Wall clock time and date at job start Tue Mar 31 2020 21:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81403 * 102.99780 * 2 1 4 4 H 1.08992 * 109.47303 * 305.00132 * 3 2 1 5 5 C 1.52998 * 109.46935 * 65.00269 * 3 2 1 6 6 C 1.50698 * 109.47029 * 184.99662 * 3 2 1 7 7 O 1.21286 * 120.00147 * 340.00545 * 6 3 2 8 8 N 1.34773 * 120.00263 * 160.00186 * 6 3 2 9 9 C 1.46494 * 120.00293 * 180.28253 * 8 6 3 10 10 C 1.50704 * 109.47331 * 179.72317 * 9 8 6 11 11 C 1.35308 * 126.04064 * 259.68785 * 10 9 8 12 12 N 1.34950 * 107.74669 * 179.87029 * 11 10 9 13 13 H 0.96998 * 126.03814 * 180.14537 * 12 11 10 14 14 N 1.40087 * 107.92278 * 0.39214 * 12 11 10 15 15 C 1.30832 * 108.20552 * 359.75277 * 14 12 11 16 16 C 1.50701 * 125.89500 * 179.97438 * 15 14 12 17 17 H 1.09002 * 110.63941 * 181.71464 * 16 15 14 18 18 C 1.55156 * 110.72077 * 305.04882 * 16 15 14 19 19 C 1.54915 * 101.57656 * 153.86495 * 18 16 15 20 20 N 1.47415 * 104.83643 * 322.99478 * 19 18 16 21 21 C 1.36942 * 125.64880 * 204.09642 * 20 19 18 22 22 H 1.08004 * 119.99627 * 169.98208 * 21 20 19 23 23 C 1.38804 * 119.99997 * 349.97733 * 21 20 19 24 24 N 1.31624 * 119.99899 * 350.42646 * 23 21 20 25 25 Si 1.86798 * 119.99969 * 170.42509 * 23 21 20 26 26 H 1.48498 * 109.47478 * 94.14492 * 25 23 21 27 27 H 1.48506 * 109.46878 * 214.14491 * 25 23 21 28 28 H 1.48504 * 109.47239 * 334.13908 * 25 23 21 29 29 C 1.47025 * 108.70237 * 24.12636 * 20 19 18 30 30 H 1.08994 * 109.46846 * 299.99993 * 1 2 3 31 31 H 1.09004 * 109.47194 * 59.99574 * 1 2 3 32 32 H 1.08997 * 109.46820 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47286 * 299.99806 * 5 3 2 34 34 H 1.09006 * 109.47399 * 59.99705 * 5 3 2 35 35 H 1.09001 * 109.47318 * 179.97438 * 5 3 2 36 36 H 0.97003 * 119.99703 * 0.02562 * 8 6 3 37 37 H 1.09004 * 109.47121 * 299.72012 * 9 8 6 38 38 H 1.09000 * 109.47599 * 59.72456 * 9 8 6 39 39 H 1.08004 * 126.13081 * 0.02562 * 11 10 9 40 40 H 1.08993 * 111.00677 * 271.93885 * 18 16 15 41 41 H 1.08996 * 111.00250 * 35.80047 * 18 16 15 42 42 H 1.09000 * 110.36663 * 204.14939 * 19 18 16 43 43 H 1.09002 * 110.45751 * 81.87895 * 19 18 16 44 44 H 0.97001 * 119.99881 * 179.97438 * 24 23 21 45 45 H 1.09008 * 109.88257 * 239.52333 * 29 20 19 46 46 H 1.09002 * 110.00832 * 118.43826 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7295 2.2542 -0.8417 5 6 1.7428 2.4015 1.3074 6 6 3.7142 1.9386 -0.1237 7 8 4.4552 1.0200 0.1556 8 7 4.2253 3.1124 -0.5449 9 6 5.6755 3.2768 -0.6711 10 6 5.9826 4.6678 -1.1629 11 6 6.2873 5.0132 -2.4351 12 7 6.4904 6.3471 -2.4618 13 1 6.7221 6.8736 -3.2428 14 7 6.3131 6.8362 -1.1611 15 6 6.0088 5.8290 -0.3836 16 6 5.7345 5.9066 1.0963 17 1 5.5357 4.9149 1.5027 18 6 6.9177 6.5814 1.8392 19 6 6.2090 7.1649 3.0871 20 7 4.8950 7.6192 2.5970 21 6 4.1182 8.5870 3.1761 22 1 3.2495 8.9643 2.6571 23 6 4.4474 9.0829 4.4300 24 7 5.3869 8.4986 5.1430 25 14 3.5571 10.5797 5.1056 26 1 2.4179 10.1388 5.9500 27 1 4.4969 11.3869 5.9245 28 1 3.0488 11.4035 3.9794 29 6 4.5563 6.8607 1.3839 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.6636 2.2778 1.3970 34 1 2.2354 1.9149 2.1492 35 1 1.9884 3.4635 1.3076 36 1 3.6327 3.8473 -0.7680 37 1 6.1445 3.1232 0.3008 38 1 6.0636 2.5465 -1.3812 39 1 6.3535 4.3421 -3.2788 40 1 7.6699 5.8463 2.1251 41 1 7.3581 7.3737 1.2340 42 1 6.7761 8.0055 3.4871 43 1 6.0844 6.3955 3.8490 44 1 5.6172 8.8454 6.0191 45 1 4.4193 7.5439 0.5456 46 1 3.6446 6.2857 1.5460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130348924.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:11 Heat of formation + Delta-G solvation = 61.959310 kcal Electronic energy + Delta-G solvation = -27243.968498 eV Core-core repulsion = 23490.217003 eV Total energy + Delta-G solvation = -3753.751495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39379 -39.68524 -37.31262 -35.07736 -33.56651 -33.06105 -31.29881 -30.59004 -29.11614 -29.05362 -27.54965 -26.21197 -24.63252 -24.26998 -22.06099 -20.64455 -20.30750 -20.12091 -18.73988 -18.22503 -17.23519 -16.83733 -16.76804 -15.63979 -15.34815 -14.94475 -14.64419 -14.56703 -14.40250 -14.23552 -14.12158 -13.83006 -13.62561 -13.15981 -12.95566 -12.79734 -12.57987 -12.31897 -12.14019 -11.97447 -11.93887 -11.87387 -11.59125 -10.96913 -10.87534 -10.75622 -10.56555 -10.12168 -10.08321 -10.03398 -10.00326 -9.79887 -9.60852 -9.16861 -9.14768 -8.66335 -8.53847 -7.86454 -6.74663 -5.70658 -3.02620 1.24707 1.80472 2.27921 2.52577 2.58760 2.83752 3.34252 3.41519 3.47354 3.49535 4.49134 4.51511 4.59394 4.63434 4.67545 4.76789 4.85576 4.89503 5.08173 5.22985 5.29591 5.38306 5.43293 5.50464 5.51861 5.54435 5.68251 5.73962 5.91110 5.91836 5.93402 6.03823 6.31322 6.40048 6.50537 6.58638 6.70638 6.72406 6.95333 7.22360 7.37275 7.55865 7.63369 7.74827 7.82660 8.08192 8.30531 9.23588 9.85617 10.53655 11.42496 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.003265 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.304183 B = 8573.754585 C =10669.492517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.191 6.191 3 C -0.092 4.092 4 H 0.106 0.894 5 C -0.145 4.145 6 C 0.534 3.466 7 O -0.522 6.522 8 N -0.717 5.717 9 C 0.204 3.796 10 C -0.264 4.264 11 C 0.077 3.923 12 N -0.480 5.480 13 H 0.439 0.561 14 N -0.278 5.278 15 C 0.121 3.879 16 C -0.028 4.028 17 H 0.089 0.911 18 C -0.134 4.134 19 C 0.174 3.826 20 N -0.601 5.601 21 C -0.227 4.227 22 H 0.074 0.926 23 C -0.007 4.007 24 N -0.917 5.917 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.152 3.848 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.403 0.597 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.175 0.825 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.252 0.748 45 H 0.027 0.973 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 -13.348 -17.048 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.034 5.966 3 C -0.224 4.224 4 H 0.124 0.876 5 C -0.204 4.204 6 C 0.318 3.682 7 O -0.398 6.398 8 N -0.369 5.369 9 C 0.080 3.920 10 C -0.276 4.276 11 C -0.073 4.073 12 N -0.186 5.186 13 H 0.282 0.718 14 N -0.099 5.099 15 C -0.047 4.047 16 C -0.049 4.049 17 H 0.107 0.893 18 C -0.173 4.173 19 C 0.049 3.951 20 N -0.327 5.327 21 C -0.355 4.355 22 H 0.092 0.908 23 C -0.204 4.204 24 N -0.564 5.564 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.025 3.975 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.237 0.763 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.192 0.808 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.814 -13.509 -16.736 21.690 hybrid contribution -1.652 1.634 -0.276 2.340 sum -4.466 -11.875 -17.012 21.222 Atomic orbital electron populations 1.23549 0.95749 1.06561 1.04995 1.87376 1.04811 1.06514 1.97881 1.23347 0.97348 0.98064 1.03618 0.87619 1.22021 1.01862 1.01783 0.94764 1.19607 0.88689 0.82781 0.77140 1.90747 1.60385 1.40152 1.48501 1.46073 1.08487 1.14406 1.67953 1.19396 0.79740 0.91339 1.01504 1.19930 1.18339 0.96141 0.93180 1.22369 0.99875 0.86353 0.98705 1.46381 1.56292 1.06100 1.09842 0.71775 1.77536 1.23351 1.21641 0.87393 1.22272 0.96243 0.89696 0.96533 1.20742 0.98433 1.00366 0.85355 0.89308 1.23077 0.95826 0.99169 0.99261 1.21406 0.85506 0.97707 0.90512 1.44430 1.18597 1.42487 1.27191 1.18989 1.06942 1.11193 0.98390 0.90783 1.24798 0.99467 0.99941 0.96159 1.69959 1.33831 1.40806 1.11851 0.86155 0.78610 0.82645 0.78652 1.21657 1.21637 1.20672 1.21231 0.93295 0.92035 0.90941 0.90231 0.90628 0.87899 0.91338 0.90374 0.90499 0.76307 0.90374 0.90935 0.80802 0.92128 0.91540 0.91267 0.95433 0.93743 0.95484 0.96293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 10.45 101.05 1.06 0.09 16 2 S -0.19 -2.09 21.04 -107.50 -2.26 -4.35 16 3 C -0.09 -0.91 3.18 -27.88 -0.09 -1.00 16 4 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.15 -1.39 9.08 37.16 0.34 -1.05 16 6 C 0.53 6.61 7.00 -10.99 -0.08 6.53 16 7 O -0.52 -8.46 16.04 5.55 0.09 -8.37 16 8 N -0.72 -7.63 5.55 -61.47 -0.34 -7.98 16 9 C 0.20 2.28 5.67 -5.20 -0.03 2.25 16 10 C -0.26 -3.06 5.47 -105.05 -0.57 -3.63 16 11 C 0.08 0.69 11.90 -17.23 -0.20 0.49 16 12 N -0.48 -5.02 7.36 30.44 0.22 -4.79 16 13 H 0.44 3.08 8.96 -182.61 -1.64 1.44 16 14 N -0.28 -4.29 12.33 33.67 0.42 -3.87 16 15 C 0.12 1.82 5.76 -82.41 -0.47 1.34 16 16 C -0.03 -0.49 3.36 -89.94 -0.30 -0.79 16 17 H 0.09 1.49 7.26 -51.93 -0.38 1.11 16 18 C -0.13 -2.60 6.52 -24.58 -0.16 -2.76 16 19 C 0.17 4.25 5.42 -2.53 -0.01 4.23 16 20 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 21 C -0.23 -6.38 10.24 -15.06 -0.15 -6.53 16 22 H 0.07 2.02 7.85 -52.48 -0.41 1.61 16 23 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 24 N -0.92 -27.06 10.68 55.49 0.59 -26.47 16 25 Si 0.91 22.17 29.56 -169.99 -5.03 17.15 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 C 0.15 3.18 6.83 -3.07 -0.02 3.16 16 30 H 0.08 0.50 7.14 -51.93 -0.37 0.13 16 31 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.54 6.92 -51.93 -0.36 0.18 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 3.74 8.46 -40.82 -0.35 3.39 16 37 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.34 7.88 -51.93 -0.41 0.93 16 42 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 43 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.03 0.59 7.68 -51.92 -0.40 0.19 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -35.27 389.91 -10.24 -45.51 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.43 Total: 1.35 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.80 Total: 2.03 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.31 Total: -59.19 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -2.26 Total: -4.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.27 -10.24 -45.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130348924.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.468 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds