Wall clock time and date at job start Tue Mar 31 2020 20:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 C 1.52997 * 109.46837 * 240.00137 * 2 1 3 5 5 C 1.50692 * 109.47564 * 65.00140 * 4 2 1 6 6 O 1.21285 * 119.99698 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00234 * 179.97438 * 5 4 2 8 8 C 1.46505 * 120.00093 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47355 * 180.02562 * 8 7 5 10 10 H 1.09002 * 108.57306 * 59.99891 * 9 8 7 11 11 C 1.46921 * 108.62412 * 177.94551 * 9 8 7 12 12 N 1.50103 * 106.78624 * 178.04433 * 11 9 8 13 13 C 1.36941 * 120.75012 * 111.17270 * 12 11 9 14 14 H 1.08003 * 119.99391 * 155.71611 * 13 12 11 15 15 C 1.38811 * 120.00259 * 335.72397 * 13 12 11 16 16 N 1.31621 * 119.99768 * 340.85509 * 15 13 12 17 17 Si 1.86797 * 120.00198 * 160.85813 * 15 13 12 18 18 H 1.48504 * 109.46897 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47038 * 119.99451 * 17 15 13 20 20 H 1.48499 * 109.46967 * 239.99854 * 17 15 13 21 21 C 1.43417 * 118.61232 * 291.15040 * 12 11 9 22 22 C 1.55331 * 116.23829 * 89.40521 * 21 12 11 23 23 C 1.55189 * 108.87418 * 319.46634 * 22 21 12 24 24 O 1.39637 * 110.57077 * 322.14143 * 23 22 21 25 25 C 1.53001 * 109.47022 * 120.00271 * 2 1 3 26 26 F 1.39897 * 109.47151 * 179.97438 * 25 2 1 27 27 F 1.39906 * 109.47043 * 300.00177 * 25 2 1 28 28 F 1.39901 * 109.47014 * 59.99560 * 25 2 1 29 29 H 1.08994 * 109.47084 * 299.99898 * 1 2 3 30 30 H 1.08997 * 109.46805 * 60.00005 * 1 2 3 31 31 H 1.09003 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47445 * 304.99201 * 4 2 1 33 33 H 1.09005 * 109.46727 * 185.00256 * 4 2 1 34 34 H 0.96999 * 120.00601 * 0.02562 * 7 5 4 35 35 H 1.09005 * 109.47191 * 300.00265 * 8 7 5 36 36 H 1.09003 * 109.46928 * 59.99779 * 8 7 5 37 37 H 1.09002 * 109.98674 * 297.23617 * 11 9 8 38 38 H 1.08997 * 109.99016 * 58.59780 * 11 9 8 39 39 H 0.96999 * 119.99672 * 180.02562 * 16 15 13 40 40 H 1.08998 * 108.13051 * 327.65013 * 21 12 11 41 41 H 1.09001 * 107.96426 * 211.03723 * 21 12 11 42 42 H 1.08997 * 109.57108 * 199.64719 * 22 21 12 43 43 H 1.09004 * 109.56689 * 79.28247 * 22 21 12 44 44 H 1.09000 * 109.25840 * 201.85908 * 23 22 21 45 45 H 1.09004 * 109.25837 * 82.42449 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9853 -0.3914 -3.7001 8 6 1.5983 0.3655 -4.8932 9 6 2.1081 -0.3558 -6.1425 10 1 1.6646 -1.3510 -6.1740 11 6 1.6679 0.3917 -7.3283 12 7 2.2293 -0.3220 -8.5236 13 6 1.4059 -0.9875 -9.3922 14 1 1.7191 -1.1545 -10.4122 15 6 0.1689 -1.4472 -8.9617 16 7 -0.0683 -1.5912 -7.6751 17 14 -1.1591 -1.8614 -10.2084 18 1 -0.6451 -1.6145 -11.5796 19 1 -1.5381 -3.2907 -10.0713 20 1 -2.3497 -1.0079 -9.9653 21 6 3.6470 -0.2922 -8.7379 22 6 4.4665 -1.4305 -8.0705 23 6 3.8987 -1.6915 -6.6500 24 8 3.5220 -0.4912 -6.0441 25 6 2.0401 -0.7213 1.2492 26 9 3.4390 -0.7218 1.2490 27 9 1.5736 -0.0619 2.3916 28 9 1.5736 -2.0403 1.2492 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7198 -1.2952 33 1 3.1263 -0.7995 -1.2056 34 1 2.4892 -1.2153 -3.7908 35 1 0.5119 0.4439 -4.9373 36 1 2.0330 1.3640 -4.8469 37 1 0.5792 0.4012 -7.3797 38 1 2.0490 1.4121 -7.2882 39 1 -0.9326 -1.9128 -7.3743 40 1 4.0261 0.6603 -8.3679 41 1 3.8254 -0.3311 -9.8126 42 1 5.5123 -1.1325 -7.9966 43 1 4.3850 -2.3381 -8.6687 44 1 4.6614 -2.1775 -6.0416 45 1 3.0293 -2.3448 -6.7248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150211361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:51 Heat of formation + Delta-G solvation = -232.681757 kcal Electronic energy + Delta-G solvation = -30880.204982 eV Core-core repulsion = 26096.774529 eV Total energy + Delta-G solvation = -4783.430453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.10835 -48.59504 -48.56453 -41.13974 -40.32447 -36.82472 -36.39266 -35.63274 -33.85204 -32.97535 -30.53013 -29.20441 -27.35413 -27.05713 -26.63716 -24.27602 -22.59658 -22.36499 -21.33187 -21.13527 -19.60770 -19.34587 -18.92537 -18.58794 -17.72310 -17.52344 -16.96617 -16.75365 -16.50573 -16.14343 -15.77272 -15.56540 -15.53409 -15.40909 -15.01248 -14.95260 -14.77765 -14.72920 -14.67282 -14.41653 -14.19621 -14.00981 -13.94075 -13.54359 -13.30116 -13.21645 -12.93017 -12.64325 -12.49345 -12.36665 -12.32524 -12.26231 -12.25287 -11.92186 -11.75720 -11.36721 -11.17402 -10.89671 -10.55842 -10.25704 -10.02350 -8.70981 -7.89440 -5.29601 1.46865 1.52412 1.59457 1.63341 1.68434 2.22556 2.52546 2.82746 3.02908 3.07303 3.13926 3.28243 3.52484 3.62132 3.85595 3.95011 4.17254 4.24916 4.30359 4.39042 4.43861 4.53865 4.55111 4.58540 4.75472 4.80114 4.81059 4.81415 4.93564 4.99413 5.09686 5.19430 5.20022 5.25846 5.35605 5.42298 5.47403 5.53920 5.69286 6.37064 6.53421 6.58444 7.11773 7.25216 7.83809 8.36460 9.16671 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.002662 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.505104 B =10517.495812 C =11364.106804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 H 0.121 0.879 4 C -0.137 4.137 5 C 0.515 3.485 6 O -0.576 6.576 7 N -0.707 5.707 8 C 0.134 3.866 9 C 0.079 3.921 10 H 0.085 0.915 11 C 0.144 3.856 12 N -0.602 5.602 13 C -0.262 4.262 14 H 0.062 0.938 15 C -0.035 4.035 16 N -0.916 5.916 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.293 1.293 21 C 0.153 3.847 22 C -0.165 4.165 23 C 0.068 3.932 24 O -0.366 6.366 25 C 0.460 3.540 26 F -0.185 7.185 27 F -0.186 7.186 28 F -0.183 7.183 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.411 0.589 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.024 0.976 39 H 0.251 0.749 40 H 0.035 0.965 41 H 0.029 0.971 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -0.684 15.693 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.133 4.133 3 H 0.139 0.861 4 C -0.176 4.176 5 C 0.303 3.697 6 O -0.457 6.457 7 N -0.358 5.358 8 C 0.009 3.991 9 C 0.020 3.980 10 H 0.103 0.897 11 C 0.019 3.981 12 N -0.324 5.324 13 C -0.392 4.392 14 H 0.080 0.920 15 C -0.232 4.232 16 N -0.562 5.562 17 Si 0.787 3.213 18 H -0.201 1.201 19 H -0.220 1.220 20 H -0.220 1.220 21 C 0.025 3.975 22 C -0.206 4.206 23 C -0.010 4.010 24 O -0.285 6.285 25 C 0.406 3.594 26 F -0.167 7.167 27 F -0.167 7.167 28 F -0.165 7.165 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.557 0.127 15.900 16.844 hybrid contribution -0.706 -0.903 -0.849 1.426 sum 4.851 -0.776 15.051 15.833 Atomic orbital electron populations 1.21959 0.91156 1.03738 1.04549 1.22110 1.00151 1.01650 0.89415 0.86088 1.21713 1.05323 1.00860 0.89754 1.20715 0.78668 0.85330 0.84991 1.90667 1.41720 1.26265 1.87044 1.45810 1.56874 1.27910 1.05199 1.21347 0.99039 0.95086 0.83622 1.21758 0.80815 1.02144 0.93313 0.89736 1.20677 0.99664 0.91914 0.85828 1.44241 1.01305 1.58662 1.28179 1.19417 0.98445 1.29734 0.91573 0.92047 1.25442 1.00966 0.99505 0.97254 1.69986 1.22840 1.49915 1.13443 0.85371 0.79739 0.76769 0.79426 1.20134 1.22041 1.21959 1.20500 0.83771 0.96122 0.97079 1.23496 0.99812 1.00285 0.97023 1.22398 0.99030 0.86151 0.93377 1.87509 1.22347 1.41355 1.77272 1.20564 0.75223 0.77564 0.86066 1.93182 1.30242 1.96427 1.96801 1.93172 1.88519 1.80854 1.54187 1.93175 1.88443 1.38032 1.96817 0.90753 0.90311 0.91012 0.85750 0.85566 0.75306 0.91928 0.92328 0.90395 0.95818 0.93962 0.94679 0.95258 0.90371 0.92845 0.89441 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.69 71.98 0.63 -2.32 16 2 C -0.11 -2.01 2.01 -10.79 -0.02 -2.03 16 3 H 0.12 2.21 7.95 -2.39 -0.02 2.20 16 4 C -0.14 -2.36 4.93 29.84 0.15 -2.21 16 5 C 0.52 13.38 7.55 87.65 0.66 14.04 16 6 O -0.58 -18.86 13.96 -3.04 -0.04 -18.91 16 7 N -0.71 -19.47 5.41 -463.06 -2.51 -21.98 16 8 C 0.13 4.61 5.25 86.38 0.45 5.06 16 9 C 0.08 3.03 1.98 28.71 0.06 3.08 16 10 H 0.08 3.72 5.24 -2.39 -0.01 3.70 16 11 C 0.14 6.37 4.71 83.79 0.39 6.77 16 12 N -0.60 -28.26 2.61 -706.04 -1.84 -30.11 16 13 C -0.26 -13.46 9.62 84.03 0.81 -12.66 16 14 H 0.06 3.19 7.87 -2.91 -0.02 3.17 16 15 C -0.04 -1.80 4.93 84.86 0.42 -1.38 16 16 N -0.92 -47.15 9.56 21.65 0.21 -46.94 16 17 Si 0.96 42.42 29.59 68.60 2.03 44.45 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 21 C 0.15 6.18 5.33 87.75 0.47 6.65 16 22 C -0.17 -5.63 6.75 32.15 0.22 -5.41 16 23 C 0.07 2.29 6.38 72.73 0.46 2.75 16 24 O -0.37 -13.00 9.44 -137.15 -1.29 -14.30 16 25 C 0.46 8.03 2.69 71.98 0.19 8.23 16 26 F -0.19 -3.34 16.71 44.97 0.75 -2.59 16 27 F -0.19 -3.53 16.80 44.97 0.76 -2.78 16 28 F -0.18 -3.31 16.37 44.97 0.74 -2.57 16 29 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 30 H 0.08 1.88 5.95 -2.39 -0.01 1.87 16 31 H 0.07 1.21 7.80 -2.39 -0.02 1.20 16 32 H 0.12 1.75 7.94 -2.39 -0.02 1.73 16 33 H 0.13 1.69 7.66 -2.38 -0.02 1.68 16 34 H 0.41 9.78 8.26 -92.71 -0.77 9.01 16 35 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 3.86 6.03 -2.39 -0.01 3.85 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.25 12.73 8.31 -92.71 -0.77 11.96 16 40 H 0.03 1.37 7.98 -2.39 -0.02 1.35 16 41 H 0.03 1.18 7.95 -2.39 -0.02 1.16 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.04 1.45 6.66 -2.38 -0.02 1.44 16 Total: -1.00 -57.84 364.86 3.93 -53.91 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.26 Total: 21.24 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 4.89 Total: 20.57 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -4.14 Total: -99.02 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -1.34 Total: -33.20 kcal Atomic # 9 Polarization: -10.18 SS G_CDS: 2.24 Total: -7.94 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -57.84 3.93 -53.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150211361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.776 kcal (2) G-P(sol) polarization free energy of solvation -57.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds