Wall clock time and date at job start Tue Mar 31 2020 20:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36023 * 116.99857 * 2 1 4 4 C 1.35504 * 120.48301 * 359.97438 * 3 2 1 5 5 O 1.33822 * 121.01560 * 180.02562 * 4 3 2 6 6 C 1.34294 * 122.04347 * 0.02562 * 5 4 3 7 7 C 1.48049 * 119.57260 * 179.72092 * 6 5 4 8 8 O 1.21519 * 119.99849 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99985 * 0.02562 * 7 6 5 10 10 C 1.46501 * 119.99729 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47646 * 34.99178 * 10 9 7 12 12 C 1.53007 * 109.46706 * 274.99322 * 10 9 7 13 13 C 1.52995 * 109.47005 * 154.99692 * 10 9 7 14 14 C 1.52997 * 109.47202 * 294.99225 * 13 10 9 15 15 C 1.52995 * 109.47202 * 179.97438 * 14 13 10 16 16 C 1.52998 * 109.47414 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47267 * 180.02562 * 16 15 14 18 18 C 1.36943 * 119.99825 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99871 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00031 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99860 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47346 * 89.99517 * 22 20 18 24 24 H 1.48499 * 109.46752 * 209.99786 * 22 20 18 25 25 H 1.48501 * 109.47067 * 329.99377 * 22 20 18 26 26 C 1.35797 * 120.85290 * 359.97438 * 6 5 4 27 27 C 1.42009 * 120.48806 * 180.02562 * 3 2 1 28 28 O 1.22124 * 120.91326 * 359.95246 * 27 3 2 29 29 H 1.08999 * 109.46898 * 60.00899 * 1 2 3 30 30 H 1.09005 * 109.46383 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47557 * 300.00138 * 1 2 3 32 32 H 1.08003 * 119.48991 * 0.04659 * 4 3 2 33 33 H 0.96993 * 119.99889 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.46747 * 60.00270 * 12 10 9 35 35 H 1.08995 * 109.46786 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47376 * 300.00416 * 12 10 9 37 37 H 1.08997 * 109.47076 * 54.99710 * 13 10 9 38 38 H 1.09001 * 109.46984 * 174.99350 * 13 10 9 39 39 H 1.08997 * 109.47500 * 300.00225 * 14 13 10 40 40 H 1.09005 * 109.46532 * 60.00693 * 14 13 10 41 41 H 1.09006 * 109.47241 * 300.00276 * 15 14 13 42 42 H 1.09001 * 109.46984 * 60.00125 * 15 14 13 43 43 H 1.08997 * 109.47132 * 300.00129 * 16 15 14 44 44 H 1.09001 * 109.47206 * 59.99939 * 16 15 14 45 45 H 0.96992 * 120.00125 * 359.97438 * 17 16 15 46 46 H 0.96996 * 119.99706 * 180.02562 * 21 20 18 47 47 H 1.08001 * 120.55255 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3181 2.3546 -0.0005 5 8 1.9145 3.5526 -0.0010 6 6 3.2511 3.6831 -0.0016 7 6 3.8531 5.0356 -0.0084 8 8 5.0617 5.1627 -0.0094 9 7 3.0608 6.1259 -0.0135 10 6 3.6566 7.4643 -0.0208 11 1 4.5731 7.4509 -0.6107 12 6 3.9797 7.8865 1.4139 13 6 2.6693 8.4587 -0.6350 14 6 2.4423 8.1088 -2.1070 15 6 1.4545 9.1028 -2.7210 16 6 1.2270 8.7526 -4.1929 17 7 0.2816 9.7048 -4.7810 18 6 -0.0763 9.5896 -6.0978 19 1 0.3381 8.7966 -6.7026 20 6 -0.9725 10.4915 -6.6549 21 7 -1.3169 10.3805 -7.9204 22 14 -1.6897 11.8627 -5.6085 23 1 -0.8151 13.0598 -5.6939 24 1 -3.0471 12.2049 -6.1039 25 1 -1.7771 11.4133 -4.1958 26 6 4.0575 2.5905 -0.0011 27 6 3.4640 1.2984 -0.0005 28 8 4.1540 0.2908 -0.0002 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2396 2.2975 -0.0002 33 1 2.0962 6.0244 -0.0131 34 1 4.6831 7.1780 1.8514 35 1 4.4234 8.8820 1.4084 36 1 3.0632 7.8999 2.0038 37 1 1.7216 8.4077 -0.0990 38 1 3.0755 9.4674 -0.5598 39 1 3.3901 8.1597 -2.6430 40 1 2.0361 7.1001 -2.1822 41 1 0.5068 9.0514 -2.1850 42 1 1.8603 10.1117 -2.6458 43 1 2.1745 8.8037 -4.7292 44 1 0.8211 7.7437 -4.2678 45 1 -0.0908 10.4167 -4.2377 46 1 -1.9428 11.0109 -8.3097 47 1 5.1318 2.7011 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171803014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:33 Heat of formation + Delta-G solvation = -95.256866 kcal Electronic energy + Delta-G solvation = -28451.717643 eV Core-core repulsion = 24216.103121 eV Total energy + Delta-G solvation = -4235.614522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64243 -40.41887 -39.60305 -38.57484 -37.35734 -35.58956 -33.52525 -33.10905 -32.28755 -31.41317 -30.61150 -28.37852 -27.87279 -25.85616 -24.44494 -24.26832 -22.38446 -21.55334 -21.08130 -20.91429 -19.64148 -19.29118 -18.41505 -17.53035 -17.35790 -16.88268 -16.48422 -16.08047 -15.66197 -15.36092 -15.27491 -15.21651 -14.91652 -14.66219 -14.43689 -14.41200 -14.24036 -13.67937 -13.50462 -13.19677 -13.15500 -12.80083 -12.59656 -12.10883 -12.04868 -12.01733 -11.80441 -11.57978 -11.29576 -10.98180 -10.92585 -10.86791 -10.49416 -10.42640 -10.30761 -10.27191 -10.14654 -9.64075 -9.58793 -8.91585 -8.79721 -7.25105 -5.78870 -3.14428 -0.13032 0.43840 1.51887 2.19573 2.41804 2.52624 2.92844 3.34242 3.37012 3.42406 3.69675 3.85932 3.90472 4.32475 4.41433 4.55267 4.56683 4.61702 4.65244 4.74878 4.77333 4.90197 4.96764 5.06077 5.16893 5.21029 5.37630 5.42371 5.45152 5.49399 5.55705 5.64534 5.75739 5.88827 5.90342 6.00055 6.10623 6.12179 6.28172 6.30648 6.44241 6.72547 6.76300 6.87393 7.15507 7.44214 7.97965 8.40405 9.19716 9.92059 10.12085 11.39672 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.002174 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.198485 B =12877.098455 C =14632.519798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.282 6.282 3 C -0.049 4.049 4 C -0.004 4.004 5 O -0.195 6.195 6 C 0.089 3.911 7 C 0.578 3.422 8 O -0.500 6.500 9 N -0.701 5.701 10 C 0.138 3.862 11 H 0.096 0.904 12 C -0.165 4.165 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.129 4.129 16 C 0.156 3.844 17 N -0.758 5.758 18 C -0.245 4.245 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.224 4.224 27 C 0.407 3.593 28 O -0.454 6.454 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.410 0.590 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -14.302 24.553 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.195 6.195 3 C -0.097 4.097 4 C -0.070 4.070 5 O -0.098 6.098 6 C 0.037 3.963 7 C 0.361 3.639 8 O -0.375 6.375 9 N -0.352 5.352 10 C 0.034 3.966 11 H 0.114 0.886 12 C -0.223 4.223 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.167 4.167 16 C 0.029 3.971 17 N -0.404 5.404 18 C -0.375 4.375 19 H 0.107 0.893 20 C -0.194 4.194 21 N -0.583 5.583 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.246 4.246 27 C 0.293 3.707 28 O -0.337 6.337 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.222 0.778 33 H 0.246 0.754 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.533 -14.770 24.308 29.184 hybrid contribution -1.502 0.892 0.547 1.831 sum 5.030 -13.878 24.854 28.907 Atomic orbital electron populations 1.23273 0.78143 1.05306 1.01505 1.86301 1.21149 1.23533 1.88552 1.21032 0.95335 0.86152 1.07176 1.23943 0.98270 0.80927 1.03828 1.82892 1.19975 1.31053 1.75895 1.22425 0.80383 0.96143 0.97304 1.17346 0.86493 0.82077 0.77996 1.90902 1.12705 1.84694 1.49245 1.46082 1.10705 1.05704 1.72720 1.21242 0.97876 0.80067 0.97378 0.88617 1.22195 1.02097 1.02201 0.95821 1.21961 0.99064 0.98949 0.96591 1.21541 1.00153 0.99628 0.94156 1.21775 0.98776 0.99011 0.97177 1.20627 0.92977 0.93088 0.90414 1.42735 1.53228 1.34225 1.10188 1.19083 1.21092 1.12016 0.85275 0.89284 1.24699 0.99702 0.99077 0.95879 1.69707 1.37960 1.39043 1.11582 0.86512 0.78783 0.83094 0.79913 1.21060 1.21722 1.20383 1.23189 1.03757 0.90982 1.06680 1.17102 0.86316 0.89825 0.77450 1.90862 1.65094 1.37926 1.39821 0.92036 0.87257 0.92241 0.77843 0.75406 0.92032 0.91014 0.92203 0.91101 0.89769 0.91588 0.91935 0.92140 0.92009 0.95668 0.95827 0.80734 0.93054 0.80349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 101.05 0.99 1.04 16 2 O -0.28 -2.57 10.35 -35.05 -0.36 -2.93 16 3 C -0.05 -0.44 6.72 -39.11 -0.26 -0.70 16 4 C 0.00 -0.02 10.43 29.76 0.31 0.29 16 5 O -0.20 -1.26 9.06 7.01 0.06 -1.19 16 6 C 0.09 0.73 6.90 -36.43 -0.25 0.48 16 7 C 0.58 5.18 7.77 -12.23 -0.10 5.09 16 8 O -0.50 -5.94 15.92 5.35 0.09 -5.85 16 9 N -0.70 -4.90 4.53 -54.69 -0.25 -5.15 16 10 C 0.14 0.99 2.57 -67.93 -0.17 0.82 16 11 H 0.10 0.83 7.58 -51.93 -0.39 0.44 16 12 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 13 C -0.13 -0.92 4.75 -26.73 -0.13 -1.05 16 14 C -0.12 -1.17 5.10 -26.73 -0.14 -1.30 16 15 C -0.13 -1.74 5.33 -26.73 -0.14 -1.89 16 16 C 0.16 2.92 6.26 -4.04 -0.03 2.89 16 17 N -0.76 -17.99 5.41 -59.91 -0.32 -18.32 16 18 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 21 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 22 Si 0.89 21.91 27.74 -169.99 -4.71 17.20 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 26 C -0.22 -2.16 9.56 -38.94 -0.37 -2.54 16 27 C 0.41 4.65 6.82 -36.62 -0.25 4.40 16 28 O -0.45 -6.85 17.74 -10.44 -0.19 -7.04 16 29 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 30 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 32 H 0.21 0.41 6.22 -52.48 -0.33 0.08 16 33 H 0.41 2.15 8.00 -40.82 -0.33 1.82 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.61 7.75 -51.93 -0.40 0.21 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.36 8.25 5.53 -40.82 -0.23 8.02 16 46 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 47 H 0.18 1.71 7.56 -52.49 -0.40 1.32 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -37.07 396.83 -6.48 -43.55 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.11 Total: 2.75 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.44 Total: -0.34 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.20 Total: -52.12 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.40 Total: -17.01 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.07 -6.48 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171803014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.707 kcal (2) G-P(sol) polarization free energy of solvation -37.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds