Wall clock time and date at job start Tue Mar 31 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 103.00124 * 2 1 4 4 H 1.09001 * 109.46986 * 305.00090 * 3 2 1 5 5 C 1.53002 * 109.46718 * 64.99971 * 3 2 1 6 6 C 1.50692 * 109.47324 * 185.00243 * 3 2 1 7 7 O 1.21289 * 119.99890 * 339.99912 * 6 3 2 8 8 N 1.34774 * 120.00261 * 160.00161 * 6 3 2 9 9 C 1.46500 * 120.00082 * 179.97438 * 8 6 3 10 10 C 1.50705 * 109.47169 * 179.97438 * 9 8 6 11 11 C 1.35313 * 126.04209 * 260.14446 * 10 9 8 12 12 N 1.34953 * 107.74485 * 180.27076 * 11 10 9 13 13 H 0.97000 * 126.03486 * 179.74758 * 12 11 10 14 14 N 1.40085 * 107.92392 * 359.75378 * 12 11 10 15 15 C 1.30834 * 108.20595 * 359.97438 * 14 12 11 16 16 C 1.50705 * 125.89692 * 179.97438 * 15 14 12 17 17 H 1.09008 * 110.77748 * 178.23622 * 16 15 14 18 18 C 1.55153 * 110.72354 * 54.99718 * 16 15 14 19 19 C 1.55131 * 101.48647 * 205.96741 * 18 16 15 20 20 N 1.47426 * 104.71847 * 37.29562 * 19 18 16 21 21 C 1.36945 * 125.64675 * 155.81671 * 20 19 18 22 22 H 1.07997 * 119.99756 * 179.68946 * 21 20 19 23 23 C 1.38805 * 119.99878 * 359.68852 * 21 20 19 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.47026 * 108.70569 * 335.55014 * 20 19 18 30 30 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47101 * 300.00067 * 1 2 3 32 32 H 1.08997 * 109.47056 * 59.99732 * 1 2 3 33 33 H 1.08998 * 109.47324 * 299.99893 * 5 3 2 34 34 H 1.09001 * 109.47294 * 60.00308 * 5 3 2 35 35 H 1.09000 * 109.47125 * 180.02562 * 5 3 2 36 36 H 0.97004 * 120.00036 * 0.02562 * 8 6 3 37 37 H 1.09005 * 109.46828 * 60.00564 * 9 8 6 38 38 H 1.08997 * 109.47512 * 300.00008 * 9 8 6 39 39 H 1.08001 * 126.12703 * 0.03190 * 11 10 9 40 40 H 1.08999 * 111.00098 * 324.21115 * 18 16 15 41 41 H 1.08999 * 111.00620 * 88.02293 * 18 16 15 42 42 H 1.08994 * 110.50226 * 278.45550 * 19 18 16 43 43 H 1.09001 * 110.34274 * 156.05220 * 19 18 16 44 44 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 45 45 H 1.09003 * 109.87851 * 120.70448 * 29 20 19 46 46 H 1.08997 * 109.87950 * 241.87026 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 3.7142 1.9386 -0.1239 7 8 4.4552 1.0199 0.1555 8 7 4.2253 3.1124 -0.5450 9 6 5.6758 3.2789 -0.6649 10 6 5.9831 4.6715 -1.1522 11 6 6.2842 5.0216 -2.4241 12 7 6.4976 6.3540 -2.4444 13 1 6.7347 6.8821 -3.2227 14 7 6.3163 6.8395 -1.1430 15 6 6.0043 5.8309 -0.3702 16 6 5.7235 5.9046 1.1087 17 1 5.4585 4.9229 1.5013 18 6 4.6017 6.9350 1.4038 19 6 4.9372 7.3480 2.8611 20 7 6.4103 7.3754 2.9129 21 6 7.1644 8.1035 3.7941 22 1 8.2424 8.0514 3.7537 23 6 6.5433 8.9083 4.7392 24 7 5.2295 8.9714 4.7887 25 14 7.5720 9.9010 5.9417 26 1 6.6761 10.6724 6.8403 27 1 8.4128 8.9819 6.7500 28 1 8.4448 10.8383 5.1902 29 6 6.9356 6.4866 1.8661 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 0.6636 2.2778 1.3970 34 1 2.2354 1.9149 2.1492 35 1 1.9876 3.4637 1.3073 36 1 3.6327 3.8473 -0.7681 37 1 6.0675 2.5510 -1.3756 38 1 6.1411 3.1232 0.3084 39 1 6.3466 4.3537 -3.2706 40 1 4.6666 7.7876 0.7278 41 1 3.6182 6.4686 1.3478 42 1 4.5464 6.6137 3.5655 43 1 4.5316 8.3362 3.0778 44 1 4.7955 9.5335 5.4494 45 1 7.5643 7.0537 1.1796 46 1 7.5117 5.6800 2.3195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130348925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:15 Heat of formation + Delta-G solvation = 64.599291 kcal Electronic energy + Delta-G solvation = -27158.289495 eV Core-core repulsion = 23404.652477 eV Total energy + Delta-G solvation = -3753.637017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38423 -39.71182 -37.28828 -35.09682 -33.60948 -33.07054 -31.27638 -30.58995 -29.12186 -29.08831 -27.46847 -26.23096 -24.64593 -24.30766 -22.05616 -20.67149 -20.29565 -20.08211 -18.72582 -18.22329 -17.25943 -16.87646 -16.79355 -15.64572 -15.40045 -14.97689 -14.61398 -14.57959 -14.43319 -14.20514 -14.11405 -13.86156 -13.62847 -13.19294 -12.98573 -12.79648 -12.58809 -12.34007 -12.17858 -12.01039 -11.93816 -11.81013 -11.53553 -11.05314 -10.80753 -10.75403 -10.53818 -10.12076 -10.11409 -10.06150 -10.05390 -9.75169 -9.46796 -9.17940 -9.14318 -8.65887 -8.59253 -7.89979 -6.76553 -5.59729 -3.00740 1.20981 1.81223 2.24423 2.50292 2.58295 2.84862 3.31694 3.44600 3.48332 3.49770 4.45563 4.52803 4.54688 4.63753 4.68337 4.71961 4.81784 4.85810 5.08352 5.22570 5.25581 5.36465 5.39014 5.46732 5.53933 5.55507 5.68176 5.75830 5.84587 5.92546 5.95309 6.04612 6.28992 6.40639 6.51693 6.59782 6.71532 6.77096 6.98212 7.23392 7.34617 7.56280 7.68083 7.76023 7.90335 8.05603 8.42005 9.27956 9.88749 10.53805 11.44174 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.002888 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.186710 B = 9694.121780 C =11374.867765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.190 6.190 3 C -0.092 4.092 4 H 0.106 0.894 5 C -0.145 4.145 6 C 0.533 3.467 7 O -0.521 6.521 8 N -0.717 5.717 9 C 0.204 3.796 10 C -0.264 4.264 11 C 0.076 3.924 12 N -0.480 5.480 13 H 0.439 0.561 14 N -0.277 5.277 15 C 0.121 3.879 16 C -0.029 4.029 17 H 0.088 0.912 18 C -0.130 4.130 19 C 0.152 3.848 20 N -0.602 5.602 21 C -0.218 4.218 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.290 1.290 27 H -0.286 1.286 28 H -0.286 1.286 29 C 0.148 3.852 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.175 0.825 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.012 0.988 43 H 0.108 0.892 44 H 0.252 0.748 45 H 0.029 0.971 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 -13.416 -17.184 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.035 5.965 3 C -0.224 4.224 4 H 0.124 0.876 5 C -0.204 4.204 6 C 0.317 3.683 7 O -0.397 6.397 8 N -0.369 5.369 9 C 0.080 3.920 10 C -0.276 4.276 11 C -0.073 4.073 12 N -0.186 5.186 13 H 0.282 0.718 14 N -0.098 5.098 15 C -0.047 4.047 16 C -0.050 4.050 17 H 0.106 0.894 18 C -0.170 4.170 19 C 0.028 3.972 20 N -0.328 5.328 21 C -0.347 4.347 22 H 0.094 0.906 23 C -0.207 4.207 24 N -0.573 5.573 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.212 1.212 29 C 0.022 3.978 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.236 0.764 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.192 0.808 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.125 0.875 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.435 -13.553 -16.878 22.887 hybrid contribution -0.616 1.305 -0.073 1.445 sum -8.050 -12.248 -16.951 22.409 Atomic orbital electron populations 1.23549 0.95774 1.06592 1.04960 1.87417 1.04768 1.06429 1.97872 1.23347 0.97383 0.98139 1.03554 0.87626 1.22020 1.01863 1.01658 0.94859 1.19610 0.88673 0.82833 0.77212 1.90755 1.60373 1.40121 1.48413 1.46082 1.08500 1.14350 1.67985 1.19409 0.79621 0.91353 1.01629 1.19929 1.18472 0.96064 0.93142 1.22370 0.99868 0.86376 0.98716 1.46387 1.56066 1.06258 1.09900 0.71774 1.77548 1.23121 1.21731 0.87430 1.22275 0.96188 0.89679 0.96600 1.20756 0.98586 1.00316 0.85297 0.89422 1.23108 0.95322 0.97155 1.01383 1.21990 0.84120 1.02600 0.88531 1.44463 1.02123 1.50293 1.35962 1.19033 0.89864 1.18031 1.07752 0.90610 1.24760 0.95865 1.00553 0.99562 1.69775 1.06744 1.43279 1.37478 0.86152 0.78830 0.79842 0.80689 1.21607 1.21243 1.21243 1.21268 0.93072 0.92817 0.90669 0.87880 0.90253 0.90630 0.91339 0.90351 0.90610 0.76390 0.90915 0.90307 0.80817 0.91528 0.92607 0.96989 0.87461 0.93770 0.95312 0.96056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 10.45 101.05 1.06 0.16 16 2 S -0.19 -2.00 21.04 -107.50 -2.26 -4.26 16 3 C -0.09 -0.86 3.18 -27.89 -0.09 -0.95 16 4 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 5 C -0.14 -1.24 9.08 37.16 0.34 -0.91 16 6 C 0.53 6.37 7.00 -10.99 -0.08 6.30 16 7 O -0.52 -8.33 16.04 5.55 0.09 -8.24 16 8 N -0.72 -7.33 5.55 -61.47 -0.34 -7.67 16 9 C 0.20 2.28 5.65 -5.19 -0.03 2.25 16 10 C -0.26 -3.09 5.47 -105.05 -0.57 -3.66 16 11 C 0.08 0.70 11.90 -17.22 -0.20 0.50 16 12 N -0.48 -5.10 7.36 30.45 0.22 -4.88 16 13 H 0.44 3.16 8.96 -182.61 -1.64 1.52 16 14 N -0.28 -4.34 12.33 33.67 0.42 -3.93 16 15 C 0.12 1.84 5.76 -82.40 -0.47 1.36 16 16 C -0.03 -0.51 3.36 -89.94 -0.30 -0.81 16 17 H 0.09 1.46 7.32 -51.92 -0.38 1.08 16 18 C -0.13 -2.47 6.53 -24.46 -0.16 -2.63 16 19 C 0.15 3.72 5.91 -2.41 -0.01 3.70 16 20 N -0.60 -15.80 3.39 -169.93 -0.58 -16.38 16 21 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 22 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 23 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 24 N -0.92 -27.12 10.08 55.49 0.56 -26.56 16 25 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 29 C 0.15 3.25 6.83 -3.06 -0.02 3.23 16 30 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 0.45 7.14 -51.93 -0.37 0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 6.92 -51.93 -0.36 0.11 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 3.44 8.46 -40.82 -0.35 3.10 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.03 7.77 -51.93 -0.40 0.62 16 39 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.07 1.33 7.88 -51.93 -0.41 0.92 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.11 2.95 5.86 -51.93 -0.30 2.64 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.03 0.66 7.68 -51.93 -0.40 0.26 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -35.40 389.00 -10.24 -45.63 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.38 Total: 1.29 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.80 Total: 1.71 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.28 Total: -59.41 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -2.26 Total: -4.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.40 -10.24 -45.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130348925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.234 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds