Wall clock time and date at job start Tue Mar 31 2020 21:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 103.00124 * 2 1 4 4 H 1.09001 * 109.46986 * 305.00090 * 3 2 1 5 5 C 1.53002 * 109.46718 * 64.99971 * 3 2 1 6 6 C 1.50692 * 109.47324 * 185.00243 * 3 2 1 7 7 O 1.21289 * 119.99890 * 339.99912 * 6 3 2 8 8 N 1.34774 * 120.00261 * 160.00161 * 6 3 2 9 9 C 1.46500 * 120.00082 * 179.97438 * 8 6 3 10 10 C 1.50705 * 109.47169 * 179.97438 * 9 8 6 11 11 C 1.35313 * 126.04209 * 260.14446 * 10 9 8 12 12 N 1.34953 * 107.74485 * 180.27076 * 11 10 9 13 13 H 0.97000 * 126.03486 * 179.74758 * 12 11 10 14 14 N 1.40085 * 107.92392 * 359.75378 * 12 11 10 15 15 C 1.30834 * 108.20595 * 359.97438 * 14 12 11 16 16 C 1.50705 * 125.89692 * 179.97438 * 15 14 12 17 17 H 1.09008 * 110.77748 * 178.23622 * 16 15 14 18 18 C 1.55153 * 110.72354 * 54.99718 * 16 15 14 19 19 C 1.55131 * 101.48647 * 205.96741 * 18 16 15 20 20 N 1.47426 * 104.71847 * 37.29562 * 19 18 16 21 21 C 1.36945 * 125.64675 * 155.81671 * 20 19 18 22 22 H 1.07997 * 119.99756 * 179.68946 * 21 20 19 23 23 C 1.38805 * 119.99878 * 359.68852 * 21 20 19 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.47026 * 108.70569 * 335.55014 * 20 19 18 30 30 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47101 * 300.00067 * 1 2 3 32 32 H 1.08997 * 109.47056 * 59.99732 * 1 2 3 33 33 H 1.08998 * 109.47324 * 299.99893 * 5 3 2 34 34 H 1.09001 * 109.47294 * 60.00308 * 5 3 2 35 35 H 1.09000 * 109.47125 * 180.02562 * 5 3 2 36 36 H 0.97004 * 120.00036 * 0.02562 * 8 6 3 37 37 H 1.09005 * 109.46828 * 60.00564 * 9 8 6 38 38 H 1.08997 * 109.47512 * 300.00008 * 9 8 6 39 39 H 1.08001 * 126.12703 * 0.03190 * 11 10 9 40 40 H 1.08999 * 111.00098 * 324.21115 * 18 16 15 41 41 H 1.08999 * 111.00620 * 88.02293 * 18 16 15 42 42 H 1.08994 * 110.50226 * 278.45550 * 19 18 16 43 43 H 1.09001 * 110.34274 * 156.05220 * 19 18 16 44 44 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 45 45 H 1.09003 * 109.87851 * 120.70448 * 29 20 19 46 46 H 1.08997 * 109.87950 * 241.87026 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 3.7142 1.9386 -0.1239 7 8 4.4552 1.0199 0.1555 8 7 4.2253 3.1124 -0.5450 9 6 5.6758 3.2789 -0.6649 10 6 5.9831 4.6715 -1.1522 11 6 6.2842 5.0216 -2.4241 12 7 6.4976 6.3540 -2.4444 13 1 6.7347 6.8821 -3.2227 14 7 6.3163 6.8395 -1.1430 15 6 6.0043 5.8309 -0.3702 16 6 5.7235 5.9046 1.1087 17 1 5.4585 4.9229 1.5013 18 6 4.6017 6.9350 1.4038 19 6 4.9372 7.3480 2.8611 20 7 6.4103 7.3754 2.9129 21 6 7.1644 8.1035 3.7941 22 1 8.2424 8.0514 3.7537 23 6 6.5433 8.9083 4.7392 24 7 5.2295 8.9714 4.7887 25 14 7.5720 9.9010 5.9417 26 1 6.6761 10.6724 6.8403 27 1 8.4128 8.9819 6.7500 28 1 8.4448 10.8383 5.1902 29 6 6.9356 6.4866 1.8661 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 0.6636 2.2778 1.3970 34 1 2.2354 1.9149 2.1492 35 1 1.9876 3.4637 1.3073 36 1 3.6327 3.8473 -0.7681 37 1 6.0675 2.5510 -1.3756 38 1 6.1411 3.1232 0.3084 39 1 6.3466 4.3537 -3.2706 40 1 4.6666 7.7876 0.7278 41 1 3.6182 6.4686 1.3478 42 1 4.5464 6.6137 3.5655 43 1 4.5316 8.3362 3.0778 44 1 4.7955 9.5335 5.4494 45 1 7.5643 7.0537 1.1796 46 1 7.5117 5.6800 2.3195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130348925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:14 Heat of formation + Delta-G solvation = 39.505558 kcal Electronic energy + Delta-G solvation = -27159.377640 eV Core-core repulsion = 23404.652477 eV Total energy + Delta-G solvation = -3754.725163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35964 -40.63960 -39.01958 -36.04689 -34.91007 -34.34042 -32.73946 -31.52881 -30.89687 -29.59519 -29.12953 -27.07993 -26.62360 -25.06635 -23.41464 -22.05519 -21.55810 -21.25968 -20.04895 -19.08934 -18.84784 -18.09709 -17.69217 -16.88938 -16.51064 -16.36326 -16.13760 -15.74855 -15.46424 -15.26605 -14.98654 -14.87637 -14.46438 -14.32198 -14.08217 -13.83521 -13.72879 -13.56324 -13.40670 -13.34623 -13.08823 -12.95460 -12.87297 -12.68656 -12.63009 -12.31740 -12.05083 -11.89238 -11.72368 -11.64106 -11.18095 -11.02304 -10.76399 -10.73434 -10.29718 -10.06829 -9.56274 -8.87217 -8.67172 -7.76313 -5.20718 0.52155 0.97108 1.45495 1.49334 1.50957 1.55645 1.58072 1.70597 2.02690 2.45610 2.51220 3.32082 3.54962 3.70381 3.76783 3.84596 3.87032 4.03073 4.05376 4.15187 4.17798 4.35285 4.39191 4.41639 4.55131 4.64092 4.68038 4.70434 4.71681 4.79596 4.88639 4.96401 5.04865 5.06324 5.13973 5.18234 5.33299 5.43398 5.46332 5.57245 5.67796 5.82040 6.32597 6.50771 6.53267 6.77523 7.12143 7.20970 7.78735 8.42858 9.25083 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.002888 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.186710 B = 9694.121780 C =11374.867765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.265 6.265 3 C -0.077 4.077 4 H 0.136 0.864 5 C -0.143 4.143 6 C 0.529 3.471 7 O -0.568 6.568 8 N -0.704 5.704 9 C 0.209 3.791 10 C -0.272 4.272 11 C 0.109 3.891 12 N -0.465 5.465 13 H 0.454 0.546 14 N -0.324 5.324 15 C 0.105 3.895 16 C -0.010 4.010 17 H 0.096 0.904 18 C -0.111 4.111 19 C 0.154 3.846 20 N -0.624 5.624 21 C -0.242 4.242 22 H 0.075 0.925 23 C -0.065 4.065 24 N -0.946 5.946 25 Si 0.980 3.020 26 H -0.290 1.290 27 H -0.279 1.279 28 H -0.279 1.279 29 C 0.146 3.854 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.413 0.587 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.225 0.775 40 H 0.056 0.944 41 H 0.090 0.910 42 H -0.007 1.007 43 H 0.074 0.926 44 H 0.248 0.752 45 H 0.018 0.982 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.747 -13.820 -19.617 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.040 6.040 3 C -0.208 4.208 4 H 0.154 0.846 5 C -0.202 4.202 6 C 0.314 3.686 7 O -0.447 6.447 8 N -0.356 5.356 9 C 0.085 3.915 10 C -0.284 4.284 11 C -0.042 4.042 12 N -0.173 5.173 13 H 0.301 0.699 14 N -0.147 5.147 15 C -0.062 4.062 16 C -0.031 4.031 17 H 0.114 0.886 18 C -0.150 4.150 19 C 0.029 3.971 20 N -0.351 5.351 21 C -0.371 4.371 22 H 0.093 0.907 23 C -0.257 4.257 24 N -0.596 5.596 25 Si 0.808 3.192 26 H -0.215 1.215 27 H -0.205 1.205 28 H -0.205 1.205 29 C 0.020 3.980 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.242 0.758 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.011 0.989 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.322 -13.931 -19.346 25.251 hybrid contribution -0.319 1.424 0.609 1.582 sum -8.641 -12.506 -18.737 24.128 Atomic orbital electron populations 1.23574 0.91528 1.07615 1.06244 1.87682 1.09534 1.08704 1.98068 1.23289 0.95552 0.97012 1.04972 0.84565 1.22017 1.02984 1.01532 0.93640 1.20087 0.89710 0.82482 0.76307 1.90735 1.61705 1.41724 1.50497 1.45993 1.08401 1.14192 1.67035 1.19288 0.79977 0.91503 1.00734 1.19884 1.19740 0.95039 0.93719 1.23031 0.96208 0.85893 0.99043 1.46357 1.54943 1.07141 1.08864 0.69874 1.77445 1.24554 1.23045 0.89661 1.21865 0.97827 0.91267 0.95210 1.20462 0.95705 0.99659 0.87244 0.88565 1.22874 0.97629 0.97460 0.97033 1.21794 0.83311 1.00269 0.91701 1.44774 1.02982 1.50855 1.36442 1.19385 0.90324 1.18718 1.08664 0.90711 1.25609 0.97119 1.01687 1.01334 1.70031 1.08055 1.43700 1.37822 0.85127 0.77349 0.78315 0.78382 1.21544 1.20505 1.20478 1.21366 0.94901 0.91935 0.89829 0.87023 0.89297 0.88902 0.89197 0.92658 0.89990 0.75100 0.89585 0.92746 0.75845 0.92514 0.89135 0.98921 0.90853 0.94235 0.96438 0.96417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.45 113.37 1.19 -0.07 16 2 S -0.27 -5.35 21.04 -56.49 -1.19 -6.53 16 3 C -0.08 -1.29 3.18 29.85 0.09 -1.19 16 4 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 5 C -0.14 -2.21 9.08 71.98 0.65 -1.56 16 6 C 0.53 12.06 7.00 87.65 0.61 12.68 16 7 O -0.57 -18.25 16.04 -3.06 -0.05 -18.30 16 8 N -0.70 -12.93 5.55 -466.78 -2.59 -15.52 16 9 C 0.21 4.28 5.65 85.63 0.48 4.77 16 10 C -0.27 -5.63 5.47 -20.14 -0.11 -5.74 16 11 C 0.11 1.52 11.90 83.54 0.99 2.52 16 12 N -0.47 -8.36 7.36 -57.59 -0.42 -8.79 16 13 H 0.45 4.97 8.96 -213.33 -1.91 3.06 16 14 N -0.32 -9.67 12.33 -47.38 -0.58 -10.26 16 15 C 0.11 3.06 5.76 43.10 0.25 3.30 16 16 C -0.01 -0.35 3.36 -10.35 -0.03 -0.38 16 17 H 0.10 3.18 7.32 -2.38 -0.02 3.16 16 18 C -0.11 -4.19 6.53 32.06 0.21 -3.98 16 19 C 0.15 7.77 5.91 86.93 0.51 8.28 16 20 N -0.62 -33.88 3.39 -691.55 -2.35 -36.23 16 21 C -0.24 -14.22 10.27 84.03 0.86 -13.36 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 23 C -0.06 -3.79 5.49 84.86 0.47 -3.32 16 24 N -0.95 -57.28 10.08 21.65 0.22 -57.06 16 25 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 29 C 0.15 6.54 6.83 86.73 0.59 7.13 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.76 7.14 -2.39 -0.02 0.75 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 1.00 6.92 -2.39 -0.02 0.98 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.41 5.83 8.46 -92.71 -0.78 5.04 16 37 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.05 1.40 7.77 -2.39 -0.02 1.38 16 39 H 0.23 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.06 2.27 7.88 -2.39 -0.02 2.25 16 41 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.07 4.21 5.86 -2.39 -0.01 4.20 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.02 0.82 7.68 -2.39 -0.02 0.81 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -81.91 389.00 0.15 -81.76 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -1.69 Total: 12.93 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.77 Total: 9.08 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -5.73 Total: -127.86 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.19 Total: -6.53 kcal Total: -81.91 0.15 -81.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130348925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.265 kcal (2) G-P(sol) polarization free energy of solvation -81.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds