Wall clock time and date at job start Tue Mar 31 2020 20:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 C 1.52997 * 109.46837 * 240.00137 * 2 1 3 5 5 C 1.50692 * 109.47564 * 65.00140 * 4 2 1 6 6 O 1.21285 * 119.99698 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00234 * 179.97438 * 5 4 2 8 8 C 1.46505 * 120.00093 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47355 * 180.02562 * 8 7 5 10 10 H 1.09002 * 108.57306 * 59.99891 * 9 8 7 11 11 C 1.46921 * 108.62412 * 177.94551 * 9 8 7 12 12 N 1.50103 * 106.78624 * 178.04433 * 11 9 8 13 13 C 1.36941 * 120.75012 * 111.17270 * 12 11 9 14 14 H 1.08003 * 119.99391 * 155.71611 * 13 12 11 15 15 C 1.38811 * 120.00259 * 335.72397 * 13 12 11 16 16 N 1.31621 * 119.99768 * 340.85509 * 15 13 12 17 17 Si 1.86797 * 120.00198 * 160.85813 * 15 13 12 18 18 H 1.48504 * 109.46897 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47038 * 119.99451 * 17 15 13 20 20 H 1.48499 * 109.46967 * 239.99854 * 17 15 13 21 21 C 1.43417 * 118.61232 * 291.15040 * 12 11 9 22 22 C 1.55331 * 116.23829 * 89.40521 * 21 12 11 23 23 C 1.55189 * 108.87418 * 319.46634 * 22 21 12 24 24 O 1.39637 * 110.57077 * 322.14143 * 23 22 21 25 25 C 1.53001 * 109.47022 * 120.00271 * 2 1 3 26 26 F 1.39897 * 109.47151 * 179.97438 * 25 2 1 27 27 F 1.39906 * 109.47043 * 300.00177 * 25 2 1 28 28 F 1.39901 * 109.47014 * 59.99560 * 25 2 1 29 29 H 1.08994 * 109.47084 * 299.99898 * 1 2 3 30 30 H 1.08997 * 109.46805 * 60.00005 * 1 2 3 31 31 H 1.09003 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47445 * 304.99201 * 4 2 1 33 33 H 1.09005 * 109.46727 * 185.00256 * 4 2 1 34 34 H 0.96999 * 120.00601 * 0.02562 * 7 5 4 35 35 H 1.09005 * 109.47191 * 300.00265 * 8 7 5 36 36 H 1.09003 * 109.46928 * 59.99779 * 8 7 5 37 37 H 1.09002 * 109.98674 * 297.23617 * 11 9 8 38 38 H 1.08997 * 109.99016 * 58.59780 * 11 9 8 39 39 H 0.96999 * 119.99672 * 180.02562 * 16 15 13 40 40 H 1.08998 * 108.13051 * 327.65013 * 21 12 11 41 41 H 1.09001 * 107.96426 * 211.03723 * 21 12 11 42 42 H 1.08997 * 109.57108 * 199.64719 * 22 21 12 43 43 H 1.09004 * 109.56689 * 79.28247 * 22 21 12 44 44 H 1.09000 * 109.25840 * 201.85908 * 23 22 21 45 45 H 1.09004 * 109.25837 * 82.42449 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9853 -0.3914 -3.7001 8 6 1.5983 0.3655 -4.8932 9 6 2.1081 -0.3558 -6.1425 10 1 1.6646 -1.3510 -6.1740 11 6 1.6679 0.3917 -7.3283 12 7 2.2293 -0.3220 -8.5236 13 6 1.4059 -0.9875 -9.3922 14 1 1.7191 -1.1545 -10.4122 15 6 0.1689 -1.4472 -8.9617 16 7 -0.0683 -1.5912 -7.6751 17 14 -1.1591 -1.8614 -10.2084 18 1 -0.6451 -1.6145 -11.5796 19 1 -1.5381 -3.2907 -10.0713 20 1 -2.3497 -1.0079 -9.9653 21 6 3.6470 -0.2922 -8.7379 22 6 4.4665 -1.4305 -8.0705 23 6 3.8987 -1.6915 -6.6500 24 8 3.5220 -0.4912 -6.0441 25 6 2.0401 -0.7213 1.2492 26 9 3.4390 -0.7218 1.2490 27 9 1.5736 -0.0619 2.3916 28 9 1.5736 -2.0403 1.2492 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7198 -1.2952 33 1 3.1263 -0.7995 -1.2056 34 1 2.4892 -1.2153 -3.7908 35 1 0.5119 0.4439 -4.9373 36 1 2.0330 1.3640 -4.8469 37 1 0.5792 0.4012 -7.3797 38 1 2.0490 1.4121 -7.2882 39 1 -0.9326 -1.9128 -7.3743 40 1 4.0261 0.6603 -8.3679 41 1 3.8254 -0.3311 -9.8126 42 1 5.5123 -1.1325 -7.9966 43 1 4.3850 -2.3381 -8.6687 44 1 4.6614 -2.1775 -6.0416 45 1 3.0293 -2.3448 -6.7248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150211361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:52 Heat of formation + Delta-G solvation = -217.161597 kcal Electronic energy + Delta-G solvation = -30879.531977 eV Core-core repulsion = 26096.774529 eV Total energy + Delta-G solvation = -4782.757448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.31978 -47.80234 -47.77790 -39.89732 -38.89916 -35.47444 -35.02102 -34.44027 -32.25989 -31.26992 -29.12963 -28.01512 -26.50196 -25.41171 -25.14777 -22.72487 -21.63348 -20.87298 -20.07616 -19.63960 -18.77671 -18.53996 -17.74514 -17.17145 -16.46246 -16.18678 -15.71946 -15.54051 -14.94532 -14.76571 -14.70706 -14.48485 -14.23441 -14.21436 -13.98481 -13.94294 -13.90189 -13.78718 -13.37691 -13.09653 -13.05047 -12.77358 -12.46953 -12.18608 -12.00850 -11.59740 -11.54663 -11.47933 -11.42030 -11.24826 -10.90258 -10.78893 -10.50412 -10.19917 -10.02566 -9.79472 -9.68726 -9.55122 -8.86177 -8.76714 -8.55846 -6.87165 -5.97354 -3.35721 2.49739 2.71849 3.24699 3.29298 3.38846 3.40461 3.64154 3.85072 3.88134 4.39414 4.45213 4.61764 4.64389 4.86585 5.07594 5.18913 5.23659 5.28445 5.30064 5.58004 5.66549 5.70887 5.77114 5.87106 5.93619 6.07097 6.10361 6.27439 6.35497 6.41696 6.49749 6.62209 6.65380 6.76690 6.85164 6.91027 7.06461 7.27139 7.67709 7.69152 8.07182 8.27211 8.34633 9.02300 9.70339 10.24486 11.11920 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.002662 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.505104 B =10517.495812 C =11364.106804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.145 4.145 5 C 0.516 3.484 6 O -0.545 6.545 7 N -0.710 5.710 8 C 0.121 3.879 9 C 0.060 3.940 10 H 0.107 0.893 11 C 0.143 3.857 12 N -0.588 5.588 13 C -0.247 4.247 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.288 1.288 21 C 0.160 3.840 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.370 6.370 25 C 0.453 3.547 26 F -0.185 7.185 27 F -0.183 7.183 28 F -0.183 7.183 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.402 0.598 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.020 0.980 39 H 0.255 0.745 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 0.038 14.652 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.140 0.860 4 C -0.186 4.186 5 C 0.301 3.699 6 O -0.424 6.424 7 N -0.360 5.360 8 C -0.003 4.003 9 C 0.001 3.999 10 H 0.125 0.875 11 C 0.018 3.982 12 N -0.308 5.308 13 C -0.377 4.377 14 H 0.088 0.912 15 C -0.196 4.196 16 N -0.554 5.554 17 Si 0.734 3.266 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.215 1.215 21 C 0.031 3.969 22 C -0.213 4.213 23 C -0.011 4.011 24 O -0.289 6.289 25 C 0.398 3.602 26 F -0.166 7.166 27 F -0.164 7.164 28 F -0.164 7.164 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.236 0.764 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.297 0.863 14.851 15.484 hybrid contribution -0.354 -1.165 -0.503 1.317 sum 3.944 -0.302 14.347 14.883 Atomic orbital electron populations 1.22015 0.90879 1.03460 1.05276 1.22155 1.00389 1.01631 0.89390 0.85958 1.21713 1.03891 1.00881 0.92071 1.20106 0.79697 0.85621 0.84456 1.90670 1.40460 1.24681 1.86609 1.45911 1.56586 1.27745 1.05722 1.21736 1.00242 0.95235 0.83104 1.22216 0.80413 1.03779 0.93450 0.87504 1.20744 1.01153 0.91384 0.84946 1.44120 1.00256 1.58545 1.27903 1.19310 0.97549 1.29412 0.91394 0.91230 1.24897 0.99704 0.99094 0.95899 1.69867 1.23033 1.49768 1.12712 0.86195 0.81976 0.77498 0.80928 1.20374 1.21825 1.21509 1.20385 0.84790 0.94849 0.96874 1.23578 0.98841 1.01603 0.97292 1.22348 0.99130 0.86817 0.92788 1.87510 1.23179 1.40841 1.77336 1.20696 0.75355 0.77747 0.86353 1.93180 1.30185 1.96432 1.96814 1.93175 1.88472 1.80766 1.54008 1.93172 1.88435 1.37979 1.96828 0.91530 0.88118 0.91781 0.87588 0.87723 0.76414 0.90255 0.91905 0.87805 0.96235 0.93528 0.94994 0.94872 0.93164 0.92483 0.93075 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.69 37.16 0.32 -1.27 16 2 C -0.12 -1.13 2.01 -90.62 -0.18 -1.31 16 3 H 0.12 1.21 7.95 -51.93 -0.41 0.79 16 4 C -0.15 -1.42 4.93 -27.89 -0.14 -1.56 16 5 C 0.52 7.00 7.55 -10.99 -0.08 6.92 16 6 O -0.55 -9.01 13.96 5.55 0.08 -8.93 16 7 N -0.71 -10.15 5.41 -60.29 -0.33 -10.47 16 8 C 0.12 2.07 5.25 -4.04 -0.02 2.05 16 9 C 0.06 1.16 1.98 -29.65 -0.06 1.10 16 10 H 0.11 2.33 5.24 -51.93 -0.27 2.05 16 11 C 0.14 3.11 4.71 -4.94 -0.02 3.09 16 12 N -0.59 -13.70 2.61 -174.52 -0.46 -14.16 16 13 C -0.25 -6.29 9.62 -15.06 -0.14 -6.44 16 14 H 0.07 1.78 7.87 -52.48 -0.41 1.37 16 15 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 16 N -0.91 -23.02 9.56 55.49 0.53 -22.49 16 17 Si 0.90 20.46 29.59 -169.99 -5.03 15.43 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.16 3.28 5.33 -4.44 -0.02 3.26 16 22 C -0.17 -3.10 6.75 -24.34 -0.16 -3.26 16 23 C 0.07 1.19 6.38 38.32 0.24 1.44 16 24 O -0.37 -6.86 9.44 -31.93 -0.30 -7.16 16 25 C 0.45 4.44 2.69 37.16 0.10 4.54 16 26 F -0.18 -1.89 16.71 2.25 0.04 -1.85 16 27 F -0.18 -1.90 16.80 2.25 0.04 -1.86 16 28 F -0.18 -1.87 16.37 2.25 0.04 -1.83 16 29 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 30 H 0.10 1.21 5.95 -51.93 -0.31 0.91 16 31 H 0.06 0.59 7.80 -51.93 -0.41 0.19 16 32 H 0.11 0.90 7.94 -51.93 -0.41 0.49 16 33 H 0.10 0.88 7.66 -51.93 -0.40 0.48 16 34 H 0.40 5.13 8.26 -40.82 -0.34 4.79 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.10 2.50 6.03 -51.93 -0.31 2.18 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 40 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 41 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.26 6.66 -51.93 -0.35 0.92 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -27.10 364.86 -6.68 -33.77 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.52 Total: 5.54 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.26 Total: 8.52 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.25 Total: -47.12 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.22 Total: -16.09 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.11 Total: -5.55 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.10 -6.68 -33.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150211361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.387 kcal (2) G-P(sol) polarization free energy of solvation -27.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds