Wall clock time and date at job start Tue Mar 31 2020 21:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81405 * 102.99902 * 2 1 4 4 H 1.09002 * 109.46972 * 54.99629 * 3 2 1 5 5 C 1.53007 * 109.46686 * 294.99834 * 3 2 1 6 6 C 1.50701 * 109.46993 * 175.00045 * 3 2 1 7 7 O 1.21275 * 120.00155 * 25.00093 * 6 3 2 8 8 N 1.34773 * 119.99468 * 204.99739 * 6 3 2 9 9 C 1.46502 * 119.99687 * 179.97438 * 8 6 3 10 10 C 1.50702 * 109.47122 * 180.02562 * 9 8 6 11 11 C 1.35315 * 126.04034 * 259.97845 * 10 9 8 12 12 N 1.34947 * 107.74580 * 180.02562 * 11 10 9 13 13 H 0.96998 * 126.03962 * 180.02562 * 12 11 10 14 14 N 1.40084 * 107.92515 * 359.74900 * 12 11 10 15 15 C 1.30834 * 108.20620 * 0.41869 * 14 12 11 16 16 C 1.50696 * 125.90213 * 179.85185 * 15 14 12 17 17 H 1.09000 * 110.78568 * 181.48186 * 16 15 14 18 18 C 1.55405 * 110.85075 * 304.77871 * 16 15 14 19 19 C 1.54914 * 101.66697 * 153.69831 * 18 16 15 20 20 N 1.47426 * 104.82992 * 323.07703 * 19 18 16 21 21 C 1.36936 * 125.64583 * 204.09666 * 20 19 18 22 22 H 1.07997 * 119.99931 * 180.02562 * 21 20 19 23 23 C 1.38819 * 120.00094 * 0.03301 * 21 20 19 24 24 N 1.31618 * 119.99956 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99883 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47048 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46969 * 120.00174 * 25 23 21 28 28 H 1.48497 * 109.47276 * 240.00208 * 25 23 21 29 29 C 1.47018 * 108.70517 * 24.12623 * 20 19 18 30 30 H 1.08993 * 109.46976 * 60.00351 * 1 2 3 31 31 H 1.09003 * 109.46600 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47480 * 300.00051 * 1 2 3 33 33 H 1.09000 * 109.47331 * 60.00290 * 5 3 2 34 34 H 1.08999 * 109.46376 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47084 * 299.99727 * 5 3 2 36 36 H 0.97006 * 120.00333 * 0.02562 * 8 6 3 37 37 H 1.08999 * 109.47190 * 60.00260 * 9 8 6 38 38 H 1.08997 * 109.47001 * 299.99673 * 9 8 6 39 39 H 1.07994 * 126.12904 * 359.97438 * 11 10 9 40 40 H 1.09000 * 110.89538 * 35.62635 * 18 16 15 41 41 H 1.09001 * 111.03900 * 271.83121 * 18 16 15 42 42 H 1.08999 * 110.37121 * 204.23438 * 19 18 16 43 43 H 1.09001 * 110.45739 * 81.96050 * 19 18 16 44 44 H 0.96998 * 120.00119 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.88241 * 118.36067 * 29 20 19 46 46 H 1.09000 * 109.88049 * 239.37196 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4015 -1.3075 6 6 3.7142 1.9386 0.1238 7 8 4.4584 1.0532 -0.2409 8 7 4.2215 3.0756 0.6398 9 6 5.6721 3.2417 0.7607 10 6 5.9748 4.5895 1.3632 11 6 6.3538 5.6976 0.6853 12 7 6.5270 6.6899 1.5833 13 1 6.7983 7.5995 1.3834 14 7 6.2396 6.1762 2.8544 15 6 5.9143 4.9159 2.7220 16 6 5.5338 3.9793 3.8395 17 1 5.3349 2.9790 3.4551 18 6 6.6416 3.9388 4.9286 19 6 5.8287 3.5472 6.1879 20 7 4.5416 4.2507 6.0401 21 6 3.6988 4.5959 7.0626 22 1 2.7742 5.1118 6.8495 23 6 4.0327 4.2827 8.3731 24 7 5.1598 3.6545 8.6329 25 14 2.8825 4.7529 9.7679 26 1 1.6908 5.4451 9.2148 27 1 2.4526 3.5280 10.4892 28 1 3.5895 5.6588 10.7085 29 6 4.3126 4.5198 4.6130 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.6635 2.2778 -1.3970 34 1 1.9875 3.4637 -1.3072 35 1 2.2354 1.9149 -2.1492 36 1 3.6262 3.7837 0.9318 37 1 6.1291 3.1737 -0.2265 38 1 6.0752 2.4584 1.4026 39 1 6.4935 5.7739 -0.3828 40 1 7.1029 4.9188 5.0506 41 1 7.3910 3.1821 4.6965 42 1 6.3420 3.8808 7.0897 43 1 5.6704 2.4692 6.2192 44 1 5.3933 3.4360 9.5486 45 1 3.4080 4.0106 4.2803 46 1 4.2153 5.5930 4.4491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130348923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:07 Heat of formation + Delta-G solvation = 39.266344 kcal Electronic energy + Delta-G solvation = -27167.131137 eV Core-core repulsion = 23412.395601 eV Total energy + Delta-G solvation = -3754.735536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.35963 -40.64938 -39.02100 -36.04656 -34.90717 -34.32972 -32.74462 -31.54017 -30.91204 -29.62565 -29.15661 -27.08761 -26.61958 -25.04842 -23.41853 -22.07118 -21.56762 -21.25565 -20.04993 -19.12120 -18.84652 -18.08742 -17.71792 -16.89540 -16.48620 -16.38019 -16.22497 -15.73741 -15.44350 -15.21316 -15.01789 -14.87604 -14.48332 -14.33427 -14.11397 -13.89262 -13.71416 -13.57852 -13.40624 -13.31518 -13.09626 -12.93950 -12.87604 -12.73540 -12.65078 -12.32292 -11.97467 -11.90279 -11.73394 -11.64368 -11.19790 -11.03542 -10.78990 -10.74605 -10.29685 -10.07252 -9.56350 -8.87308 -8.69531 -7.76062 -5.20606 0.48864 0.97297 1.46294 1.48143 1.51258 1.56818 1.58334 1.70533 2.02694 2.45041 2.50928 3.33442 3.54537 3.68784 3.76442 3.83055 3.87291 4.02442 4.03925 4.14697 4.18555 4.34832 4.36304 4.38615 4.55162 4.64682 4.66318 4.68834 4.72871 4.79337 4.88766 4.93632 5.03384 5.04907 5.13870 5.15137 5.33446 5.42886 5.47336 5.56597 5.64875 5.80964 6.31274 6.50649 6.51558 6.77397 7.11416 7.18750 7.78730 8.43477 9.26387 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.003376 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.579024 B = 8292.471207 C =10512.023841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.272 6.272 3 C -0.082 4.082 4 H 0.122 0.878 5 C -0.134 4.134 6 C 0.531 3.469 7 O -0.566 6.566 8 N -0.706 5.706 9 C 0.209 3.791 10 C -0.272 4.272 11 C 0.110 3.890 12 N -0.465 5.465 13 H 0.455 0.545 14 N -0.324 5.324 15 C 0.105 3.895 16 C -0.012 4.012 17 H 0.094 0.906 18 C -0.117 4.117 19 C 0.156 3.844 20 N -0.624 5.624 21 C -0.237 4.237 22 H 0.080 0.920 23 C -0.068 4.068 24 N -0.950 5.950 25 Si 0.981 3.019 26 H -0.266 1.266 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.152 3.848 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.411 0.589 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.227 0.773 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.072 0.928 43 H -0.009 1.009 44 H 0.247 0.753 45 H 0.025 0.975 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 2.914 -25.444 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.047 6.047 3 C -0.213 4.213 4 H 0.140 0.860 5 C -0.193 4.193 6 C 0.316 3.684 7 O -0.445 6.445 8 N -0.358 5.358 9 C 0.085 3.915 10 C -0.284 4.284 11 C -0.040 4.040 12 N -0.173 5.173 13 H 0.301 0.699 14 N -0.147 5.147 15 C -0.062 4.062 16 C -0.033 4.033 17 H 0.112 0.888 18 C -0.157 4.157 19 C 0.031 3.969 20 N -0.351 5.351 21 C -0.366 4.366 22 H 0.098 0.902 23 C -0.260 4.260 24 N -0.599 5.599 25 Si 0.809 3.191 26 H -0.190 1.190 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.026 3.974 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.247 0.753 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.243 0.757 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.009 0.991 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.193 2.403 -24.679 25.000 hybrid contribution -1.372 1.080 0.864 1.948 sum -4.565 3.483 -23.815 24.497 Atomic orbital electron populations 1.23562 0.91389 1.07629 1.06202 1.87717 1.09783 1.09082 1.98082 1.23320 0.95748 0.96792 1.05462 0.86021 1.21970 1.02829 1.01577 0.92888 1.20023 0.89610 0.81906 0.76883 1.90722 1.61414 1.42098 1.50259 1.46046 1.08579 1.18258 1.62912 1.19318 0.79859 0.91919 1.00433 1.19888 1.19132 0.97768 0.91654 1.23037 0.96272 0.86620 0.98091 1.46355 1.53837 1.13265 1.03818 0.69851 1.77446 1.23629 1.11517 1.02144 1.21838 0.97911 0.91888 0.94557 1.20503 0.95398 0.96289 0.91063 0.88786 1.22907 0.96824 1.01081 0.94859 1.21699 0.85957 0.92666 0.96626 1.44777 1.21419 1.67378 1.01482 1.19486 1.00272 1.30629 0.86251 0.90169 1.25647 0.99497 1.01248 0.99605 1.70066 1.24663 1.46980 1.18238 0.84969 0.78109 0.77080 0.78928 1.19007 1.21813 1.21839 1.21315 0.95225 0.96931 0.83887 0.88508 0.87062 0.89678 0.89529 0.89330 0.91751 0.75317 0.89233 0.92659 0.75690 0.92499 0.90086 0.91000 0.99141 0.94348 0.95675 0.96118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 10.45 113.37 1.19 -0.37 16 2 S -0.27 -6.20 21.10 -56.49 -1.19 -7.39 16 3 C -0.08 -1.49 3.18 29.85 0.09 -1.40 16 4 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 5 C -0.13 -1.60 9.08 71.98 0.65 -0.94 16 6 C 0.53 12.60 6.95 87.66 0.61 13.21 16 7 O -0.57 -18.33 16.14 -3.02 -0.05 -18.38 16 8 N -0.71 -13.77 5.55 -466.79 -2.59 -16.36 16 9 C 0.21 4.26 5.67 85.63 0.49 4.75 16 10 C -0.27 -5.63 5.47 -20.14 -0.11 -5.74 16 11 C 0.11 1.50 11.90 83.54 0.99 2.50 16 12 N -0.46 -8.27 7.36 -57.59 -0.42 -8.69 16 13 H 0.45 4.86 8.96 -213.33 -1.91 2.95 16 14 N -0.32 -9.71 12.34 -47.39 -0.58 -10.29 16 15 C 0.11 3.08 5.77 43.10 0.25 3.33 16 16 C -0.01 -0.42 3.37 -10.26 -0.03 -0.46 16 17 H 0.09 3.22 7.27 -2.39 -0.02 3.21 16 18 C -0.12 -4.78 6.53 32.08 0.21 -4.57 16 19 C 0.16 8.11 5.89 86.86 0.51 8.62 16 20 N -0.62 -33.66 3.39 -691.98 -2.35 -36.01 16 21 C -0.24 -13.75 10.27 84.04 0.86 -12.89 16 22 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 23 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 24 N -0.95 -58.22 10.09 21.65 0.22 -58.00 16 25 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 29 C 0.15 6.57 6.82 86.73 0.59 7.17 16 30 H 0.10 0.87 7.14 -2.39 -0.02 0.86 16 31 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 0.73 6.92 -2.39 -0.02 0.71 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.41 6.66 8.46 -92.70 -0.78 5.87 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.41 7.70 -2.39 -0.02 1.39 16 39 H 0.23 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.06 2.42 7.89 -2.39 -0.02 2.40 16 41 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.07 4.26 5.87 -2.39 -0.01 4.24 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.02 0.93 7.67 -2.39 -0.02 0.91 16 Total: -1.00 -82.03 389.04 0.14 -81.89 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -1.69 Total: 14.86 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.77 Total: 9.72 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -5.73 Total: -129.36 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 16 Polarization: -6.20 SS G_CDS: -1.19 Total: -7.39 kcal Total: -82.03 0.14 -81.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130348923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.160 kcal (2) G-P(sol) polarization free energy of solvation -82.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds