Wall clock time and date at job start Tue Mar 31 2020 21:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81403 * 102.99780 * 2 1 4 4 H 1.08992 * 109.47303 * 305.00132 * 3 2 1 5 5 C 1.52998 * 109.46935 * 65.00269 * 3 2 1 6 6 C 1.50698 * 109.47029 * 184.99662 * 3 2 1 7 7 O 1.21286 * 120.00147 * 340.00545 * 6 3 2 8 8 N 1.34773 * 120.00263 * 160.00186 * 6 3 2 9 9 C 1.46494 * 120.00293 * 180.28253 * 8 6 3 10 10 C 1.50704 * 109.47331 * 179.72317 * 9 8 6 11 11 C 1.35308 * 126.04064 * 259.68785 * 10 9 8 12 12 N 1.34950 * 107.74669 * 179.87029 * 11 10 9 13 13 H 0.96998 * 126.03814 * 180.14537 * 12 11 10 14 14 N 1.40087 * 107.92278 * 0.39214 * 12 11 10 15 15 C 1.30832 * 108.20552 * 359.75277 * 14 12 11 16 16 C 1.50701 * 125.89500 * 179.97438 * 15 14 12 17 17 H 1.09002 * 110.63941 * 181.71464 * 16 15 14 18 18 C 1.55156 * 110.72077 * 305.04882 * 16 15 14 19 19 C 1.54915 * 101.57656 * 153.86495 * 18 16 15 20 20 N 1.47415 * 104.83643 * 322.99478 * 19 18 16 21 21 C 1.36942 * 125.64880 * 204.09642 * 20 19 18 22 22 H 1.08004 * 119.99627 * 169.98208 * 21 20 19 23 23 C 1.38804 * 119.99997 * 349.97733 * 21 20 19 24 24 N 1.31624 * 119.99899 * 350.42646 * 23 21 20 25 25 Si 1.86798 * 119.99969 * 170.42509 * 23 21 20 26 26 H 1.48498 * 109.47478 * 94.14492 * 25 23 21 27 27 H 1.48506 * 109.46878 * 214.14491 * 25 23 21 28 28 H 1.48504 * 109.47239 * 334.13908 * 25 23 21 29 29 C 1.47025 * 108.70237 * 24.12636 * 20 19 18 30 30 H 1.08994 * 109.46846 * 299.99993 * 1 2 3 31 31 H 1.09004 * 109.47194 * 59.99574 * 1 2 3 32 32 H 1.08997 * 109.46820 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47286 * 299.99806 * 5 3 2 34 34 H 1.09006 * 109.47399 * 59.99705 * 5 3 2 35 35 H 1.09001 * 109.47318 * 179.97438 * 5 3 2 36 36 H 0.97003 * 119.99703 * 0.02562 * 8 6 3 37 37 H 1.09004 * 109.47121 * 299.72012 * 9 8 6 38 38 H 1.09000 * 109.47599 * 59.72456 * 9 8 6 39 39 H 1.08004 * 126.13081 * 0.02562 * 11 10 9 40 40 H 1.08993 * 111.00677 * 271.93885 * 18 16 15 41 41 H 1.08996 * 111.00250 * 35.80047 * 18 16 15 42 42 H 1.09000 * 110.36663 * 204.14939 * 19 18 16 43 43 H 1.09002 * 110.45751 * 81.87895 * 19 18 16 44 44 H 0.97001 * 119.99881 * 179.97438 * 24 23 21 45 45 H 1.09008 * 109.88257 * 239.52333 * 29 20 19 46 46 H 1.09002 * 110.00832 * 118.43826 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7295 2.2542 -0.8417 5 6 1.7428 2.4015 1.3074 6 6 3.7142 1.9386 -0.1237 7 8 4.4552 1.0200 0.1556 8 7 4.2253 3.1124 -0.5449 9 6 5.6755 3.2768 -0.6711 10 6 5.9826 4.6678 -1.1629 11 6 6.2873 5.0132 -2.4351 12 7 6.4904 6.3471 -2.4618 13 1 6.7221 6.8736 -3.2428 14 7 6.3131 6.8362 -1.1611 15 6 6.0088 5.8290 -0.3836 16 6 5.7345 5.9066 1.0963 17 1 5.5357 4.9149 1.5027 18 6 6.9177 6.5814 1.8392 19 6 6.2090 7.1649 3.0871 20 7 4.8950 7.6192 2.5970 21 6 4.1182 8.5870 3.1761 22 1 3.2495 8.9643 2.6571 23 6 4.4474 9.0829 4.4300 24 7 5.3869 8.4986 5.1430 25 14 3.5571 10.5797 5.1056 26 1 2.4179 10.1388 5.9500 27 1 4.4969 11.3869 5.9245 28 1 3.0488 11.4035 3.9794 29 6 4.5563 6.8607 1.3839 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.6636 2.2778 1.3970 34 1 2.2354 1.9149 2.1492 35 1 1.9884 3.4635 1.3076 36 1 3.6327 3.8473 -0.7680 37 1 6.1445 3.1232 0.3008 38 1 6.0636 2.5465 -1.3812 39 1 6.3535 4.3421 -3.2788 40 1 7.6699 5.8463 2.1251 41 1 7.3581 7.3737 1.2340 42 1 6.7761 8.0055 3.4871 43 1 6.0844 6.3955 3.8490 44 1 5.6172 8.8454 6.0191 45 1 4.4193 7.5439 0.5456 46 1 3.6446 6.2857 1.5460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130348924.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:10 Heat of formation + Delta-G solvation = 37.093288 kcal Electronic energy + Delta-G solvation = -27245.046770 eV Core-core repulsion = 23490.217003 eV Total energy + Delta-G solvation = -3754.829767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35906 -40.64596 -39.03447 -36.04324 -34.89392 -34.35631 -32.75867 -31.52763 -30.89578 -29.60612 -29.19400 -27.07981 -26.59604 -25.08098 -23.40962 -22.11221 -21.55466 -21.26486 -20.04945 -19.09406 -18.79613 -18.10093 -17.70164 -16.81364 -16.56503 -16.33502 -16.19828 -15.79308 -15.45485 -15.27874 -14.98299 -14.89339 -14.45760 -14.31980 -14.05724 -13.86310 -13.73823 -13.63139 -13.49051 -13.36195 -13.09119 -12.89393 -12.82709 -12.71600 -12.65028 -12.33975 -12.01661 -11.93080 -11.73669 -11.67153 -11.27036 -11.03092 -10.78443 -10.66765 -10.29309 -10.06983 -9.56027 -8.83806 -8.67983 -7.86560 -5.20990 0.50860 0.97230 1.45871 1.48031 1.50616 1.56935 1.57713 1.69055 2.02735 2.46433 2.51090 3.32149 3.54503 3.68832 3.76605 3.82634 3.84684 4.01493 4.02815 4.15268 4.17742 4.35020 4.37796 4.40636 4.55093 4.61043 4.66005 4.67585 4.69833 4.79840 4.89960 4.94960 5.03426 5.04817 5.14078 5.15488 5.35361 5.43466 5.45954 5.55476 5.62548 5.72994 6.21519 6.50672 6.51568 6.77472 7.09244 7.19051 7.77383 8.44634 9.25627 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.003265 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.304183 B = 8573.754585 C =10669.492517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.260 6.260 3 C -0.078 4.078 4 H 0.135 0.865 5 C -0.142 4.142 6 C 0.530 3.470 7 O -0.566 6.566 8 N -0.706 5.706 9 C 0.208 3.792 10 C -0.272 4.272 11 C 0.109 3.891 12 N -0.465 5.465 13 H 0.454 0.546 14 N -0.323 5.323 15 C 0.106 3.894 16 C -0.010 4.010 17 H 0.095 0.905 18 C -0.119 4.119 19 C 0.180 3.820 20 N -0.623 5.623 21 C -0.243 4.243 22 H 0.078 0.922 23 C -0.063 4.063 24 N -0.947 5.947 25 Si 0.977 3.023 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.270 1.270 29 C 0.152 3.848 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.225 0.775 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.002 0.998 44 H 0.248 0.752 45 H 0.022 0.978 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 -13.626 -19.886 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.035 6.035 3 C -0.209 4.209 4 H 0.153 0.847 5 C -0.201 4.201 6 C 0.315 3.685 7 O -0.445 6.445 8 N -0.358 5.358 9 C 0.084 3.916 10 C -0.284 4.284 11 C -0.041 4.041 12 N -0.173 5.173 13 H 0.301 0.699 14 N -0.146 5.146 15 C -0.062 4.062 16 C -0.031 4.031 17 H 0.113 0.887 18 C -0.158 4.158 19 C 0.055 3.945 20 N -0.349 5.349 21 C -0.372 4.372 22 H 0.096 0.904 23 C -0.257 4.257 24 N -0.596 5.596 25 Si 0.805 3.195 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.195 1.195 29 C 0.027 3.973 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.241 0.759 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.020 0.980 44 H 0.057 0.943 45 H 0.040 0.960 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.076 -13.757 -19.617 24.304 hybrid contribution -1.278 1.713 0.513 2.198 sum -5.354 -12.044 -19.104 23.210 Atomic orbital electron populations 1.23581 0.91631 1.07654 1.06194 1.87617 1.09430 1.08395 1.98054 1.23287 0.95762 0.97167 1.04724 0.84713 1.22000 1.02972 1.01285 0.93865 1.20035 0.89619 0.82495 0.76337 1.90726 1.61611 1.41647 1.50484 1.46025 1.08612 1.14141 1.67002 1.19321 0.79780 0.91591 1.00869 1.19881 1.19633 0.95112 0.93780 1.23027 0.96212 0.85911 0.98988 1.46353 1.55131 1.06959 1.08832 0.69853 1.77432 1.24752 1.22867 0.89575 1.21846 0.97892 0.91293 0.95123 1.20455 0.95644 0.99290 0.87728 0.88668 1.22870 0.96657 0.99420 0.96860 1.21166 0.85490 0.95669 0.92150 1.44733 1.18976 1.42848 1.28333 1.19373 1.07219 1.11909 0.98716 0.90439 1.25648 1.00604 1.02778 0.96625 1.70163 1.35382 1.42146 1.11901 0.85099 0.77330 0.79100 0.77989 1.21064 1.22004 1.19472 1.21321 0.95103 0.92200 0.88724 0.89423 0.88931 0.86887 0.89257 0.92557 0.90545 0.75300 0.92449 0.89447 0.75853 0.89884 0.92208 0.94984 0.98019 0.94285 0.95995 0.95629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 10.45 113.37 1.19 -0.22 16 2 S -0.26 -5.49 21.04 -56.49 -1.19 -6.67 16 3 C -0.08 -1.43 3.18 29.85 0.09 -1.34 16 4 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 5 C -0.14 -2.56 9.08 71.98 0.65 -1.91 16 6 C 0.53 12.64 7.00 87.66 0.61 13.26 16 7 O -0.57 -18.40 16.04 -3.05 -0.05 -18.44 16 8 N -0.71 -13.79 5.55 -466.79 -2.59 -16.38 16 9 C 0.21 4.24 5.67 85.64 0.49 4.72 16 10 C -0.27 -5.55 5.47 -20.14 -0.11 -5.66 16 11 C 0.11 1.49 11.90 83.54 0.99 2.48 16 12 N -0.46 -8.10 7.36 -57.59 -0.42 -8.53 16 13 H 0.45 4.72 8.96 -213.33 -1.91 2.81 16 14 N -0.32 -9.42 12.33 -47.38 -0.58 -10.00 16 15 C 0.11 3.01 5.76 43.10 0.25 3.26 16 16 C -0.01 -0.36 3.36 -10.35 -0.03 -0.40 16 17 H 0.10 3.16 7.26 -2.39 -0.02 3.15 16 18 C -0.12 -4.68 6.52 31.99 0.21 -4.47 16 19 C 0.18 9.22 5.42 86.86 0.47 9.69 16 20 N -0.62 -33.01 3.39 -691.99 -2.35 -35.36 16 21 C -0.24 -13.96 10.24 84.03 0.86 -13.10 16 22 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 23 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 24 N -0.95 -57.95 10.68 21.65 0.23 -57.72 16 25 Si 0.98 46.30 29.56 68.60 2.03 48.33 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 C 0.15 6.43 6.83 86.73 0.59 7.02 16 30 H 0.09 0.88 7.14 -2.39 -0.02 0.86 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.22 6.92 -2.39 -0.02 1.20 16 34 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.41 6.66 8.46 -92.71 -0.78 5.87 16 37 H 0.06 1.43 7.69 -2.39 -0.02 1.41 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.06 2.44 7.88 -2.39 -0.02 2.42 16 42 H 0.03 1.84 6.94 -2.39 -0.02 1.82 16 43 H 0.00 0.10 8.07 -2.39 -0.02 0.08 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.02 0.96 7.68 -2.38 -0.02 0.94 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -80.92 389.91 0.10 -80.81 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -1.69 Total: 13.83 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.72 Total: 10.13 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.72 Total: -127.99 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.44 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -1.19 Total: -6.67 kcal Total: -80.92 0.10 -80.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130348924.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.908 kcal (2) G-P(sol) polarization free energy of solvation -80.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds