.0401 21 6 3.6988 4.5959 7.0626 22 1 2.7742 5.1118 6.8495 23 6 4.0327 4.2827 8.3731 24 7 5.1598 3.6545 8.6329 25 14 2.8825 4.7529 9.7679 26 1 1.6908 5.4451 9.2148 27 1 2.4526 3.5280 10.4892 28 1 3.5895 5.6588 10.7085 29 6 4.3126 4.5198 4.6130 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.6635 2.2778 -1.3970 34 1 1.9875 3.4637 -1.3072 35 1 2.2354 1.9149 -2.1492 36 1 3.6262 3.7837 0.9318 37 1 6.1291 3.1737 -0.2265 38 1 6.0752 2.4584 1.4026 39 1 6.4935 5.7739 -0.3828 40 1 7.1029 4.9188 5.0506 41 1 7.3910 3.1821 4.6965 42 1 6.3420 3.8808 7.0897 43 1 5.6704 2.4692 6.2192 44 1 5.3933 3.4360 9.5486 45 1 3.4080 4.0106 4.2803 46 1 4.2153 5.5930 4.4491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130348923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:08 Heat of formation + Delta-G solvation = 64.476983 kcal Electronic energy + Delta-G solvation = -27166.037922 eV Core-core repulsion = 23412.395601 eV Total energy + Delta-G solvation = -3753.642321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.38097 -39.69721 -37.26905 -35.08151 -33.61855 -33.06610 -31.27932 -30.59915 -29.10667 -29.02667 -27.48320 -26.25781 -24.63839 -24.31501 -22.04800 -20.66422 -20.28728 -20.05710 -18.71674 -18.24007 -17.22421 -16.85299 -16.79928 -15.53724 -15.51272 -14.98775 -14.61294 -14.53606 -14.39071 -14.20310 -14.10817 -13.83220 -13.61084 -13.25965 -12.98371 -12.74992 -12.57007 -12.38822 -12.19495 -11.99967 -11.97860 -11.80163 -11.52676 -11.04508 -10.81349 -10.76610 -10.53289 -10.10311 -10.08092 -10.03073 -10.01395 -9.74839 -9.46357 -9.15263 -9.14306 -8.65650 -8.59322 -7.82994 -6.76491 -5.59723 -3.00928 1.24813 1.81371 2.29500 2.54319 2.59432 2.84969 3.32709 3.42952 3.47907 3.50673 4.45941 4.52005 4.53537 4.64346 4.68130 4.75353 4.88117 4.92589 5.07281 5.15548 5.24467 5.28361 5.39764 5.48519 5.53605 5.56766 5.67871 5.69724 5.76819 5.94313 5.95402 6.05397 6.30681 6.43944 6.52857 6.63557 6.72554 6.76069 6.97596 7.23511 7.36735 7.59515 7.68621 7.76324 7.92101 8.07379 8.42425 9.27677 9.88639 10.53965 11.44288 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.003376 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.579024 B = 8292.471207 C =10512.023841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.188 6.188 3 C -0.096 4.096 4 H 0.109 0.891 5 C -0.140 4.140 6 C 0.535 3.465 7 O -0.522 6.522 8 N -0.717 5.717 9 C 0.204 3.796 10 C -0.264 4.264 11 C 0.076 3.924 12 N -0.480 5.480 13 H 0.439 0.561 14 N -0.277 5.277 15 C 0.122 3.878 16 C -0.030 4.030 17 H 0.088 0.912 18 C -0.132 4.132 19 C 0.152 3.848 20 N -0.602 5.602 21 C -0.219 4.219 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.913 3.087 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.152 3.848 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.175 0.825 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.013 0.987 44 H 0.251 0.749 45 H 0.018 0.982 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 1.188 -22.892 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.038 5.962 3 C -0.228 4.228 4 H 0.127 0.873 5 C -0.199 4.199 6 C 0.318 3.682 7 O -0.398 6.398 8 N -0.369 5.369 9 C 0.080 3.920 10 C -0.276 4.276 11 C -0.074 4.074 12 N -0.186 5.186 13 H 0.282 0.718 14 N -0.098 5.098 15 C -0.047 4.047 16 C -0.051 4.051 17 H 0.106 0.894 18 C -0.171 4.171 19 C 0.027 3.973 20 N -0.328 5.328 21 C -0.347 4.347 22 H 0.094 0.906 23 C -0.207 4.207 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.025 3.975 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.192 0.808 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.031 0.969 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.025 0.628 -22.109 22.211 hybrid contribution -1.738 1.557 0.127 2.337 sum -3.763 2.186 -21.982 22.409 Atomic orbital electron populations 1.23552 0.95667 1.06683 1.04950 1.87451 1.04931 1.06010 1.97839 1.23338 0.97490 0.98504 1.03430 0.87323 1.21977 1.01897 1.01005 0.95032 1.19581 0.88660 0.82281 0.77638 1.90743 1.60187 1.40645 1.48236 1.46097 1.08470 1.18495 1.63841 1.19396 0.79680 0.92802 1.00096 1.19930 1.17821 0.96713 0.93158 1.22358 0.99988 0.88606 0.96404 1.46386 1.55002 1.12144 1.05083 0.71781 1.77552 1.22144 1.11091 0.99043 1.22265 0.96311 0.92051 0.94039 1.20798 0.98134 0.95192 0.90961 0.89376 1.23131 0.96399 1.01195 0.96390 1.21943 0.85613 0.94197 0.95520 1.44469 1.21228 1.67405 0.99734 1.19103 0.99735 1.30720 0.85191 0.90556 1.24771 0.97831 1.00908 0.97188 1.69806 1.23065 1.45966 1.18194 0.86016 0.79661 0.77594 0.82338 1.20609 1.21776 1.21795 1.21222 0.93238 0.97231 0.85822 0.90490 0.87812 0.90333 0.91353 0.91212 0.90630 0.76308 0.90959 0.90356 0.80833 0.91561 0.92292 0.87515 0.96870 0.93822 0.96368 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 10.45 101.05 1.06 0.02 16 2 S -0.19 -2.16 21.10 -107.50 -2.27 -4.43 16 3 C -0.10 -0.94 3.18 -27.88 -0.09 -1.03 16 4 H 0.11 0.94 8.14 -51.92 -0.42 0.51 16 5 C -0.14 -1.01 9.08 37.16 0.34 -0.67 16 6 C 0.53 6.60 6.95 -10.99 -0.08 6.52 16 7 O -0.52 -8.42 16.14 5.56 0.09 -8.33 16 8 N -0.72 -7.65 5.55 -61.47 -0.34 -7.99 16 9 C 0.20 2.29 5.67 -5.19 -0.03 2.26 16 10 C -0.26 -3.10 5.47 -105.05 -0.57 -3.67 16 11 C 0.08 0.69 11.90 -17.22 -0.20 0.49 16 12 N -0.48 -5.10 7.36 30.44 0.22 -4.87 16 13 H 0.44 3.15 8.96 -182.61 -1.64 1.51 16 14 N -0.28 -4.37 12.34 33.67 0.42 -3.95 16 15 C 0.12 1.87 5.77 -82.41 -0.48 1.39 16 16 C -0.03 -0.54 3.37 -89.80 -0.30 -0.84 16 17 H 0.09 1.52 7.27 -51.93 -0.38 1.14 16 18 C -0.13 -2.64 6.53 -24.44 -0.16 -2.80 16 19 C 0.15 3.79 5.89 -2.53 -0.01 3.78 16 20 N -0.60 -15.79 3.39 -170.07 -0.58 -16.36 16 21 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 22 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 23 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 24 N -0.92 -27.25 10.09 55.49 0.56 -26.70 16 25 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 C 0.15 3.25 6.82 -3.07 -0.02 3.23 16 30 H 0.08 0.45 7.14 -51.93 -0.37 0.08 16 31 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.40 6.92 -51.93 -0.36 0.04 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 3.75 8.46 -40.82 -0.35 3.41 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.02 7.70 -51.93 -0.40 0.62 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.07 1.38 7.89 -51.93 -0.41 0.97 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.11 2.99 5.87 -51.93 -0.30 2.69 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.03 0.61 7.67 -51.93 -0.40 0.21 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -35.56 389.04 -10.24 -45.80 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.38 Total: 1.78 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.80 Total: 1.87 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.28 Total: -59.87 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -2.27 Total: -4.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.56 -10.24 -45.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130348923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.272 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds