Wall clock time and date at job start Tue Mar 31 2020 20:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46592 * 2 1 4 4 C 1.52995 * 109.47107 * 120.00009 * 2 1 3 5 5 C 1.50696 * 109.47357 * 295.00167 * 4 2 1 6 6 O 1.21281 * 120.00051 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00023 * 180.02562 * 5 4 2 8 8 C 1.46508 * 119.99754 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46878 * 180.02562 * 8 7 5 10 10 H 1.09000 * 108.57443 * 57.93836 * 9 8 7 11 11 C 1.47479 * 108.44073 * 175.91682 * 9 8 7 12 12 N 1.50120 * 106.48920 * 177.92732 * 11 9 8 13 13 C 1.36940 * 120.63606 * 111.37035 * 12 11 9 14 14 H 1.07996 * 119.99829 * 155.83039 * 13 12 11 15 15 C 1.38808 * 119.99859 * 335.83018 * 13 12 11 16 16 N 1.31619 * 120.00289 * 340.44450 * 15 13 12 17 17 Si 1.86794 * 120.00071 * 160.44531 * 15 13 12 18 18 H 1.48502 * 109.47454 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47297 * 299.99942 * 17 15 13 20 20 H 1.48504 * 109.47204 * 59.99808 * 17 15 13 21 21 C 1.43420 * 118.72677 * 291.10186 * 12 11 9 22 22 C 1.55324 * 116.24469 * 89.62528 * 21 12 11 23 23 C 1.55187 * 108.87168 * 319.46354 * 22 21 12 24 24 O 1.39646 * 110.56791 * 322.13814 * 23 22 21 25 25 C 1.52999 * 109.47469 * 240.00289 * 2 1 3 26 26 F 1.39894 * 109.46837 * 300.00137 * 25 2 1 27 27 F 1.39907 * 109.46925 * 59.99479 * 25 2 1 28 28 F 1.39892 * 109.47220 * 179.97438 * 25 2 1 29 29 H 1.09001 * 109.46592 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47399 * 299.99492 * 1 2 3 31 31 H 1.08995 * 109.47265 * 59.99957 * 1 2 3 32 32 H 1.09004 * 109.47059 * 175.00093 * 4 2 1 33 33 H 1.09002 * 109.47150 * 55.00729 * 4 2 1 34 34 H 0.96991 * 119.99992 * 359.97438 * 7 5 4 35 35 H 1.08997 * 109.47097 * 59.99732 * 8 7 5 36 36 H 1.09000 * 109.46898 * 299.99708 * 8 7 5 37 37 H 1.09001 * 110.11276 * 58.71790 * 11 9 8 38 38 H 1.09004 * 110.15187 * 297.16028 * 11 9 8 39 39 H 0.96992 * 120.00348 * 180.02562 * 16 15 13 40 40 H 1.09010 * 108.12835 * 211.38518 * 21 12 11 41 41 H 1.08997 * 108.12953 * 328.07519 * 21 12 11 42 42 H 1.08999 * 109.57226 * 79.27564 * 22 21 12 43 43 H 1.09002 * 109.57784 * 199.64258 * 22 21 12 44 44 H 1.09000 * 109.26051 * 82.42606 * 23 22 21 45 45 H 1.09001 * 109.25552 * 201.86337 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0109 1.0869 2.3633 7 7 1.9854 -0.3915 3.7001 8 6 1.5973 0.3648 4.8933 9 6 2.1085 -0.3557 6.1424 10 1 3.1911 -0.4572 6.0661 11 6 1.7925 0.4726 7.3210 12 7 2.2648 -0.2959 8.5209 13 6 3.3304 0.1472 9.2583 14 1 3.4315 -0.1479 10.2922 15 6 4.2803 0.9755 8.6767 16 7 4.3914 1.0311 7.3664 17 14 5.4012 2.0114 9.7537 18 1 6.3200 2.8019 8.8957 19 1 4.5805 2.9321 10.5808 20 1 6.1945 1.1232 10.6409 21 6 1.5751 -1.4998 8.8837 22 6 2.0994 -2.8124 8.2397 23 6 2.4551 -2.5357 6.7547 24 8 1.5318 -1.6568 6.1846 25 6 2.0401 -0.7212 -1.2492 26 9 1.5738 -2.0401 -1.2493 27 9 1.5737 -0.0616 -2.3915 28 9 3.4391 -0.7206 -1.2495 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.1264 -0.7994 1.2055 33 1 1.6055 -1.7198 1.2950 34 1 2.4892 -1.2153 3.7907 35 1 0.5109 0.4422 4.9370 36 1 2.0312 1.3637 4.8474 37 1 0.7172 0.6390 7.3847 38 1 2.3154 1.4271 7.2603 39 1 5.0554 1.6096 6.9600 40 1 1.6292 -1.6084 9.9671 41 1 0.5265 -1.3860 8.6088 42 1 2.9890 -3.1500 8.7714 43 1 1.3268 -3.5795 8.2933 44 1 3.4512 -2.0965 6.6994 45 1 2.4459 -3.4751 6.2019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150211364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:56 Heat of formation + Delta-G solvation = -217.303994 kcal Electronic energy + Delta-G solvation = -30872.219026 eV Core-core repulsion = 26089.455403 eV Total energy + Delta-G solvation = -4782.763623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.31916 -47.79636 -47.78167 -39.89188 -38.88262 -35.47648 -35.01748 -34.44194 -32.25221 -31.25406 -29.12904 -28.00434 -26.50555 -25.41146 -25.14021 -22.71701 -21.63176 -20.88596 -20.07603 -19.63739 -18.77715 -18.53632 -17.74644 -17.16650 -16.44744 -16.11181 -15.89590 -15.40590 -14.94689 -14.83526 -14.69529 -14.47400 -14.22592 -14.18818 -13.99504 -13.94478 -13.90906 -13.69935 -13.44294 -13.23400 -12.99034 -12.67536 -12.46872 -12.23729 -11.99041 -11.60359 -11.54520 -11.48457 -11.42251 -11.23906 -10.88187 -10.78732 -10.53582 -10.21725 -10.01226 -9.79096 -9.69644 -9.55912 -8.85955 -8.76683 -8.54467 -6.86940 -5.96793 -3.34846 2.49881 2.71902 3.24781 3.31130 3.37907 3.39987 3.64163 3.85274 3.88168 4.40029 4.44990 4.62549 4.63890 4.86226 5.07180 5.19061 5.24089 5.28069 5.29579 5.56808 5.66576 5.69861 5.77243 5.86970 5.93906 6.06091 6.09140 6.27429 6.35138 6.41614 6.49095 6.62201 6.65141 6.76750 6.85052 6.90931 7.05772 7.27026 7.67536 7.68970 8.07234 8.27565 8.34543 9.02672 9.70904 10.24883 11.12497 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.002645 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.604547 B =10584.405708 C =11294.203215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 H 0.123 0.877 4 C -0.145 4.145 5 C 0.516 3.484 6 O -0.545 6.545 7 N -0.710 5.710 8 C 0.121 3.879 9 C 0.060 3.940 10 H 0.107 0.893 11 C 0.143 3.857 12 N -0.588 5.588 13 C -0.250 4.250 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.908 5.908 17 Si 0.904 3.096 18 H -0.290 1.290 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.161 3.839 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.370 6.370 25 C 0.453 3.547 26 F -0.183 7.183 27 F -0.183 7.183 28 F -0.184 7.184 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.402 0.598 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.020 0.980 38 H 0.104 0.896 39 H 0.256 0.744 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -5.444 -14.046 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.141 0.859 4 C -0.186 4.186 5 C 0.301 3.699 6 O -0.424 6.424 7 N -0.360 5.360 8 C -0.003 4.003 9 C 0.002 3.998 10 H 0.125 0.875 11 C 0.019 3.981 12 N -0.308 5.308 13 C -0.379 4.379 14 H 0.087 0.913 15 C -0.195 4.195 16 N -0.553 5.553 17 Si 0.734 3.266 18 H -0.216 1.216 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.032 3.968 22 C -0.213 4.213 23 C -0.011 4.011 24 O -0.288 6.288 25 C 0.399 3.601 26 F -0.164 7.164 27 F -0.164 7.164 28 F -0.166 7.166 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.236 0.764 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.066 -4.642 -14.258 15.827 hybrid contribution 1.396 -0.136 0.412 1.462 sum -3.670 -4.778 -13.846 15.100 Atomic orbital electron populations 1.22008 0.90931 1.03374 1.05251 1.22157 1.00345 1.01704 0.89406 0.85912 1.21713 1.03959 1.00816 0.92067 1.20108 0.79713 0.85595 0.84456 1.90669 1.40502 1.24629 1.86613 1.45926 1.56671 1.27678 1.05718 1.21741 0.99989 0.95545 0.83066 1.22321 1.00154 0.83681 0.93671 0.87542 1.20867 0.95192 0.97099 0.84982 1.44097 1.34577 1.20668 1.31498 1.19226 0.99662 1.26244 0.92778 0.91328 1.24881 0.97193 1.01877 0.95552 1.69853 1.36468 1.40633 1.08386 0.86332 0.80025 0.80505 0.79699 1.21622 1.21071 1.21029 1.20368 0.94457 0.85590 0.96414 1.23580 1.00429 1.00244 0.97073 1.22346 0.93201 0.92513 0.93011 1.87514 1.41546 1.18869 1.80907 1.20689 0.75395 0.77712 0.86348 1.93166 1.88440 1.38011 1.96832 1.93175 1.88481 1.80762 1.54013 1.93183 1.30139 1.96421 1.96810 0.91836 0.88164 0.91529 0.87680 0.87623 0.76439 0.91878 0.90263 0.96229 0.87796 0.93411 0.94878 0.95018 0.92491 0.93166 0.91901 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.69 37.16 0.32 -1.22 16 2 C -0.12 -1.14 2.01 -90.62 -0.18 -1.32 16 3 H 0.12 1.23 7.96 -51.93 -0.41 0.82 16 4 C -0.15 -1.43 4.93 -27.89 -0.14 -1.56 16 5 C 0.52 7.01 7.55 -10.99 -0.08 6.92 16 6 O -0.55 -9.00 13.96 5.56 0.08 -8.93 16 7 N -0.71 -10.15 5.43 -60.29 -0.33 -10.48 16 8 C 0.12 2.07 5.23 -4.04 -0.02 2.04 16 9 C 0.06 1.16 1.96 -29.40 -0.06 1.11 16 10 H 0.11 2.32 5.27 -51.93 -0.27 2.04 16 11 C 0.14 3.13 4.74 -4.68 -0.02 3.11 16 12 N -0.59 -13.71 2.60 -174.21 -0.45 -14.17 16 13 C -0.25 -6.36 9.62 -15.06 -0.14 -6.51 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 15 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 16 N -0.91 -23.06 9.59 55.49 0.53 -22.53 16 17 Si 0.90 20.50 29.60 -169.99 -5.03 15.47 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.16 3.30 5.33 -4.44 -0.02 3.27 16 22 C -0.17 -3.10 6.75 -24.34 -0.16 -3.26 16 23 C 0.07 1.20 6.38 38.32 0.24 1.44 16 24 O -0.37 -6.85 9.53 -31.95 -0.30 -7.16 16 25 C 0.45 4.46 2.69 37.16 0.10 4.56 16 26 F -0.18 -1.85 16.37 2.25 0.04 -1.81 16 27 F -0.18 -1.91 16.80 2.25 0.04 -1.87 16 28 F -0.18 -1.92 16.71 2.25 0.04 -1.89 16 29 H 0.06 0.56 7.80 -51.93 -0.41 0.16 16 30 H 0.10 1.18 5.95 -51.93 -0.31 0.87 16 31 H 0.07 0.59 7.80 -51.93 -0.41 0.18 16 32 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 33 H 0.11 0.88 7.94 -51.93 -0.41 0.47 16 34 H 0.40 5.13 8.32 -40.82 -0.34 4.79 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 2.50 6.02 -51.93 -0.31 2.19 16 39 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 40 H 0.03 0.67 7.96 -51.92 -0.41 0.26 16 41 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.26 6.66 -51.93 -0.35 0.92 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -27.12 365.07 -6.68 -33.79 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.53 Total: 5.50 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -0.25 Total: 8.56 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.25 Total: -47.18 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.23 Total: -16.08 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.11 Total: -5.56 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.12 -6.68 -33.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150211364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.513 kcal (2) G-P(sol) polarization free energy of solvation -27.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds