Wall clock time and date at job start Tue Mar 31 2020 20:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46592 * 2 1 4 4 C 1.52995 * 109.47107 * 120.00009 * 2 1 3 5 5 C 1.50696 * 109.47357 * 295.00167 * 4 2 1 6 6 O 1.21281 * 120.00051 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00023 * 180.02562 * 5 4 2 8 8 C 1.46508 * 119.99754 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46878 * 180.02562 * 8 7 5 10 10 H 1.09000 * 108.57443 * 57.93836 * 9 8 7 11 11 C 1.47479 * 108.44073 * 175.91682 * 9 8 7 12 12 N 1.50120 * 106.48920 * 177.92732 * 11 9 8 13 13 C 1.36940 * 120.63606 * 111.37035 * 12 11 9 14 14 H 1.07996 * 119.99829 * 155.83039 * 13 12 11 15 15 C 1.38808 * 119.99859 * 335.83018 * 13 12 11 16 16 N 1.31619 * 120.00289 * 340.44450 * 15 13 12 17 17 Si 1.86794 * 120.00071 * 160.44531 * 15 13 12 18 18 H 1.48502 * 109.47454 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47297 * 299.99942 * 17 15 13 20 20 H 1.48504 * 109.47204 * 59.99808 * 17 15 13 21 21 C 1.43420 * 118.72677 * 291.10186 * 12 11 9 22 22 C 1.55324 * 116.24469 * 89.62528 * 21 12 11 23 23 C 1.55187 * 108.87168 * 319.46354 * 22 21 12 24 24 O 1.39646 * 110.56791 * 322.13814 * 23 22 21 25 25 C 1.52999 * 109.47469 * 240.00289 * 2 1 3 26 26 F 1.39894 * 109.46837 * 300.00137 * 25 2 1 27 27 F 1.39907 * 109.46925 * 59.99479 * 25 2 1 28 28 F 1.39892 * 109.47220 * 179.97438 * 25 2 1 29 29 H 1.09001 * 109.46592 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47399 * 299.99492 * 1 2 3 31 31 H 1.08995 * 109.47265 * 59.99957 * 1 2 3 32 32 H 1.09004 * 109.47059 * 175.00093 * 4 2 1 33 33 H 1.09002 * 109.47150 * 55.00729 * 4 2 1 34 34 H 0.96991 * 119.99992 * 359.97438 * 7 5 4 35 35 H 1.08997 * 109.47097 * 59.99732 * 8 7 5 36 36 H 1.09000 * 109.46898 * 299.99708 * 8 7 5 37 37 H 1.09001 * 110.11276 * 58.71790 * 11 9 8 38 38 H 1.09004 * 110.15187 * 297.16028 * 11 9 8 39 39 H 0.96992 * 120.00348 * 180.02562 * 16 15 13 40 40 H 1.09010 * 108.12835 * 211.38518 * 21 12 11 41 41 H 1.08997 * 108.12953 * 328.07519 * 21 12 11 42 42 H 1.08999 * 109.57226 * 79.27564 * 22 21 12 43 43 H 1.09002 * 109.57784 * 199.64258 * 22 21 12 44 44 H 1.09000 * 109.26051 * 82.42606 * 23 22 21 45 45 H 1.09001 * 109.25552 * 201.86337 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0109 1.0869 2.3633 7 7 1.9854 -0.3915 3.7001 8 6 1.5973 0.3648 4.8933 9 6 2.1085 -0.3557 6.1424 10 1 3.1911 -0.4572 6.0661 11 6 1.7925 0.4726 7.3210 12 7 2.2648 -0.2959 8.5209 13 6 3.3304 0.1472 9.2583 14 1 3.4315 -0.1479 10.2922 15 6 4.2803 0.9755 8.6767 16 7 4.3914 1.0311 7.3664 17 14 5.4012 2.0114 9.7537 18 1 6.3200 2.8019 8.8957 19 1 4.5805 2.9321 10.5808 20 1 6.1945 1.1232 10.6409 21 6 1.5751 -1.4998 8.8837 22 6 2.0994 -2.8124 8.2397 23 6 2.4551 -2.5357 6.7547 24 8 1.5318 -1.6568 6.1846 25 6 2.0401 -0.7212 -1.2492 26 9 1.5738 -2.0401 -1.2493 27 9 1.5737 -0.0616 -2.3915 28 9 3.4391 -0.7206 -1.2495 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.1264 -0.7994 1.2055 33 1 1.6055 -1.7198 1.2950 34 1 2.4892 -1.2153 3.7907 35 1 0.5109 0.4422 4.9370 36 1 2.0312 1.3637 4.8474 37 1 0.7172 0.6390 7.3847 38 1 2.3154 1.4271 7.2603 39 1 5.0554 1.6096 6.9600 40 1 1.6292 -1.6084 9.9671 41 1 0.5265 -1.3860 8.6088 42 1 2.9890 -3.1500 8.7714 43 1 1.3268 -3.5795 8.2933 44 1 3.4512 -2.0965 6.6994 45 1 2.4459 -3.4751 6.2019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150211364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:55 Heat of formation + Delta-G solvation = -232.859686 kcal Electronic energy + Delta-G solvation = -30872.893571 eV Core-core repulsion = 26089.455403 eV Total energy + Delta-G solvation = -4783.438169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.11114 -48.59744 -48.56728 -41.12883 -40.31235 -36.81964 -36.39336 -35.63236 -33.84908 -32.95618 -30.52438 -29.19031 -27.34866 -27.05512 -26.63477 -24.26638 -22.59418 -22.37774 -21.32784 -21.13660 -19.61012 -19.34710 -18.91684 -18.58992 -17.69380 -17.52133 -17.03646 -16.60351 -16.57882 -16.18805 -15.78322 -15.55619 -15.52364 -15.39519 -15.01556 -14.86445 -14.80860 -14.73151 -14.67187 -14.51909 -14.16440 -14.05606 -13.83482 -13.55614 -13.30092 -13.21797 -12.91780 -12.60459 -12.51304 -12.36663 -12.32262 -12.29782 -12.25385 -11.91986 -11.75971 -11.36973 -11.18030 -10.89650 -10.54703 -10.25209 -10.02268 -8.70815 -7.89183 -5.28937 1.48660 1.52651 1.57292 1.63460 1.68287 2.22613 2.52925 2.82707 3.02885 3.07407 3.14043 3.28225 3.52808 3.62078 3.85806 3.94888 4.17511 4.25240 4.30325 4.39016 4.44447 4.53928 4.55539 4.58593 4.75264 4.80303 4.80897 4.81554 4.94252 4.98901 5.09662 5.19660 5.19994 5.26398 5.35601 5.41980 5.47437 5.53619 5.69010 6.36967 6.53490 6.58227 7.11866 7.25100 7.84224 8.36696 9.16682 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017136 B = 0.002645 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.604547 B =10584.405708 C =11294.203215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 H 0.118 0.882 4 C -0.137 4.137 5 C 0.516 3.484 6 O -0.576 6.576 7 N -0.708 5.708 8 C 0.134 3.866 9 C 0.079 3.921 10 H 0.085 0.915 11 C 0.144 3.856 12 N -0.603 5.603 13 C -0.265 4.265 14 H 0.062 0.938 15 C -0.034 4.034 16 N -0.915 5.915 17 Si 0.957 3.043 18 H -0.294 1.294 19 H -0.286 1.286 20 H -0.282 1.282 21 C 0.154 3.846 22 C -0.165 4.165 23 C 0.068 3.932 24 O -0.366 6.366 25 C 0.460 3.540 26 F -0.182 7.182 27 F -0.186 7.186 28 F -0.186 7.186 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.411 0.589 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.029 0.971 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -6.961 -14.985 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 H 0.136 0.864 4 C -0.176 4.176 5 C 0.303 3.697 6 O -0.457 6.457 7 N -0.358 5.358 8 C 0.009 3.991 9 C 0.020 3.980 10 H 0.102 0.898 11 C 0.020 3.980 12 N -0.324 5.324 13 C -0.395 4.395 14 H 0.079 0.921 15 C -0.231 4.231 16 N -0.561 5.561 17 Si 0.787 3.213 18 H -0.220 1.220 19 H -0.213 1.213 20 H -0.208 1.208 21 C 0.026 3.974 22 C -0.206 4.206 23 C -0.009 4.009 24 O -0.284 6.284 25 C 0.406 3.594 26 F -0.163 7.163 27 F -0.167 7.167 28 F -0.168 7.168 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.247 0.753 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.179 -6.195 -15.202 17.214 hybrid contribution 1.379 0.326 0.733 1.595 sum -3.800 -5.869 -14.469 16.070 Atomic orbital electron populations 1.21953 0.90883 1.03856 1.04560 1.22116 1.00374 1.01533 0.89410 0.86378 1.21713 1.05169 1.01008 0.89759 1.20714 0.78697 0.85297 0.84987 1.90666 1.41807 1.26168 1.87044 1.45823 1.56953 1.27844 1.05208 1.21352 0.99410 0.94783 0.83573 1.21860 0.98739 0.83910 0.93475 0.89777 1.20803 0.94861 0.96511 0.85860 1.44222 1.34331 1.21962 1.31890 1.19356 1.00374 1.26898 0.92849 0.92059 1.25428 0.98416 1.02679 0.96558 1.69977 1.36557 1.40549 1.09014 0.85510 0.78478 0.79061 0.78290 1.21972 1.21313 1.20773 1.20485 0.94441 0.85967 0.96528 1.23498 1.01029 0.99247 0.96853 1.22395 0.91623 0.93494 0.93433 1.87513 1.41656 1.18396 1.80881 1.20566 0.75179 0.77605 0.86079 1.93171 1.88411 1.37936 1.96815 1.93171 1.88513 1.80862 1.54196 1.93182 1.30377 1.96429 1.96806 0.90764 0.90219 0.90820 0.85931 0.85396 0.75331 0.92214 0.91998 0.95790 0.90385 0.93947 0.95246 0.94683 0.92875 0.90358 0.94495 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.69 71.98 0.63 -2.17 16 2 C -0.11 -2.04 2.01 -10.79 -0.02 -2.06 16 3 H 0.12 2.24 7.96 -2.39 -0.02 2.23 16 4 C -0.14 -2.37 4.93 29.85 0.15 -2.22 16 5 C 0.52 13.40 7.55 87.65 0.66 14.06 16 6 O -0.58 -18.87 13.96 -3.03 -0.04 -18.91 16 7 N -0.71 -19.50 5.43 -463.05 -2.52 -22.01 16 8 C 0.13 4.60 5.23 86.38 0.45 5.05 16 9 C 0.08 3.04 1.96 28.87 0.06 3.10 16 10 H 0.08 3.70 5.27 -2.39 -0.01 3.68 16 11 C 0.14 6.40 4.74 83.95 0.40 6.79 16 12 N -0.60 -28.29 2.60 -705.07 -1.84 -30.13 16 13 C -0.26 -13.64 9.62 84.03 0.81 -12.83 16 14 H 0.06 3.17 7.88 -2.91 -0.02 3.15 16 15 C -0.03 -1.75 4.91 84.86 0.42 -1.34 16 16 N -0.92 -47.20 9.59 21.65 0.21 -47.00 16 17 Si 0.96 42.47 29.60 68.60 2.03 44.50 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 C 0.15 6.20 5.33 87.75 0.47 6.66 16 22 C -0.17 -5.63 6.75 32.14 0.22 -5.41 16 23 C 0.07 2.29 6.38 72.73 0.46 2.76 16 24 O -0.37 -12.98 9.53 -137.25 -1.31 -14.29 16 25 C 0.46 8.09 2.69 71.98 0.19 8.28 16 26 F -0.18 -3.20 16.37 44.97 0.74 -2.47 16 27 F -0.19 -3.55 16.80 44.97 0.76 -2.80 16 28 F -0.19 -3.51 16.71 44.97 0.75 -2.75 16 29 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 30 H 0.08 1.82 5.95 -2.39 -0.01 1.80 16 31 H 0.07 1.20 7.80 -2.39 -0.02 1.18 16 32 H 0.12 1.76 7.66 -2.38 -0.02 1.74 16 33 H 0.13 1.70 7.94 -2.39 -0.02 1.68 16 34 H 0.41 9.78 8.32 -92.72 -0.77 9.01 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 3.87 6.02 -2.39 -0.01 3.85 16 39 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 40 H 0.03 1.18 7.96 -2.38 -0.02 1.16 16 41 H 0.03 1.37 7.97 -2.39 -0.02 1.35 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.04 1.45 6.66 -2.39 -0.02 1.44 16 45 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -57.87 365.07 3.91 -53.96 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.25 Total: 21.22 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 4.89 Total: 20.68 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -4.14 Total: -99.13 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.35 Total: -33.20 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 2.24 Total: -8.02 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -57.87 3.91 -53.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150211364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.899 kcal (2) G-P(sol) polarization free energy of solvation -57.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds